Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001607

Physical Location & Seq

Genomic Coordinates Reverse (-)

24194648 .. 24195103

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028547

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTTTTCTGAGCACTTGTTCTGGTGCAACTGCATCGGGGGCTGTATACAGAGCAGGGGTTGTTTACCATGTTGGTGACTCCAGTGGGTGGAGTATCTTTCATGACTACAATAATTGGACTTCCACAAAAAACTTTCTTGTGGGAGATACTTTACTTTTTACCTACGATAAGATGTTCCATAATTTGATGCAAGTCGATGGGAAAGATTACCAATCGTGCAACACTAAGTCGCCCATGGTCGTCTATGATACTGGAGCTGATGCTATAAATCTTAAGAAACCTGGCGACTATTATTTCATCTGTGGTAGAAACTTCGAACCTGAGTGGTATGCTATGACTCTCAAGGAACCCGGCCACTGCCAAGCCGGGCAAAAACTTCACGTCAAGGTCACTCTACCGATACCAAATCATCATATGGTTGCAAGTCCCATCCCAGCACCAGCACCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

152

Amino Acids

16.74

Weight (kDa)

7.04

Isoelectric Point (pI)

24.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	31 - 104	6.1e-23	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06070 FvH4_5g19880 FvH4_6g29420
malus_domestica	MD14G1053600.v1.1 MD14G1053700.v1.1 MD14G1053900.v1.1
prunus_persica	Prupe.4G207100_v2.0.a1 Prupe.4G207200_v2.0.a1 Prupe.4G207300_v2.0.a1 Prupe.4G207400_v2.0.a1 Prupe.4G207500_v2.0.a1 Prupe.7G081300_v2.0.a1 Prupe.7G081800_v2.0.a1 Prupe.7G082100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349461 RchiOBHm_Chr1g0368361 RchiOBHm_Chr7g0204671
rosa_laevigata	RLG00000003394 RLG00000003439 RLG00000027216 RLG00000028547
rosa_multiflora	Rmu_sc0001072.1_g000006 Rmu_sc0002495.1_g000010 Rmu_sc0002709.1_g000045 Rmu_sc0007104.1_g000009 Rmu_sc0009349.1_g000011
rosa_roxburghii	Rroxscaffold_3G00252880 Rroxscaffold_4G00288610 Rroxscaffold_4G00305530
rosa_rugosa	Rorug01G0203900 Rorug01G0341600 Rorug07G0085500 Rorug07G0088600
rosa_samantha	Rh1AG221300 Rh1AG348100 Rh1AG348600 Rh1BG187400 Rh1BG311100 Rh1CG206200 Rh1DG216700 Rh1DG342900 Rh7AG215400 Rh7BG212600 Rh7CG228500 Rh7DG223100
rosa_wichuraiana	Rw0G002410 Rw1G018810 Rw1G030990 Rw1G031020 Rw7G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	355
AfiI	CCNNNNNNNGG	1 cut(s)	90
AflII	CTTAAG	1 cut(s)	275
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	283
AleI	CACNNNNGTG	1 cut(s)	451
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw21I	GWGCWC	1 cut(s)	17
AoxI	GGCC	1 cut(s)	355
AsuC2I	CCSGG	2 cut(s)	354, 370
AsuHPI	GGTGA	1 cut(s)	89
AsuII	TTCGAA	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	17
BccI	CCATC	2 cut(s)	194, 440
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BciT130I	CCWGG	1 cut(s)	285
BcnI	CCSGG	2 cut(s)	354, 370
BfrI	CTTAAG	1 cut(s)	275
Bme1390I	CCNGG	3 cut(s)	285, 354, 370
BmgBI	CACGTC	1 cut(s)	385
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	3 cut(s)	285, 354, 370
BmsI	GCATC	3 cut(s)	44, 180, 253
BpmI	CTGGAG	2 cut(s)	67, 276
Bpu14I	TTCGAA	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	2 cut(s)	354, 370
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse1I	ACTGG	2 cut(s)	84, 259
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	84, 259
BseYI	CCCAGC	1 cut(s)	436
BshFI	GGCC	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	354, 369
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	357
Bsp119I	TTCGAA	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp19I	CCATGG	1 cut(s)	237
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	351
BspT104I	TTCGAA	1 cut(s)	318
