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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2184, 2220 |
| AatII | GACGTC | 1 cut(s) | 1299 |
| Acc36I | ACCTGC | 4 cut(s) | 877, 878, 2369, 2440 |
| Acc65I | GGTACC | 1 cut(s) | 3051 |
| AccB1I | GGYRCC | 2 cut(s) | 895, 3051 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2471 |
| AccI | GTMKAC | 2 cut(s) | 1410, 2670 |
| AccII | CGCG | 3 cut(s) | 947, 949, 1217 |
| AccIII | TCCGGA | 1 cut(s) | 1960 |
| AciI | CCGC | 6 cut(s) | 810, 945, 1215, 2361, 2547, 2818 |
| AclWI | GGATC | 8 cut(s) | 787, 919, 1130, 2278, 2582, 2595, 2713, 3226 |
| AcoI | YGGCCR | 1 cut(s) | 991 |
| AcsI | RAATTY | 3 cut(s) | 1626, 2333, 3114 |
| AcuI | CTGAAG | 6 cut(s) | 87, 258, 567, 1813, 2058, 2249 |
| AcyI | GRCGYC | 1 cut(s) | 1296 |
| AdeI | CACNNNGTG | 1 cut(s) | 2444 |
| AfaI | GTAC | 3 cut(s) | 657, 2003, 3053 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 620, 980, 1589, 1967, 2111, 2471, 2896 |
| AgeI | ACCGGT | 1 cut(s) | 2489 |
| AjiI | CACGTC | 1 cut(s) | 2785 |
| AjnI | CCWGG | 5 cut(s) | 1588, 2210, 2634, 2907, 3015 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 808, 840 |
| Alw21I | GWGCWC | 2 cut(s) | 1393, 2881 |
| Alw26I | GTCTC | 5 cut(s) | 1113, 1767, 2539, 2604, 3235 |
| Alw44I | GTGCAC | 2 cut(s) | 1389, 2877 |
| AlwI | GGATC | 8 cut(s) | 787, 919, 1130, 2278, 2582, 2595, 2713, 3226 |
| Ama87I | CYCGRG | 1 cut(s) | 2085 |
| Aor13HI | TCCGGA | 1 cut(s) | 1960 |
| AoxI | GGCC | 4 cut(s) | 991, 1370, 2208, 2858 |
| ApaLI | GTGCAC | 2 cut(s) | 1389, 2877 |
| ApeKI | GCWGC | 7 cut(s) | 872, 1327, 1705, 2363, 2435, 2815, 2984 |
| ApoI | RAATTY | 3 cut(s) | 1626, 2333, 3114 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 788, 820, 1112, 1144, 2279, 2311, 2603, 2635 |
| AseI | ATTAAT | 1 cut(s) | 1811 |
| AsiGI | ACCGGT | 1 cut(s) | 2489 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1871, 2630 |
| Asp718I | GGTACC | 1 cut(s) | 3051 |
| AspLEI | GCGC | 4 cut(s) | 949, 951, 972, 1710 |
| AsuC2I | CCSGG | 3 cut(s) | 74, 1100, 1451 |
| AvaI | CYCGRG | 1 cut(s) | 2085 |
| BaeGI | GKGCMC | 2 cut(s) | 1393, 2881 |
| BamHI | GGATCC | 1 cut(s) | 2587 |
| BanI | GGYRCC | 2 cut(s) | 895, 3051 |
| BauI | CACGAG | 1 cut(s) | 1392 |
| BbsI | GAAGAC | 3 cut(s) | 11, 414, 1945 |
| Bbv12I | GWGCWC | 2 cut(s) | 1393, 2881 |
| BbvCI | CCTCAGC | 2 cut(s) | 883, 2374 |
