Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009349.1

Orthogroup ID

OG0001607

Physical Location & Seq

Genomic Coordinates Forward (+)

38260 .. 38514

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009349.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atggaagtgaccagagaagattatcaatcctgcaacacaaggtatccgatggccttctacattgctggacttgatgctatccctcttgaaaactggacgactactacatctgtggtagaaatttcgaaccacagcggtatgctaggactctcaaggaactatggccactgccaagcaagacaaaaacttcacgccaaggtcactctacaaattgatcaccacttcactgcaagtccaaccccagtaccagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

84

Amino Acids

9.48

Weight (kDa)

6.16

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06070 FvH4_5g19880 FvH4_6g29420
malus_domestica	MD14G1053600.v1.1 MD14G1053700.v1.1 MD14G1053900.v1.1
prunus_persica	Prupe.4G207100_v2.0.a1 Prupe.4G207200_v2.0.a1 Prupe.4G207300_v2.0.a1 Prupe.4G207400_v2.0.a1 Prupe.4G207500_v2.0.a1 Prupe.7G081300_v2.0.a1 Prupe.7G081800_v2.0.a1 Prupe.7G082100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349461 RchiOBHm_Chr1g0368361 RchiOBHm_Chr7g0204671
rosa_laevigata	RLG00000003394 RLG00000003439 RLG00000027216 RLG00000028547
rosa_multiflora	Rmu_sc0001072.1_g000006 Rmu_sc0002495.1_g000010 Rmu_sc0002709.1_g000045 Rmu_sc0007104.1_g000009 Rmu_sc0009349.1_g000011
rosa_roxburghii	Rroxscaffold_3G00252880 Rroxscaffold_4G00288610 Rroxscaffold_4G00305530
rosa_rugosa	Rorug01G0203900 Rorug01G0341600 Rorug07G0085500 Rorug07G0088600
rosa_samantha	Rh1AG221300 Rh1AG348100 Rh1AG348600 Rh1BG187400 Rh1BG311100 Rh1CG206200 Rh1DG216700 Rh1DG342900 Rh7AG215400 Rh7BG212600 Rh7CG228500 Rh7DG223100
rosa_wichuraiana	Rw0G002410 Rw1G018810 Rw1G030990 Rw1G031020 Rw7G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	120
AfaI	GTAC	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	89
AoxI	GGCC	2 cut(s)	51, 163
ApoI	RAATTY	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	209
AsuII	TTCGAA	1 cut(s)	125
BaeI	ACNNNNGTAYC	1 cut(s)	228
BalI	TGGCCA	1 cut(s)	165
BccI	CCATC	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	54
BclI	TGATCA	1 cut(s)	214
BfaI	CTAG	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	54
BmrI	ACTGGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	64
BmuI	ACTGGG	1 cut(s)	236
Bpu14I	TTCGAA	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	195
Bse1I	ACTGG	2 cut(s)	98, 242
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	98, 242
BshFI	GGCC	2 cut(s)	53, 165
BsnI	GGCC	2 cut(s)	53, 165
Bsp119I	TTCGAA	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	53, 165
BspT104I	TTCGAA	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	98, 242
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	195
BstBI	TTCGAA	1 cut(s)	125
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	53, 165
BtsI	GCAGTG	2 cut(s)	166, 225
BtsIMutI	CAGTG	2 cut(s)	166, 225
Csp6I	GTAC	1 cut(s)	245
CviJI	RGCY	2 cut(s)	53, 165
CviKI_1	RGCY	2 cut(s)	53, 165
CviQI	GTAC	1 cut(s)	245
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaiI	YATR	2 cut(s)	140, 162
FbaI	TGATCA	1 cut(s)	214
FspBI	CTAG	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	53, 165
HinfI	GANTC	1 cut(s)	147
HphI	GGTGA	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	33, 230
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	214
LpnPI	CCDG	4 cut(s)	25, 43, 51, 79
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	7, 199
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	2 cut(s)	120, 210
MluNI	TGGCCA	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	1 cut(s)	93
Mox20I	TGGCCA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	135
NdeII	GATC	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	7, 199
NspV	TTCGAA	1 cut(s)	125
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
Sau3AI	GATC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	141
SetI	ASST	2 cut(s)	44, 201
SfaNI	GCATC	1 cut(s)	64
SfuI	TTCGAA	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	2 cut(s)	120, 210
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	195
TaqI	TCGA	1 cut(s)	125
TasI	AATT	2 cut(s)	120, 210
TscAI	CASTG	2 cut(s)	173, 232
TseFI	GTSAC	2 cut(s)	7, 199
Tsp45I	GTSAC	2 cut(s)	7, 199
TspRI	CASTG	2 cut(s)	173, 232
XapI	RAATTY	1 cut(s)	120
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.