MD14G1053700.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0001607
Physical Location & Seq
Forward (+)
5408423 .. 5408965
543 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1053700.v1.1.491

Sequence Viewer

Length: 543 bp
ATGTCTCTGCGAAACACTTCTACACTAATTTTCTTCGTGATGATGGTGCTTTCTGGTGTTTGTGTTGGTGATGTTTATAGAGTTGGCGATTCTGATGGGTGGACATCTCGAGGTCTCGTCAATTACAACAAGTGGGCTTCAACGAAAGAGTTTCATGTCGGCGATACTCTCATATTTGCTTACAATAGTCAGTTCCACAACTTGATGCAAGTTACCAAGCAAGATTTTGAATCTTGCAATACTACCGCTACGATTGCAGTTTATACCTCTGGTTCTGATACCATCACCCTTAAAAGGCCCGACCACTATTACTTCCTTTGTGGTGCTCCCGGCCATTGTCAAGCGGGACAAAAGATTGATGTCAAGGTTACCCTACCGATACCACAAAGTTCACTAGCAAGTCCAAAGCCGGCGCCTCATGGATCATTGTCCTCAGACTCTCATCCAAGCTCAACTCCAAGCAGTGCTCAGACAATTTATTTTTCGAAGCTTGGGTTGGCCGTTACCACTCTTGTGTTATGTCTTTTGAGTGTTGTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

181

Amino Acids

19.54

Weight (kDa)