| BbvI | GCAGC | 7 cut(s) | 859, 1339, 1717, 2350, 2422, 2827, 2996 |
| BccI | CCATC | 2 cut(s) | 1186, 3052 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3153, 3187 |
| BciT130I | CCWGG | 5 cut(s) | 1590, 2212, 2636, 2909, 3017 |
| BciVI | GTATCC | 1 cut(s) | 2782 |
| BclI | TGATCA | 2 cut(s) | 3136, 3181 |
| BcnI | CCSGG | 3 cut(s) | 74, 1100, 1451 |
| BcoDI | GTCTC | 5 cut(s) | 1113, 1767, 2539, 2604, 3235 |
| BfaI | CTAG | 7 cut(s) | 129, 354, 1178, 1211, 1661, 1847, 2276 |
| BfmI | CTRYAG | 2 cut(s) | 664, 1045 |
| BfoI | RGCGCY | 1 cut(s) | 1711 |
| BfuAI | ACCTGC | 4 cut(s) | 877, 878, 2369, 2440 |
| BfuI | GTATCC | 1 cut(s) | 2782 |
| BlpI | GCTNAGC | 1 cut(s) | 2679 |
| Bme1390I | CCNGG | 8 cut(s) | 74, 1100, 1451, 1590, 2212, 2636, 2909, 3017 |
| BmeT110I | CYCGRG | 1 cut(s) | 2085 |
| BmgBI | CACGTC | 1 cut(s) | 2785 |
| BmrFI | CCNGG | 8 cut(s) | 74, 1100, 1451, 1590, 2212, 2636, 2909, 3017 |
| BmrI | ACTGGG | 1 cut(s) | 86 |
| BmsI | GCATC | 8 cut(s) | 192, 1069, 1174, 1468, 1545, 1807, 2411, 3015 |
| BmuI | ACTGGG | 1 cut(s) | 86 |
| BpiI | GAAGAC | 3 cut(s) | 11, 414, 1945 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 830, 862, 2232, 2264, 2738, 2770 |
| BpmI | CTGGAG | 2 cut(s) | 1020, 2521 |
| Bpu10I | CCTNAGC | 3 cut(s) | 883, 2374, 2865 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2679 |
| BpuEI | CTTGAG | 3 cut(s) | 545, 1344, 2036 |
| BpuMI | CCSGG | 3 cut(s) | 74, 1100, 1451 |
| Bsa29I | ATCGAT | 1 cut(s) | 1719 |
| BsaHI | GRCGYC | 1 cut(s) | 1296 |
| BsaI | GGTCTC | 1 cut(s) | 3235 |
| BsaJI | CCNNGG | 9 cut(s) | 471, 619, 827, 1290, 1519, 2086, 2110, 2211, 2318 |
| BsaWI | WCCGGW | 3 cut(s) | 1732, 1960, 2489 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 620, 980, 1589, 1967, 2111, 2471, 2896 |
| Bse118I | RCCGGY | 1 cut(s) | 2489 |
| Bse1I | ACTGG | 9 cut(s) | 55, 92, 856, 994, 1003, 1627, 2347, 3115, 3169 |
| Bse3DI | GCAATG | 9 cut(s) | 965, 1498, 1653, 2456, 2613, 2986, 3085, 3141, 3165 |
| BseAI | TCCGGA | 1 cut(s) | 1960 |
| BseBI | CCWGG | 5 cut(s) | 1590, 2212, 2636, 2909, 3017 |
| BseCI | ATCGAT | 1 cut(s) | 1719 |
| BseDI | CCNNGG | 9 cut(s) | 471, 619, 827, 1290, 1519, 2086, 2110, 2211, 2318 |
| BseGI | GGATG | 9 cut(s) | 467, 1084, 1108, 1201, 1348, 1536, 1585, 2836, 3030 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 620, 980, 1589, 1967, 2111, 2471, 2896 |
