Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001607

Physical Location & Seq

Genomic Coordinates Forward (+)

11696242 .. 11697576

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCCTTGAGAAACACCATAATGATTTTCTTGGTTGCAATGGCTTGTTTGGGCGTTTGTTCAGGTGCTTCTTCATCTGAAGCTGCTCACAGTGGAGTTGTTCATAAAGTGGGCGACTCAGTTGGGTGGAGCATTCTTGGTGATTACAAGAAGTGGGCTTCCACAAAAGAGTTTCACGTCGGAGATACTCTACTCTTCGCTTACAATAAGGAGTACCATAACTTGATGGAAGTGAATGGAGAAGATTACCAGCCTTGCAACGCAAAGTCTCCTCTAGCACTCTATGCTGCCGGACTTGATTCTATCCCTCTTGACAAACCTGGTGACTATTACTTCATCTGCGGTAGAAATTTCGAACCAGACTGGTATGCTATGACTCTCAAGGAACCAGGCCACTGCCAAGCAGGACAAAAGCTTCATGTCAAGGTCACTGAACCTATATCAGATCACAATTCCGTTGCAAGTCCAACCGCAGCACCAGCACCCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

164

Amino Acids

17.7

Weight (kDa)

5.85

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	43 - 116	7.8e-24	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06070 FvH4_5g19880 FvH4_6g29420
malus_domestica	MD14G1053600.v1.1 MD14G1053700.v1.1 MD14G1053900.v1.1
prunus_persica	Prupe.4G207100_v2.0.a1 Prupe.4G207200_v2.0.a1 Prupe.4G207300_v2.0.a1 Prupe.4G207400_v2.0.a1 Prupe.4G207500_v2.0.a1 Prupe.7G081300_v2.0.a1 Prupe.7G081800_v2.0.a1 Prupe.7G082100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349461 RchiOBHm_Chr1g0368361 RchiOBHm_Chr7g0204671
rosa_laevigata	RLG00000003394 RLG00000003439 RLG00000027216 RLG00000028547
rosa_multiflora	Rmu_sc0001072.1_g000006 Rmu_sc0002495.1_g000010 Rmu_sc0002709.1_g000045 Rmu_sc0007104.1_g000009 Rmu_sc0009349.1_g000011
rosa_roxburghii	Rroxscaffold_3G00252880 Rroxscaffold_4G00288610 Rroxscaffold_4G00305530
rosa_rugosa	Rorug01G0203900 Rorug01G0341600 Rorug07G0085500 Rorug07G0088600
rosa_samantha	Rh1AG221300 Rh1AG348100 Rh1AG348600 Rh1BG187400 Rh1BG311100 Rh1CG206200 Rh1DG216700 Rh1DG342900 Rh7AG215400 Rh7BG212600 Rh7CG228500 Rh7DG223100
rosa_wichuraiana	Rw0G002410 Rw1G018810 Rw1G030990 Rw1G031020 Rw7G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	342, 471
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	1 cut(s)	215
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	2 cut(s)	319, 388
AluBI	AGCT	2 cut(s)	83, 415
AluI	AGCT	2 cut(s)	83, 415
Alw26I	GTCTC	1 cut(s)	273
AoxI	GGCC	2 cut(s)	3, 391
ApeKI	GCWGC	3 cut(s)	83, 287, 473
ApoI	RAATTY	1 cut(s)	349
AsuHPI	GGTGA	2 cut(s)	152, 335
AsuII	TTCGAA	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	70, 274, 485
BccI	CCATC	1 cut(s)	220
BciT130I	CCWGG	2 cut(s)	321, 390
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	3 cut(s)	84, 288, 474
BlsI	GCNGC	3 cut(s)	85, 289, 475
Bme1390I	CCNGG	2 cut(s)	321, 390
BmgBI	CACGTC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	2 cut(s)	321, 390
Bpu14I	TTCGAA	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	28, 365
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	321, 390
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	70, 274, 485
BshFI	GGCC	2 cut(s)	5, 393
BsiSI	CCGG	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	5, 393
Bsp119I	TTCGAA	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	445
BspACI	CCGC	2 cut(s)	342, 471
BspANI	GGCC	2 cut(s)	5, 393
BspCNI	CTCAG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	387
BspT104I	TTCGAA	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	368
BssMI	GATC	1 cut(s)	445
