Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007104.1

Orthogroup ID

OG0001607

Physical Location & Seq

Genomic Coordinates Reverse (-)

57223 .. 57675

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007104.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggcttgtttgggcgtttgttcgggtgcctcttcatcggaggctgttcacagtggagttgtttacaaagtcggtgactcaattgggtggagcatttttggtgattacaagaagtggacttccacaaaagagtttcacgtcggagatactctacttttcgcttatgataaggaatttcataacttgatggaagtgaatggagaagattaccaatcttgcaacacaaagtctcctctagcactctatgctgccggacttgattctatcccgcttgacaaaccgggtgactattacttcttctgcggtagaaatttcgaaccagactggtatgccatgactctcaaggaaccaggtcactgccaagcaggacaaaaacttcacgtcaaggtcactctaccaatatcagatcaccatttcgttgcaagtccaaccccagcaccagcgcccgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

150

Amino Acids

16.49

Weight (kDa)

5.39

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06070 FvH4_5g19880 FvH4_6g29420
malus_domestica	MD14G1053600.v1.1 MD14G1053700.v1.1 MD14G1053900.v1.1
prunus_persica	Prupe.4G207100_v2.0.a1 Prupe.4G207200_v2.0.a1 Prupe.4G207300_v2.0.a1 Prupe.4G207400_v2.0.a1 Prupe.4G207500_v2.0.a1 Prupe.7G081300_v2.0.a1 Prupe.7G081800_v2.0.a1 Prupe.7G082100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349461 RchiOBHm_Chr1g0368361 RchiOBHm_Chr7g0204671
rosa_laevigata	RLG00000003394 RLG00000003439 RLG00000027216 RLG00000028547
rosa_multiflora	Rmu_sc0001072.1_g000006 Rmu_sc0002495.1_g000010 Rmu_sc0002709.1_g000045 Rmu_sc0007104.1_g000009 Rmu_sc0009349.1_g000011
rosa_roxburghii	Rroxscaffold_3G00252880 Rroxscaffold_4G00288610 Rroxscaffold_4G00305530
rosa_rugosa	Rorug01G0203900 Rorug01G0341600 Rorug07G0085500 Rorug07G0088600
rosa_samantha	Rh1AG221300 Rh1AG348100 Rh1AG348600 Rh1BG187400 Rh1BG311100 Rh1CG206200 Rh1DG216700 Rh1DG342900 Rh7AG215400 Rh7BG212600 Rh7CG228500 Rh7DG223100
rosa_wichuraiana	Rw0G002410 Rw1G018810 Rw1G030990 Rw1G031020 Rw7G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	2 cut(s)	269, 303
AcsI	RAATTY	2 cut(s)	173, 310
AjiI	CACGTC	2 cut(s)	139, 382
AjnI	CCWGG	1 cut(s)	349
Alw26I	GTCTC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	173, 310
AspLEI	GCGC	1 cut(s)	445
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	4 cut(s)	86, 113, 296, 401
AsuII	TTCGAA	1 cut(s)	315
AvaI	CYCGRG	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	446
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	2 cut(s)	282, 351
BmeT110I	CYCGRG	1 cut(s)	446
BmgBI	CACGTC	2 cut(s)	139, 382
BmiI	GGNNCC	2 cut(s)	28, 348
BmrFI	CCNGG	2 cut(s)	282, 351
Bpu14I	TTCGAA	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	235
BseYI	CCCAGC	1 cut(s)	433
BshNI	GGYRCC	1 cut(s)	26
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	2 cut(s)	252, 281
BsmAI	GTCTC	1 cut(s)	234
BsoBI	CYCGRG	1 cut(s)	446
Bsp119I	TTCGAA	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	406
BspACI	CCGC	2 cut(s)	269, 303
BspLI	GGNNCC	2 cut(s)	28, 348
BspT104I	TTCGAA	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	329
BssMI	GATC	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstBI	TTCGAA	1 cut(s)	315
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	2 cut(s)	280, 349
BstV1I	GCAGC	1 cut(s)	235
BtrI	CACGTC	2 cut(s)	139, 382
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	2 cut(s)	58, 355
CfoI	GCGC	1 cut(s)	445
CsiI	ACCWGGT	1 cut(s)	349
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	2 cut(s)	5, 44
CviKI_1	RGCY	2 cut(s)	5, 44
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	349
FaeI	CATG	1 cut(s)	337
FaiI	YATR	5 cut(s)	165, 180, 246, 330, 335
FatI	CATG	1 cut(s)	333
FauI	CCCGC	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	1 cut(s)	249
GsaI	CCCAGC	1 cut(s)	437
HaeII	RGCGCY	1 cut(s)	446
HapII	CCGG	2 cut(s)	252, 281
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	1 cut(s)	337
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HinfI	GANTC	3 cut(s)	77, 260, 337
HpaII	CCGG	2 cut(s)	252, 281
HphI	GGTGA	4 cut(s)	86, 113, 296, 401
Hpy166II	GTNNAC	3 cut(s)	49, 64, 117
Hpy188I	TCNGA	3 cut(s)	40, 143, 406
Hpy8I	GTNNAC	3 cut(s)	49, 64, 117
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	2 cut(s)	138, 381
HpyCH4V	TGCA	2 cut(s)	219, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpySE526I	ACGT	2 cut(s)	138, 381
Hsp92II	CATG	1 cut(s)	337
HspAI	GCGC	1 cut(s)	443
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	8 cut(s)	265, 294, 310, 333, 336, 351, 363, 447
Lsp1109I	GCAGC	1 cut(s)	235
MabI	ACCWGGT	1 cut(s)	349
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	2 cut(s)	138, 381
MaeIII	GTNAC	4 cut(s)	74, 284, 353, 388
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	3 cut(s)	24, 215, 289
MfeI	CAATTG	1 cut(s)	81
MluCI	AATT	3 cut(s)	81, 173, 310
MlyI	GAGTC	2 cut(s)	71, 331
MmeI	TCCRAC	2 cut(s)	121, 452
MnlI	CCTC	3 cut(s)	34, 40, 243
MspI	CCGG	2 cut(s)	252, 281
MspR9I	CCNGG	2 cut(s)	282, 351
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	2 cut(s)	28, 348
NmuCI	GTSAC	4 cut(s)	74, 284, 353, 388
NspV	TTCGAA	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	2 cut(s)	71, 331
PpsI	GAGTC	2 cut(s)	71, 331
Psp6I	CCWGG	1 cut(s)	349
PspFI	CCCAGC	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	28, 348
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	406
SchI	GAGTC	2 cut(s)	71, 331
ScrFI	CCNGG	2 cut(s)	282, 351
SetI	ASST	4 cut(s)	141, 355, 384, 390
SexAI	ACCWGGT	1 cut(s)	349
SfuI	TTCGAA	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	3 cut(s)	81, 173, 310
SsiI	CCGC	2 cut(s)	269, 303
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	280, 349
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	2 cut(s)	141, 384
TaqI	TCGA	1 cut(s)	315
TasI	AATT	3 cut(s)	81, 173, 310
TfiI	GAWTC	1 cut(s)	260
TscAI	CASTG	2 cut(s)	58, 362
TseFI	GTSAC	4 cut(s)	74, 284, 353, 388
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	4 cut(s)	74, 284, 353, 388
TspDTI	ATGAA	2 cut(s)	24, 167
TspRI	CASTG	2 cut(s)	58, 362
XapI	RAATTY	2 cut(s)	173, 310
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.