Prupe.7G081300_v2.0.a1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001607
Physical Location & Seq
Reverse (-)
11639432 .. 11640581
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G081300.1

Sequence Viewer

Length: 549 bp
ATGGCTTTGAGAAACATCGCTACTCTTGTTTTCTTTGTGATGATGGCGTTCAGTGGTGCTTATTCTAGTTCTGTTTATAGAGTTGGAGATTCTGATGGGTGGACTTCGAGAGGCCTTGTTGATTACAACAAGTGGGCTTCAACGAAAGATTTTCACGTCGGCGACACTCTCATTTTTACTTACAACAATCAATTCCACAACGTGATGCAAGTTTCTGATCAAGACTTTGAATCTTGCAATGCTACATCTGCCATCTCATCTTATACATCTGGTTCAGACACAATTACCCTTAAAAGGCCCGGCCATTATTACTTTCTTTGTGGTGCTCCTGGCCATTGCCAAGCCGGACAAAAGGTTGACATCAAGGTCTCTCTGCCTGTTCCAGAAAATTTGATCCCAAGTCCAAGCCCGTCGTCACCTTATGGATCCTCATCACCTTCAACCTCTAATCCTATAGAGATGTCACCAAGCTCAACCCTAAGCAGTGCTCCACCTATTGGCTTGGCTTTTGCCACTGTTGTGTTGTTTCTTTTGGGTTTCGAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

183

Amino Acids

19.61

Weight (kDa)

