Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001607

Physical Location & Seq

Genomic Coordinates Reverse (-)

12921964 .. 12922501

Gene Structure 538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G207500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

TCATTTGCTTTCATGAAAAGTATTACACTGAGATTTTTGGTGACAATGGCTCTCTATGGTGTTTGTTTTGGTGCTGTTTATAGAGTTGGTGACTCTAATGGCTGGACTTCTAGAGGCCTTGTTGATTACAATGAGTGGGCTTCAACAAAAGACTTCCATGTCAACGACACCCTCATATTTACTTACAACAATCAATTCCATAATGTGATGTCCGGCCATTTTTACTTTCTCTGTGGTACTCCTGGCCATTGCCAAGCCGGACAAAATGTCGACATCAACGTCACGCTGCCTATATCTGCAGATGGCTCGTTTGCAAGCCCAAGCCCGGCACCTTATGGAGCATCACCTCCTTCTGAAGTGGTGTTTCTAAGCAGTGCTTCTACTCTTCGTCTTTCGAAGCTTGAGTTCACCACTGTTGTGTTATGTGTTTTGGGTTTTGTACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

149

Amino Acids

16.13

Weight (kDa)

6.0

Isoelectric Point (pI)

24.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06070 FvH4_5g19880 FvH4_6g29420
malus_domestica	MD14G1053600.v1.1 MD14G1053700.v1.1 MD14G1053900.v1.1
prunus_persica	Prupe.4G207100_v2.0.a1 Prupe.4G207200_v2.0.a1 Prupe.4G207300_v2.0.a1 Prupe.4G207400_v2.0.a1 Prupe.4G207500_v2.0.a1 Prupe.7G081300_v2.0.a1 Prupe.7G081800_v2.0.a1 Prupe.7G082100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349461 RchiOBHm_Chr1g0368361 RchiOBHm_Chr7g0204671
rosa_laevigata	RLG00000003394 RLG00000003439 RLG00000027216 RLG00000028547
rosa_multiflora	Rmu_sc0001072.1_g000006 Rmu_sc0002495.1_g000010 Rmu_sc0002709.1_g000045 Rmu_sc0007104.1_g000009 Rmu_sc0009349.1_g000011
rosa_roxburghii	Rroxscaffold_3G00252880 Rroxscaffold_4G00288610 Rroxscaffold_4G00305530
rosa_rugosa	Rorug01G0203900 Rorug01G0341600 Rorug07G0085500 Rorug07G0088600
rosa_samantha	Rh1AG221300 Rh1AG348100 Rh1AG348600 Rh1BG187400 Rh1BG311100 Rh1CG206200 Rh1DG216700 Rh1DG342900 Rh7AG215400 Rh7BG212600 Rh7CG228500 Rh7DG223100
rosa_wichuraiana	Rw0G002410 Rw1G018810 Rw1G030990 Rw1G031020 Rw7G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	158, 278
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	270
AcoI	YGGCCR	2 cut(s)	214, 244
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	2 cut(s)	238, 441
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	144
AhdI	GACNNNNNGTC	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	241
AleI	CACNNNNGTG	1 cut(s)	416
AluBI	AGCT	1 cut(s)	400
AluI	AGCT	1 cut(s)	400
AoxI	GGCC	3 cut(s)	115, 214, 244
ApeKI	GCWGC	1 cut(s)	286
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	4 cut(s)	52, 101, 336, 400
AsuII	TTCGAA	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	328
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	1 cut(s)	296
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciT130I	CCWGG	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	326
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
Bme1390I	CCNGG	2 cut(s)	243, 326
BmeRI	GACNNNNNGTC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	2 cut(s)	243, 326
BmsI	GCATC	1 cut(s)	350
Bpu14I	TTCGAA	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	273
BshFI	GGCC	3 cut(s)	117, 216, 246
BshNI	GGYRCC	1 cut(s)	328
BsiSI	CCGG	3 cut(s)	213, 258, 326
BslI	CCNNNNNNNGG	1 cut(s)	325
BsnI	GGCC	3 cut(s)	117, 216, 246
Bsp119I	TTCGAA	1 cut(s)	395
BspANI	GGCC	3 cut(s)	117, 216, 246
BspCNI	CTCAG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	301
BspT104I	TTCGAA	1 cut(s)	395
BspT107I	GGYRCC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	390