| BseMI | GCAATG | 9 cut(s) | 965, 1498, 1653, 2456, 2613, 2986, 3085, 3141, 3165 |
| BseNI | ACTGG | 9 cut(s) | 55, 92, 856, 994, 1003, 1627, 2347, 3115, 3169 |
| BsePI | GCGCGC | 1 cut(s) | 947 |
| BseRI | GAGGAG | 4 cut(s) | 854, 1626, 3114, 3117 |
| BseSI | GKGCMC | 2 cut(s) | 1393, 2881 |
| BseXI | GCAGC | 7 cut(s) | 859, 1339, 1717, 2350, 2422, 2827, 2996 |
| BseYI | CCCAGC | 3 cut(s) | 123, 746, 2890 |
| BsgI | GTGCAG | 2 cut(s) | 1439, 2421 |
| Bsh1236I | CGCG | 3 cut(s) | 947, 949, 1217 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1334 |
| BshFI | GGCC | 4 cut(s) | 993, 1372, 2210, 2860 |
| BshNI | GGYRCC | 2 cut(s) | 895, 3051 |
| BshTI | ACCGGT | 1 cut(s) | 2489 |
| BshVI | ATCGAT | 1 cut(s) | 1719 |
| BsiEI | CGRYCG | 1 cut(s) | 1334 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1393, 2881 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2085 |
| BsiSI | CCGG | 6 cut(s) | 74, 1100, 1450, 1733, 1961, 2490 |
| BslFI | GGGAC | 2 cut(s) | 1743, 2711 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 620, 980, 1589, 1967, 2111, 2471, 2896 |
| BsmAI | GTCTC | 5 cut(s) | 1113, 1767, 2539, 2604, 3235 |
| BsmFI | GGGAC | 2 cut(s) | 1743, 2711 |
| BsmI | GAATGC | 3 cut(s) | 1275, 1481, 2969 |
| BsnI | GGCC | 4 cut(s) | 993, 1372, 2210, 2860 |
| Bso31I | GGTCTC | 1 cut(s) | 3235 |
| BsoBI | CYCGRG | 1 cut(s) | 2085 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1393, 2881 |
| Bsp13I | TCCGGA | 1 cut(s) | 1960 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2679 |
| Bsp19I | CCATGG | 5 cut(s) | 619, 827, 1290, 2110, 2318 |
| BspACI | CCGC | 6 cut(s) | 810, 945, 1215, 2361, 2547, 2818 |
| BspANI | GGCC | 4 cut(s) | 993, 1372, 2210, 2860 |
| BspDI | ATCGAT | 1 cut(s) | 1719 |
| BspEI | TCCGGA | 1 cut(s) | 1960 |
| BspFNI | CGCG | 3 cut(s) | 947, 949, 1217 |
| BspMI | ACCTGC | 4 cut(s) | 877, 878, 2369, 2440 |
| BspPI | GGATC | 8 cut(s) | 787, 919, 1130, 2278, 2582, 2595, 2713, 3226 |
| BspQI | GCTCTTC | 1 cut(s) | 3088 |
| BspT107I | GGYRCC | 2 cut(s) | 895, 3051 |
| BspTNI | GGTCTC | 1 cut(s) | 3235 |
| BsrDI | GCAATG | 9 cut(s) | 965, 1498, 1653, 2456, 2613, 2986, 3085, 3141, 3165 |
| BsrFI | RCCGGY | 1 cut(s) | 2489 |
| BsrI | ACTGG | 9 cut(s) | 55, 92, 856, 994, 1003, 1627, 2347, 3115, 3169 |
| BssAI | RCCGGY | 1 cut(s) | 2489 |
| BssECI | CCNNGG | 9 cut(s) | 471, 619, 827, 1290, 1519, 2086, 2110, 2211, 2318 |
| BssHII | GCGCGC | 1 cut(s) | 947 |