5.38

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 365
AccB7I CCANNNNNTGG 1 cut(s) 497
AclWI GGATC 3 cut(s) 388, 420, 433
AcoI YGGCCR 2 cut(s) 301, 331
AcsI RAATTY 2 cut(s) 388, 542
AdeI CACNNNGTG 1 cut(s) 202
AfiI CCNNNNNNNGG 2 cut(s) 294, 497
AgsI TTSAA 3 cut(s) 141, 230, 441
AjiI CACGTC 1 cut(s) 157
AjnI CCWGG 1 cut(s) 328
AleI CACNNNNGTG 1 cut(s) 518
AluBI AGCT 1 cut(s) 471
AluI AGCT 1 cut(s) 471
Alw21I GWGCWC 2 cut(s) 328, 490
Alw26I GTCTC 1 cut(s) 373
AlwI GGATC 3 cut(s) 388, 420, 433
AoxI GGCC 4 cut(s) 112, 296, 301, 331
ApoI RAATTY 2 cut(s) 388, 542
AspS9I GGNCC 1 cut(s) 297
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 3 cut(s) 408, 426, 456
AsuII TTCGAA 1 cut(s) 540
BalI TGGCCA 1 cut(s) 333
BamHI GGATCC 1 cut(s) 425
Bbv12I GWGCWC 2 cut(s) 328, 490
BccI CCATC 3 cut(s) 37, 89, 260
BciT130I CCWGG 1 cut(s) 330
BclI TGATCA 1 cut(s) 217
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 373
BfaI CTAG 2 cut(s) 66, 547
BfmI CTRYAG 1 cut(s) 453
Bme1390I CCNGG 2 cut(s) 300, 330
BmgBI CACGTC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 427
BmrFI CCNGG 2 cut(s) 300, 330
BmsI GCATC 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 479
Bpu14I TTCGAA 1 cut(s) 540
BpuMI CCSGG 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 430
BsaI GGTCTC 1 cut(s) 373
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 497
Bse3DI GCAATG 2 cut(s) 244, 334
Bse8I GATNNNNATC 1 cut(s) 430
BseBI CCWGG 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 430
BseLI CCNNNNNNNGG 2 cut(s) 294, 497
BseMI GCAATG 2 cut(s) 244, 334
BshFI GGCC 4 cut(s) 114, 298, 303, 333
BsiHKAI GWGCWC 2 cut(s) 328, 490
BsiSI CCGG 2 cut(s) 300, 345
BslI CCNNNNNNNGG 2 cut(s) 294, 497
BsmAI GTCTC 1 cut(s) 373
BsnI GGCC 4 cut(s) 114, 298, 303, 333
Bso31I GGTCTC 1 cut(s) 373
Bsp119I TTCGAA 1 cut(s) 540
Bsp1286I GDGCHC 2 cut(s) 328, 490
Bsp143I GATC 3 cut(s) 217, 393, 425
BspANI GGCC 4 cut(s) 114, 298, 303, 333
BspLI GGNNCC 1 cut(s) 427
BspPI GGATC 3 cut(s) 388, 420, 433
BspT104I TTCGAA 1 cut(s) 540
BspTNI GGTCTC 1 cut(s) 373
BsrDI GCAATG 2 cut(s) 244, 334
BssMI GATC 3 cut(s) 217, 393, 425
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 517
BstBI TTCGAA 1 cut(s) 540
BstDEI CTNAG 1 cut(s) 479
BstKTI GATC 3 cut(s) 220, 396, 428
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 3 cut(s) 217, 393, 425
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 2 cut(s) 298, 328
BstSFI CTRYAG 1 cut(s) 453
BstX2I RGATCY 1 cut(s) 425
BstYI RGATCY 1 cut(s) 425
BsuRI GGCC 4 cut(s) 114, 298, 303, 333
BtrI CACGTC 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 3 cut(s) 58, 490, 513
Cfr13I GGNCC 1 cut(s) 297
DdeI CTNAG 1 cut(s) 479
DpnI GATC 3 cut(s) 219, 395, 427
DpnII GATC 3 cut(s) 217, 393, 425
DraIII CACNNNGTG 1 cut(s) 202
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 2 cut(s) 301, 331
Eco147I AGGCCT 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 542
EcoRII CCWGG 1 cut(s) 328
FaiI YATR 4 cut(s) 78, 264, 423, 455
FbaI TGATCA 1 cut(s) 217
FspBI CTAG 2 cut(s) 66, 547
HaeIII GGCC 4 cut(s) 114, 298, 303, 333
HapII CCGG 2 cut(s) 300, 345
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 2 cut(s) 89, 230
HpaII CCGG 2 cut(s) 300, 345
HphI GGTGA 3 cut(s) 408, 426, 456
Hpy166II GTNNAC 2 cut(s) 102, 358
Hpy188I TCNGA 3 cut(s) 94, 217, 277
Hpy188III TCNNGA 3 cut(s) 108, 221, 383
Hpy8I GTNNAC 2 cut(s) 102, 358
Hpy99I CGWCG 2 cut(s) 161, 415
HpyAV CCTTC 1 cut(s) 447
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4IV ACGT 2 cut(s) 156, 201
HpyCH4V TGCA 2 cut(s) 208, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 479
HpySE526I ACGT 2 cut(s) 156, 201
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 3 cut(s) 217, 393, 425
LmnI GCTCC 2 cut(s) 331, 493
LpnPI CCDG 7 cut(s) 255, 313, 315, 342, 358, 390, 396
LweI GCATC 1 cut(s) 195
MaeI CTAG 2 cut(s) 66, 547
MaeII ACGT 2 cut(s) 156, 201
MaeIII GTNAC 2 cut(s) 414, 462
MalI GATC 3 cut(s) 219, 395, 427
MboI GATC 3 cut(s) 217, 393, 425
MflI RGATCY 1 cut(s) 425
MhlI GDGCHC 2 cut(s) 328, 490
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 4 cut(s) 191, 282, 388, 542
MluNI TGGCCA 1 cut(s) 333
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 3 cut(s) 104, 439, 454
Mox20I TGGCCA 1 cut(s) 333
MscI TGGCCA 1 cut(s) 333
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 518
Msp20I TGGCCA 1 cut(s) 333
MspI CCGG 2 cut(s) 300, 345
MspR9I CCNGG 2 cut(s) 300, 330
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 248
NciI CCSGG 1 cut(s) 300
NdeII GATC 3 cut(s) 217, 393, 425
NlaIV GGNNCC 1 cut(s) 427
NmuCI GTSAC 2 cut(s) 414, 462
NspV TTCGAA 1 cut(s) 540
OliI CACNNNNGTG 1 cut(s) 518
PceI AGGCCT 1 cut(s) 114
PfeI GAWTC 2 cut(s) 89, 230
PflMI CCANNNNNTGG 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 427
PspPI GGNCC 1 cut(s) 297
PsuI RGATCY 1 cut(s) 425
RseI CAYNNNNRTG 1 cut(s) 518
SaqAI TTAA 1 cut(s) 291
Sau3AI GATC 3 cut(s) 217, 393, 425
Sau96I GGNCC 1 cut(s) 297
ScrFI CCNGG 2 cut(s) 300, 330
SduI GDGCHC 2 cut(s) 328, 490
SetI ASST 9 cut(s) 159, 204, 357, 369, 421, 439, 446, 473, 496
SfaNI GCATC 1 cut(s) 195
SfcI CTRYAG 1 cut(s) 453
SfuI TTCGAA 1 cut(s) 540
SmiMI CAYNNNNRTG 1 cut(s) 518
Sse9I AATT 4 cut(s) 191, 282, 388, 542
SseBI AGGCCT 1 cut(s) 114
SspMI CTAG 2 cut(s) 66, 547
StuI AGGCCT 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 298, 328
TaaI ACNGT 1 cut(s) 517
TaiI ACGT 2 cut(s) 159, 204
TaqI TCGA 2 cut(s) 107, 540
TasI AATT 4 cut(s) 191, 282, 388, 542
TfiI GAWTC 2 cut(s) 89, 230
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 3 cut(s) 58, 490, 520
TseFI GTSAC 2 cut(s) 414, 462
Tsp45I GTSAC 2 cut(s) 414, 462
TspRI CASTG 3 cut(s) 58, 490, 520
Van91I CCANNNNNTGG 1 cut(s) 497
XapI RAATTY 2 cut(s) 388, 542
XspI CTAG 2 cut(s) 66, 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.