7.67

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 117 6.3e-30 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 412
AciI CCGC 2 cut(s) 246, 344
AclWI GGATC 1 cut(s) 430
AcoI YGGCCR 2 cut(s) 331, 498
AcyI GRCGYC 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 294
AgsI TTSAA 2 cut(s) 141, 230
AjuI GAANNNNNNNTTGG 2 cut(s) 479, 511
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 2 cut(s) 450, 490
AluI AGCT 2 cut(s) 450, 490
Alw21I GWGCWC 2 cut(s) 328, 469
Alw26I GTCTC 2 cut(s) 9, 119
AlwI GGATC 1 cut(s) 430
Ama87I CYCGRG 1 cut(s) 108
AoxI GGCC 3 cut(s) 296, 331, 498
Asp700I GAANNNNTTC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 1 cut(s) 297
AsuC2I CCSGG 1 cut(s) 330
AsuHPI GGTGA 2 cut(s) 80, 277
AsuII TTCGAA 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 108
BanI GGYRCC 1 cut(s) 412
Bbv12I GWGCWC 2 cut(s) 328, 469
BccI CCATC 3 cut(s) 37, 89, 290
BceAI ACGGC 1 cut(s) 485
BcnI CCSGG 1 cut(s) 330
BcoDI GTCTC 2 cut(s) 9, 119
BfaI CTAG 1 cut(s) 395
BfoI RGCGCY 1 cut(s) 416
Bme1390I CCNGG 1 cut(s) 330
BmeT110I CYCGRG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 485
BpuMI CCSGG 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse118I RCCGGY 1 cut(s) 409
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMII CTCAG 2 cut(s) 447, 482
BshFI GGCC 3 cut(s) 298, 333, 500
BshNI GGYRCC 1 cut(s) 412
BsiHKAI GWGCWC 2 cut(s) 328, 469
BsiHKCI CYCGRG 1 cut(s) 108
BsiSI CCGG 2 cut(s) 330, 410
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 2 cut(s) 9, 119
BsmFI GGGAC 1 cut(s) 360
BsnI GGCC 3 cut(s) 298, 333, 500
Bso31I GGTCTC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 108
Bsp119I TTCGAA 1 cut(s) 485
Bsp1286I GDGCHC 2 cut(s) 328, 469
Bsp143I GATC 1 cut(s) 422
BspACI CCGC 2 cut(s) 246, 344
BspANI GGCC 3 cut(s) 298, 333, 500
BspCNI CTCAG 2 cut(s) 446, 481
BspLI GGNNCC 1 cut(s) 414
BspPI GGATC 1 cut(s) 430
BspT104I TTCGAA 1 cut(s) 485
BspT107I GGYRCC 1 cut(s) 412
BspTNI GGTCTC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 409
BssAI RCCGGY 1 cut(s) 409
BssMI GATC 1 cut(s) 422
BssNI GRCGYC 1 cut(s) 413
BstACI GRCGYC 1 cut(s) 413
BstBI TTCGAA 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 2 cut(s) 433, 468
BstEII GGTNACC 1 cut(s) 367
BstF5I GGATG 1 cut(s) 442
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 1 cut(s) 425
BstMAI GTCTC 2 cut(s) 9, 119
BstMBI GATC 1 cut(s) 422
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstPI GGTNACC 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 328
BsuRI GGCC 3 cut(s) 298, 333, 500
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 469
Cac8I GCNNGC 1 cut(s) 411
CfoI GCGC 1 cut(s) 415
Cfr10I RCCGGY 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 297
CviAII CATG 2 cut(s) 155, 419
CviJI RGCY 7 cut(s) 137, 298, 333, 409, 450, 490, 500
CviKI_1 RGCY 7 cut(s) 137, 298, 333, 409, 450, 490, 500
DdeI CTNAG 2 cut(s) 433, 468
DinI GGCGCC 1 cut(s) 414
DpnI GATC 1 cut(s) 424
DpnII GATC 1 cut(s) 422
EaeI YGGCCR 2 cut(s) 331, 498
Eco31I GGTCTC 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 108
Eco91I GGTNACC 1 cut(s) 367
EcoO65I GGTNACC 1 cut(s) 367
EgeI GGCGCC 1 cut(s) 414
EheI GGCGCC 1 cut(s) 414
FaeI CATG 2 cut(s) 158, 422
FaiI YATR 6 cut(s) 78, 156, 173, 264, 420, 520
FaqI GGGAC 1 cut(s) 360
FatI CATG 2 cut(s) 154, 418
FauI CCCGC 1 cut(s) 337
FokI GGATG 1 cut(s) 429
FspBI CTAG 1 cut(s) 395
GlaI GCGC 1 cut(s) 414
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 3 cut(s) 298, 333, 500
HapII CCGG 2 cut(s) 330, 410
HhaI GCGC 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 2 cut(s) 158, 422
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 3 cut(s) 89, 230, 437
HpaII CCGG 2 cut(s) 330, 410
HphI GGTGA 2 cut(s) 80, 277
Hpy166II GTNNAC 2 cut(s) 102, 392
Hpy188I TCNGA 4 cut(s) 94, 277, 436, 471
Hpy188III TCNNGA 2 cut(s) 37, 108
Hpy8I GTNNAC 2 cut(s) 102, 392
HpyCH4V TGCA 3 cut(s) 208, 237, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 2 cut(s) 433, 468
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 2 cut(s) 158, 422
HspAI GCGC 1 cut(s) 413
KasI GGCGCC 1 cut(s) 412
KroI GCCGGC 1 cut(s) 409
KroNI GCCGGC 1 cut(s) 411
Kzo9I GATC 1 cut(s) 422
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 4 cut(s) 39, 255, 343, 423
LweI GCATC 1 cut(s) 195
MaeI CTAG 1 cut(s) 395
MaeIII GTNAC 3 cut(s) 211, 367, 502
MalI GATC 1 cut(s) 424
MboI GATC 1 cut(s) 422
MboII GAAGA 1 cut(s) 25
MhlI GDGCHC 2 cut(s) 328, 469
MluCI AATT 3 cut(s) 27, 121, 474
Mly113I GGCGCC 1 cut(s) 413
MlyI GAGTC 1 cut(s) 431
MnlI CCTC 4 cut(s) 104, 277, 426, 442
MroNI GCCGGC 1 cut(s) 409
MroXI GAANNNNTTC 1 cut(s) 16
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 512
MspI CCGG 2 cut(s) 330, 410
MspR9I CCNGG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 254
NaeI GCCGGC 1 cut(s) 411
NarI GGCGCC 1 cut(s) 413
NciI CCSGG 1 cut(s) 330
NdeII GATC 1 cut(s) 422
NgoMIV GCCGGC 1 cut(s) 409
NlaIII CATG 2 cut(s) 158, 422
NlaIV GGNNCC 1 cut(s) 414
NspV TTCGAA 1 cut(s) 485
OliI CACNNNNGTG 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 108
PdiI GCCGGC 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 16
PfeI GAWTC 2 cut(s) 89, 230
PleI GAGTC 1 cut(s) 431
PluTI GGCGCC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 431
PspEI GGTNACC 1 cut(s) 367
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 1 cut(s) 297
RseI CAYNNNNRTG 1 cut(s) 512
SaqAI TTAA 1 cut(s) 291
Sau3AI GATC 1 cut(s) 422
Sau96I GGNCC 1 cut(s) 297
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 2 cut(s) 328, 469
SetI ASST 5 cut(s) 115, 269, 369, 452, 492
SfaNI GCATC 1 cut(s) 195
SfoI GGCGCC 1 cut(s) 414
Sfr274I CTCGAG 1 cut(s) 108
SfuI TTCGAA 1 cut(s) 485
SlaI CTCGAG 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 512
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 3 cut(s) 27, 121, 474
SsiI CCGC 2 cut(s) 246, 344
SspDI GGCGCC 1 cut(s) 412
SspMI CTAG 1 cut(s) 395
StyD4I CCNGG 1 cut(s) 328
TaqI TCGA 2 cut(s) 109, 485
TasI AATT 3 cut(s) 27, 121, 474
TfiI GAWTC 2 cut(s) 89, 230
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 469
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 1 cut(s) 469
XhoI CTCGAG 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 16
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.