| BssNI | GRCGYC | 1 cut(s) | 1296 |
| BssSI | CACGAG | 1 cut(s) | 1392 |
| BssT1I | CCWWGG | 7 cut(s) | 471, 619, 827, 1290, 1519, 2110, 2318 |
| Bst2BI | CACGAG | 1 cut(s) | 1392 |
| Bst2UI | CCWGG | 5 cut(s) | 1590, 2212, 2636, 2909, 3017 |
| Bst6I | CTCTTC | 2 cut(s) | 2034, 3088 |
| BstACI | GRCGYC | 1 cut(s) | 1296 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2555 |
| BstDSI | CCRYGG | 5 cut(s) | 619, 827, 1290, 2110, 2318 |
| BstEII | GGTNACC | 1 cut(s) | 2026 |
| BstF5I | GGATG | 9 cut(s) | 467, 1084, 1108, 1201, 1348, 1536, 1585, 2836, 3030 |
| BstFNI | CGCG | 3 cut(s) | 947, 949, 1217 |
| BstH2I | RGCGCY | 1 cut(s) | 1711 |
| BstHHI | GCGC | 4 cut(s) | 949, 951, 972, 1710 |
| BstMAI | GTCTC | 5 cut(s) | 1113, 1767, 2539, 2604, 3235 |
| BstMCI | CGRYCG | 1 cut(s) | 1334 |
| BstNI | CCWGG | 5 cut(s) | 1590, 2212, 2636, 2909, 3017 |
| BstPI | GGTNACC | 1 cut(s) | 2026 |
| BstSCI | CCNGG | 8 cut(s) | 72, 1098, 1449, 1588, 2210, 2634, 2907, 3015 |
| BstSFI | CTRYAG | 2 cut(s) | 664, 1045 |
| BstSLI | GKGCMC | 2 cut(s) | 1393, 2881 |
| BstUI | CGCG | 3 cut(s) | 947, 949, 1217 |
| BstV1I | GCAGC | 7 cut(s) | 859, 1339, 1717, 2350, 2422, 2827, 2996 |
| BstV2I | GAAGAC | 3 cut(s) | 11, 414, 1945 |
| BstX2I | RGATCY | 1 cut(s) | 2587 |
| BstYI | RGATCY | 1 cut(s) | 2587 |
| Bsu15I | ATCGAT | 1 cut(s) | 1719 |
| BsuI | GTATCC | 1 cut(s) | 2782 |
| BsuRI | GGCC | 4 cut(s) | 993, 1372, 2210, 2860 |
| BsuTUI | ATCGAT | 1 cut(s) | 1719 |
| BtgI | CCRYGG | 5 cut(s) | 619, 827, 1290, 2110, 2318 |
| BtrI | CACGTC | 1 cut(s) | 2785 |
| BtsCI | GGATG | 9 cut(s) | 467, 1084, 1108, 1201, 1348, 1536, 1585, 2836, 3030 |
| BtsI | GCAGTG | 3 cut(s) | 84, 537, 2901 |
| BveI | ACCTGC | 4 cut(s) | 877, 878, 2369, 2440 |
| CfoI | GCGC | 4 cut(s) | 949, 951, 972, 1710 |
| Cfr10I | RCCGGY | 1 cut(s) | 2489 |
| ClaI | ATCGAT | 1 cut(s) | 1719 |
| CseI | GACGC | 5 cut(s) | 5, 1373, 2450, 2684, 2975 |
| CsiI | ACCWGGT | 1 cut(s) | 3015 |
| Csp6I | GTAC | 3 cut(s) | 656, 2002, 3052 |
| CspAI | ACCGGT | 1 cut(s) | 2489 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1349, 1384, 2766, 2801 |
| CviQI | GTAC | 3 cut(s) | 656, 2002, 3052 |
| DraI | TTTAAA | 2 cut(s) | 1243, 2734 |
| DraIII | CACNNNGTG | 1 cut(s) | 2444 |
| EaeI | YGGCCR | 1 cut(s) | 991 |
| Eam1104I | CTCTTC | 2 cut(s) | 2034, 3088 |
| EarI | CTCTTC | 2 cut(s) | 2034, 3088 |