BspTI	CTTAAG	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	84, 259
BssECI	CCNNGG	1 cut(s)	237
BssNAI	GTATAC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	237
Bst1107I	GTATAC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	285
BstAFI	CTTAAG	1 cut(s)	275
BstBI	TTCGAA	1 cut(s)	318
BstDEI	CTNAG	3 cut(s)	11, 228, 324
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	3 cut(s)	283, 352, 368
BstZ17I	GTATAC	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	237
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	432
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	2 cut(s)	91, 358
CciI	TCATGA	1 cut(s)	103
CviAII	CATG	3 cut(s)	71, 104, 238
CviJI	RGCY	5 cut(s)	5, 44, 260, 357, 368
CviKI_1	RGCY	5 cut(s)	5, 44, 260, 357, 368
DdeI	CTNAG	3 cut(s)	11, 228, 324
EaeI	YGGCCR	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	3 cut(s)	74, 107, 241
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	3 cut(s)	70, 103, 237
FauNDI	CATATG	1 cut(s)	417
FblI	GTMKAC	1 cut(s)	48
FokI	GGATG	1 cut(s)	419
GsaI	CCCAGC	1 cut(s)	440
GsuI	CTGGAG	2 cut(s)	67, 276
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	2 cut(s)	354, 369
Hin1II	CATG	3 cut(s)	74, 107, 241
HinfI	GANTC	2 cut(s)	80, 340
HpaII	CCGG	2 cut(s)	354, 369
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	49, 67
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	2 cut(s)	49, 67
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	5 cut(s)	29, 35, 193, 222, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	3 cut(s)	11, 228, 324
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	74, 107, 241
LmnI	GCTCC	1 cut(s)	257
LweI	GCATC	3 cut(s)	44, 180, 253
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	77, 391
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	2 cut(s)	115, 184
MlyI	GAGTC	2 cut(s)	74, 334
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	2 cut(s)	75, 451
MspCI	CTTAAG	1 cut(s)	275
MspI	CCGG	2 cut(s)	354, 369
MspR9I	CCNGG	3 cut(s)	285, 354, 370
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	2 cut(s)	354, 370
NcoI	CCATGG	1 cut(s)	237
NdeI	CATATG	1 cut(s)	417
NlaIII	CATG	3 cut(s)	74, 107, 241
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	2 cut(s)	77, 391
NspV	TTCGAA	1 cut(s)	318
OliI	CACNNNNGTG	1 cut(s)	451
PagI	TCATGA	1 cut(s)	103
PflMI	CCANNNNNTGG	1 cut(s)	90
PleI	GAGTC	2 cut(s)	74, 334
PpsI	GAGTC	2 cut(s)	74, 334
Psp6I	CCWGG	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	351
RseI	CAYNNNNRTG	2 cut(s)	75, 451
SaqAI	TTAA	1 cut(s)	276
SchI	GAGTC	2 cut(s)	74, 334
ScrFI	CCNGG	3 cut(s)	285, 354, 370
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	6 cut(s)	167, 262, 286, 325, 387, 393
SfaNI	GCATC	3 cut(s)	44, 180, 253
SfuI	TTCGAA	1 cut(s)	318
SmiMI	CAYNNNNRTG	2 cut(s)	75, 451
SmlI	CTYRAG	2 cut(s)	275, 344
SmoI	CTYRAG	2 cut(s)	275, 344
Sse9I	AATT	2 cut(s)	115, 184
StyD4I	CCNGG	3 cut(s)	283, 352, 368
StyI	CCWWGG	1 cut(s)	237
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	2 cut(s)	198, 318
TasI	AATT	2 cut(s)	115, 184
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	91, 365
TseFI	GTSAC	2 cut(s)	77, 391
Tsp45I	GTSAC	2 cut(s)	77, 391
TspDTI	ATGAA	2 cut(s)	92, 289
TspRI	CASTG	2 cut(s)	91, 365
Van91I	CCANNNNNTGG	1 cut(s)	90
Vha464I	CTTAAG	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.