BstBI	TTCGAA	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	29, 368
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	2 cut(s)	241, 324
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	117, 216, 246
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	3 cut(s)	26, 379, 411
Cac8I	GCNNGC	1 cut(s)	316
CciI	TCATGA	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	237, 440
CviAII	CATG	2 cut(s)	13, 158
CviQI	GTAC	2 cut(s)	237, 440
DdeI	CTNAG	2 cut(s)	29, 368
DrdI	GACNNNNNNGTC	2 cut(s)	158, 278
DriI	GACNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	2 cut(s)	158, 278
EaeI	YGGCCR	2 cut(s)	214, 244
Eam1104I	CTCTTC	1 cut(s)	390
Eam1105I	GACNNNNNGTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	390
Eco147I	AGGCCT	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	16, 161
FaiI	YATR	9 cut(s)	14, 57, 81, 159, 176, 201, 293, 336, 424
FalI	AAGNNNNNCTT	2 cut(s)	361, 393
FatI	CATG	2 cut(s)	12, 157
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	287
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	1 cut(s)	287
HaeIII	GGCC	3 cut(s)	117, 216, 246
HapII	CCGG	3 cut(s)	213, 258, 326
Hin1II	CATG	2 cut(s)	16, 161
HincII	GTYRAC	2 cut(s)	163, 271
HindII	GTYRAC	2 cut(s)	163, 271
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	3 cut(s)	213, 258, 326
HphI	GGTGA	4 cut(s)	52, 101, 336, 400
Hpy166II	GTNNAC	3 cut(s)	163, 271, 408
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	2 cut(s)	13, 111
Hpy8I	GTNNAC	3 cut(s)	163, 271, 408
HpyAV	CCTTC	1 cut(s)	360
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	2 cut(s)	299, 314
HpyF3I	CTNAG	2 cut(s)	29, 368
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	16, 161
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	6 cut(s)	88, 226, 228, 255, 271, 339
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	1 cut(s)	350
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	3 cut(s)	40, 89, 280
MboII	GAAGA	1 cut(s)	377
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	1 cut(s)	194
MluNI	TGGCCA	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	3 cut(s)	107, 182, 357
Mox20I	TGGCCA	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	246
MspI	CCGG	3 cut(s)	213, 258, 326
MspR9I	CCNGG	2 cut(s)	243, 326
MvaI	CCWGG	1 cut(s)	243
NciI	CCSGG	1 cut(s)	326
NlaIII	CATG	2 cut(s)	16, 161
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	3 cut(s)	40, 89, 280
NspV	TTCGAA	1 cut(s)	395
OliI	CACNNNNGTG	1 cut(s)	416
PagI	TCATGA	1 cut(s)	12
PceI	AGGCCT	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	288
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	330
PstI	CTGCAG	1 cut(s)	301
RsaI	GTAC	2 cut(s)	238, 441
RsaNI	GTAC	2 cut(s)	237, 440
RseI	CAYNNNNRTG	1 cut(s)	416
SalI	GTCGAC	1 cut(s)	269
SatI	GCNGC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	243, 326
SetI	ASST	4 cut(s)	282, 334, 349, 402
SfaNI	GCATC	1 cut(s)	350
SfcI	CTRYAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	1 cut(s)	194
SseBI	AGGCCT	1 cut(s)	117
SspMI	CTAG	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	241, 324
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	270, 395
TasI	AATT	1 cut(s)	194
TatI	WGTACW	1 cut(s)	439
TscAI	CASTG	3 cut(s)	33, 379, 418
TseFI	GTSAC	3 cut(s)	40, 89, 280
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	3 cut(s)	40, 89, 280
TspDTI	ATGAA	1 cut(s)	29
TspRI	CASTG	3 cut(s)	33, 379, 418
XbaI	TCTAGA	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.