| Eco130I | CCWWGG | 7 cut(s) | 471, 619, 827, 1290, 1519, 2110, 2318 |
| Eco147I | AGGCCT | 1 cut(s) | 2210 |
| Eco31I | GGTCTC | 1 cut(s) | 3235 |
| Eco32I | GATATC | 2 cut(s) | 1175, 3063 |
| Eco57I | CTGAAG | 6 cut(s) | 87, 258, 567, 1813, 2058, 2249 |
| Eco88I | CYCGRG | 1 cut(s) | 2085 |
| Eco91I | GGTNACC | 1 cut(s) | 2026 |
| EcoO109I | RGGNCCY | 2 cut(s) | 611, 1096 |
| EcoO65I | GGTNACC | 1 cut(s) | 2026 |
| EcoRII | CCWGG | 5 cut(s) | 1588, 2210, 2634, 2907, 3015 |
| EcoRV | GATATC | 2 cut(s) | 1175, 3063 |
| EcoT14I | CCWWGG | 7 cut(s) | 471, 619, 827, 1290, 1519, 2110, 2318 |
| EcoT22I | ATGCAT | 1 cut(s) | 1483 |
| ErhI | CCWWGG | 7 cut(s) | 471, 619, 827, 1290, 1519, 2110, 2318 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 396, 428 |
| FaqI | GGGAC | 2 cut(s) | 1743, 2711 |
| FauI | CCCGC | 1 cut(s) | 2368 |
| FbaI | TGATCA | 2 cut(s) | 3136, 3181 |
| FblI | GTMKAC | 2 cut(s) | 1410, 2670 |
| FokI | GGATG | 9 cut(s) | 454, 1091, 1115, 1208, 1355, 1523, 1572, 2843, 3037 |
| FspBI | CTAG | 7 cut(s) | 129, 354, 1178, 1211, 1661, 1847, 2276 |
| GlaI | GCGC | 4 cut(s) | 948, 950, 971, 1709 |
| GsaI | CCCAGC | 3 cut(s) | 127, 750, 2894 |
| GsuI | CTGGAG | 2 cut(s) | 1020, 2521 |
| HaeII | RGCGCY | 1 cut(s) | 1711 |
| HaeIII | GGCC | 4 cut(s) | 993, 1372, 2210, 2860 |
| HapII | CCGG | 6 cut(s) | 74, 1100, 1450, 1733, 1961, 2490 |
| HgaI | GACGC | 5 cut(s) | 5, 1373, 2450, 2684, 2975 |
| HhaI | GCGC | 4 cut(s) | 949, 951, 972, 1710 |
| Hin1I | GRCGYC | 1 cut(s) | 1296 |
| Hin6I | GCGC | 4 cut(s) | 947, 949, 970, 1708 |
| HinP1I | GCGC | 4 cut(s) | 947, 949, 970, 1708 |
| HincII | GTYRAC | 5 cut(s) | 1150, 2641, 2671, 2752, 2965 |
| HindII | GTYRAC | 5 cut(s) | 1150, 2641, 2671, 2752, 2965 |
| HindIII | AAGCTT | 8 cut(s) | 717, 767, 1021, 1904, 2258, 2512, 2522, 2651 |
| HpaII | CCGG | 6 cut(s) | 74, 1100, 1450, 1733, 1961, 2490 |
| Hpy99I | CGWCG | 6 cut(s) | 1301, 1389, 2675, 2678, 2877, 3093 |
| HpyAV | CCTTC | 7 cut(s) | 193, 211, 381, 427, 634, 1852, 2821 |
| HpyCH4IV | ACGT | 4 cut(s) | 1296, 1782, 2784, 2872 |
| HpySE526I | ACGT | 4 cut(s) | 1296, 1782, 2784, 2872 |
| Hsp92I | GRCGYC | 1 cut(s) | 1296 |
| HspAI | GCGC | 4 cut(s) | 947, 949, 970, 1708 |
| Kpn2I | TCCGGA | 1 cut(s) | 1960 |
| KpnI | GGTACC | 1 cut(s) | 3055 |
| Ksp22I | TGATCA | 2 cut(s) | 3136, 3181 |
| LguI | GCTCTTC | 1 cut(s) | 3088 |
| LmnI | GCTCC | 4 cut(s) | 475, 1639, 2240, 3127 |