Bst2UI	CCWGG	2 cut(s)	321, 390
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	448
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	445
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 479
BstNI	CCWGG	2 cut(s)	321, 390
BstSCI	CCNGG	2 cut(s)	319, 388
BstV1I	GCAGC	3 cut(s)	70, 274, 485
BsuRI	GGCC	2 cut(s)	5, 393
BtrI	CACGTC	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	4 cut(s)	97, 394, 429, 487
CsiI	ACCWGGT	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	419
CviJI	RGCY	7 cut(s)	5, 44, 83, 158, 253, 393, 415
CviKI_1	RGCY	7 cut(s)	5, 44, 83, 158, 253, 393, 415
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	319, 388
FaeI	CATG	1 cut(s)	422
FaiI	YATR	8 cut(s)	20, 105, 219, 285, 369, 374, 420, 440
FatI	CATG	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	84, 288, 474
Fsp4HI	GCNGC	3 cut(s)	84, 288, 474
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	3 cut(s)	84, 288, 474
HaeIII	GGCC	2 cut(s)	5, 393
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	1 cut(s)	422
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	3 cut(s)	116, 299, 376
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	152, 335
Hpy188I	TCNGA	3 cut(s)	79, 182, 445
Hpy188III	TCNNGA	1 cut(s)	311
Hpy99I	CGWCG	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	38, 258, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 479
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	422
Kzo9I	GATC	1 cut(s)	445
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	3 cut(s)	70, 274, 485
MabI	ACCWGGT	1 cut(s)	319
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	323, 427
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	3 cut(s)	63, 187, 254
MluCI	AATT	2 cut(s)	349, 451
MlyI	GAGTC	2 cut(s)	110, 370
MmeI	TCCRAC	2 cut(s)	160, 491
MnlI	CCTC	2 cut(s)	282, 318
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	2 cut(s)	321, 390
Mva1269I	GAATGC	1 cut(s)	132
MvaI	CCWGG	2 cut(s)	321, 390
MwoI	GCNNNNNNNGC	2 cut(s)	284, 479
NdeII	GATC	1 cut(s)	445
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	1 cut(s)	387
NmuCI	GTSAC	2 cut(s)	323, 427
NspV	TTCGAA	1 cut(s)	354
PctI	GAATGC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	3 cut(s)	85, 289, 475
PleI	GAGTC	2 cut(s)	110, 370
PpsI	GAGTC	2 cut(s)	110, 370
Psp6I	CCWGG	2 cut(s)	319, 388
PspGI	CCWGG	2 cut(s)	319, 388
PspN4I	GGNNCC	1 cut(s)	387
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	20
SatI	GCNGC	3 cut(s)	84, 288, 474
Sau3AI	GATC	1 cut(s)	445
SchI	GAGTC	2 cut(s)	110, 370
ScrFI	CCNGG	2 cut(s)	321, 390
SetI	ASST	7 cut(s)	67, 85, 180, 322, 417, 429, 439
SexAI	ACCWGGT	1 cut(s)	319
SfuI	TTCGAA	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	2 cut(s)	7, 380
SmoI	CTYRAG	2 cut(s)	7, 380
Sse9I	AATT	2 cut(s)	349, 451
SsiI	CCGC	2 cut(s)	342, 471
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	319, 388
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	354
TasI	AATT	2 cut(s)	349, 451
TfiI	GAWTC	1 cut(s)	299
TscAI	CASTG	3 cut(s)	97, 401, 436
TseFI	GTSAC	2 cut(s)	323, 427
TseI	GCWGC	3 cut(s)	83, 287, 473
Tsp45I	GTSAC	2 cut(s)	323, 427
TspDTI	ATGAA	4 cut(s)	63, 92, 325, 407
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	3 cut(s)	97, 401, 436
XapI	RAATTY	1 cut(s)	349
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.