| Lsp1109I | GCAGC | 7 cut(s) | 859, 1339, 1717, 2350, 2422, 2827, 2996 |
| LweI | GCATC | 8 cut(s) | 192, 1069, 1174, 1468, 1545, 1807, 2411, 3015 |
| MabI | ACCWGGT | 1 cut(s) | 3015 |
| MaeI | CTAG | 7 cut(s) | 129, 354, 1178, 1211, 1661, 1847, 2276 |
| MaeII | ACGT | 4 cut(s) | 1296, 1782, 2784, 2872 |
| MfeI | CAATTG | 2 cut(s) | 906, 2397 |
| MflI | RGATCY | 1 cut(s) | 2587 |
| MhlI | GDGCHC | 2 cut(s) | 1393, 2881 |
| MlyI | GAGTC | 5 cut(s) | 170, 1769, 2419, 2747, 3221 |
| MmeI | TCCRAC | 3 cut(s) | 1150, 2489, 2641 |
| Mph1103I | ATGCAT | 1 cut(s) | 1483 |
| MroI | TCCGGA | 1 cut(s) | 1960 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1871, 2630 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1541, 2473, 2805 |
| MspA1I | CMGCKG | 5 cut(s) | 863, 923, 2363, 2818, 2987 |
| MspI | CCGG | 6 cut(s) | 74, 1100, 1450, 1733, 1961, 2490 |
| MspR9I | CCNGG | 8 cut(s) | 74, 1100, 1451, 1590, 2212, 2636, 2909, 3017 |
| MunI | CAATTG | 2 cut(s) | 906, 2397 |
| Mva1269I | GAATGC | 3 cut(s) | 1275, 1481, 2969 |
| MvaI | CCWGG | 5 cut(s) | 1590, 2212, 2636, 2909, 3017 |
| MvnI | CGCG | 3 cut(s) | 947, 949, 1217 |
| NciI | CCSGG | 3 cut(s) | 74, 1100, 1451 |
| NcoI | CCATGG | 5 cut(s) | 619, 827, 1290, 2110, 2318 |
| NmeAIII | GCCGAG | 1 cut(s) | 1213 |
| NmuCI | GTSAC | 8 cut(s) | 221, 293, 349, 535, 931, 958, 1687, 2449 |
| NsiI | ATGCAT | 1 cut(s) | 1483 |
| PauI | GCGCGC | 1 cut(s) | 947 |
| PceI | AGGCCT | 1 cut(s) | 2210 |
| PciSI | GCTCTTC | 1 cut(s) | 3088 |
| PctI | GAATGC | 3 cut(s) | 1275, 1481, 2969 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1871, 2630 |
| PflFI | GACNNNGTC | 1 cut(s) | 2903 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2471 |
| PfoI | TCCNGGA | 1 cut(s) | 1449 |
| PinAI | ACCGGT | 1 cut(s) | 2489 |
| Ple19I | CGATCG | 1 cut(s) | 1334 |
| PleI | GAGTC | 5 cut(s) | 170, 1768, 2419, 2747, 3221 |
| PpsI | GAGTC | 5 cut(s) | 170, 1768, 2419, 2747, 3221 |
| PpuMI | RGGWCCY | 2 cut(s) | 611, 1096 |
| PshBI | ATTAAT | 1 cut(s) | 1811 |
| PsiI | TTATAA | 2 cut(s) | 2184, 2220 |
| Psp5II | RGGWCCY | 2 cut(s) | 611, 1096 |
| Psp6I | CCWGG | 5 cut(s) | 1588, 2210, 2634, 2907, 3015 |
| PspEI | GGTNACC | 1 cut(s) | 2026 |
| PspFI | CCCAGC | 3 cut(s) | 123, 746, 2890 |
| PspGI | CCWGG | 5 cut(s) | 1588, 2210, 2634, 2907, 3015 |
| PspPPI | RGGWCCY | 2 cut(s) | 611, 1096 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3024, 3056 |
| PsuI | RGATCY | 1 cut(s) | 2587 |
| PsyI | GACNNNGTC | 1 cut(s) | 2903 |
| PteI | GCGCGC | 1 cut(s) | 947 |
| PvuI | CGATCG | 1 cut(s) | 1334 |
| PvuII | CAGCTG | 3 cut(s) | 863, 923, 2987 |
| RsaI | GTAC | 3 cut(s) | 657, 2003, 3053 |
| RsaNI | GTAC | 3 cut(s) | 656, 2002, 3052 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1541, 2473, 2805 |
| SalI | GTCGAC | 1 cut(s) | 2669 |
| SapI | GCTCTTC | 1 cut(s) | 3088 |
| SchI | GAGTC | 5 cut(s) | 170, 1769, 2419, 2747, 3221 |
| ScrFI | CCNGG | 8 cut(s) | 74, 1100, 1451, 1590, 2212, 2636, 2909, 3017 |
| SduI | GDGCHC | 2 cut(s) | 1393, 2881 |
| SexAI | ACCWGGT | 1 cut(s) | 3015 |
| SfaNI | GCATC | 8 cut(s) | 192, 1069, 1174, 1468, 1545, 1807, 2411, 3015 |
| SfcI | CTRYAG | 2 cut(s) | 664, 1045 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1541, 2473, 2805 |
| SmlI | CTYRAG | 3 cut(s) | 524, 1359, 2015 |
| SmoI | CTYRAG | 3 cut(s) | 524, 1359, 2015 |
| SseBI | AGGCCT | 1 cut(s) | 2210 |
| SsiI | CCGC | 6 cut(s) | 810, 945, 1215, 2361, 2547, 2818 |
| SspI | AATATT | 1 cut(s) | 835 |
| SspMI | CTAG | 7 cut(s) | 129, 354, 1178, 1211, 1661, 1847, 2276 |
| StuI | AGGCCT | 1 cut(s) | 2210 |
| StyD4I | CCNGG | 8 cut(s) | 72, 1098, 1449, 1588, 2210, 2634, 2907, 3015 |
| StyI | CCWWGG | 7 cut(s) | 471, 619, 827, 1290, 1519, 2110, 2318 |
| TaiI | ACGT | 4 cut(s) | 1299, 1785, 2787, 2875 |
| TaqI | TCGA | 8 cut(s) | 1299, 1719, 2485, 2670, 2708, 2938, 3091, 3230 |
| TaqII | GACCGA | 1 cut(s) | 1025 |
| TauI | GCSGC | 3 cut(s) | 947, 1217, 2549 |
| TseFI | GTSAC | 8 cut(s) | 221, 293, 349, 535, 931, 958, 1687, 2449 |
| TseI | GCWGC | 7 cut(s) | 872, 1327, 1705, 2363, 2435, 2815, 2984 |
| Tsp45I | GTSAC | 8 cut(s) | 221, 293, 349, 535, 931, 958, 1687, 2449 |
| TspGWI | ACGGA | 1 cut(s) | 2219 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2903 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2471 |
| VneI | GTGCAC | 2 cut(s) | 1389, 2877 |
| VspI | ATTAAT | 1 cut(s) | 1811 |
| XapI | RAATTY | 3 cut(s) | 1626, 2333, 3114 |
| XbaI | TCTAGA | 1 cut(s) | 1177 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2776 |
| XmiI | GTMKAC | 2 cut(s) | 1410, 2670 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1871, 2630 |
| XspI | CTAG | 7 cut(s) | 129, 354, 1178, 1211, 1661, 1847, 2276 |
| ZraI | GACGTC | 1 cut(s) | 1297 |
| Zsp2I | ATGCAT | 1 cut(s) | 1483 |