Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001607

Physical Location & Seq

Genomic Coordinates Reverse (-)

12911111 .. 12911766

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G207200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCTTTCAGAAAAAGTACATTGATTTTCTTGGTTATGCTTGCTTTATGTGGTGTTTGTTTTGGTGCTGTGTATAGAGTTGGTGATTCTAATGGGTGGACTTCTAGAGGCCTTGTTGACTACAACGAGTGGGCTTCAACAAAAGACTTCCATGTTAACGATACACTCATATTTGCTTACAACAATCAATTCCACAACGTGATGCAAGTTACTACCCAAGATTTTGAATCTTGCAACCCTAACTCTCCGATCGCAGTCTATTCCTCGGGATCTGACACCATCACCCTTGATAGGCCTGGCAACTTTTACTTTTTGTGTGGTGCTCCTGGTCATTGTCGAGCCGGACAAAGGGTTGAGATCATGGCCACGCTACCTACACCGGATGATTCCTCACCTTCAGCCTCTCCTACTGAAGCGATTTCGGCAAGCTCTGCTCTAAGTAATGGTCTTGCACTTCATTTTTCGAAACTTGGGTTGGGTGTCACCATGTTTGTGTTATCTACTCTTTTGGGTTTTGTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

175

Amino Acids

18.8

Weight (kDa)

5.38

Isoelectric Point (pI)

22.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06070 FvH4_5g19880 FvH4_6g29420
malus_domestica	MD14G1053600.v1.1 MD14G1053700.v1.1 MD14G1053900.v1.1
prunus_persica	Prupe.4G207100_v2.0.a1 Prupe.4G207200_v2.0.a1 Prupe.4G207300_v2.0.a1 Prupe.4G207400_v2.0.a1 Prupe.4G207500_v2.0.a1 Prupe.7G081300_v2.0.a1 Prupe.7G081800_v2.0.a1 Prupe.7G082100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349461 RchiOBHm_Chr1g0368361 RchiOBHm_Chr7g0204671
rosa_laevigata	RLG00000003394 RLG00000003439 RLG00000027216 RLG00000028547
rosa_multiflora	Rmu_sc0001072.1_g000006 Rmu_sc0002495.1_g000010 Rmu_sc0002709.1_g000045 Rmu_sc0007104.1_g000009 Rmu_sc0009349.1_g000011
rosa_roxburghii	Rroxscaffold_3G00252880 Rroxscaffold_4G00288610 Rroxscaffold_4G00305530
rosa_rugosa	Rorug01G0203900 Rorug01G0341600 Rorug07G0085500 Rorug07G0088600
rosa_samantha	Rh1AG221300 Rh1AG348100 Rh1AG348600 Rh1BG187400 Rh1BG311100 Rh1CG206200 Rh1DG216700 Rh1DG342900 Rh7AG215400 Rh7BG212600 Rh7CG228500 Rh7DG223100
rosa_wichuraiana	Rw0G002410 Rw1G018810 Rw1G030990 Rw1G031020 Rw7G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	277
AcoI	YGGCCR	1 cut(s)	363
AcuI	CTGAAG	2 cut(s)	381, 432
AdeI	CACNNNGTG	1 cut(s)	199
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	2 cut(s)	291, 348
AgsI	TTSAA	2 cut(s)	138, 227
AjnI	CCWGG	2 cut(s)	295, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	1 cut(s)	429
AluI	AGCT	1 cut(s)	429
Alw21I	GWGCWC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	3 cut(s)	109, 293, 363
AsuHPI	GGTGA	4 cut(s)	95, 274, 384, 475
AsuII	TTCGAA	1 cut(s)	464
AvaI	CYCGRG	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	325
BccI	CCATC	1 cut(s)	287
BciT130I	CCWGG	2 cut(s)	297, 327
BfaI	CTAG	1 cut(s)	105
Bme1390I	CCNGG	2 cut(s)	297, 327
BmeT110I	CYCGRG	1 cut(s)	265
BmrFI	CCNGG	2 cut(s)	297, 327
BmsI	GCATC	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 348
BseBI	CCWGG	2 cut(s)	297, 327
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	2 cut(s)	291, 348
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	3 cut(s)	111, 295, 365
BsiEI	CGRYCG	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	342, 380
BslI	CCNNNNNNNGG	2 cut(s)	291, 348
BsnI	GGCC	3 cut(s)	111, 295, 365
BsoBI	CYCGRG	1 cut(s)	265
Bsp119I	TTCGAA	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	3 cut(s)	249, 269, 357
BspANI	GGCC	3 cut(s)	111, 295, 365
BspPI	GGATC	1 cut(s)	277
BspT104I	TTCGAA	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	3 cut(s)	249, 269, 357
Bst2UI	CCWGG	2 cut(s)	297, 327
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	2 cut(s)	42, 427
BstDEI	CTNAG	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	3 cut(s)	252, 272, 360
BstMBI	GATC	3 cut(s)	249, 269, 357
BstMCI	CGRYCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 431
BstNI	CCWGG	2 cut(s)	297, 327
BstSCI	CCNGG	2 cut(s)	295, 325
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BsuRI	GGCC	3 cut(s)	111, 295, 365
BtsCI	GGATG	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	42, 427
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	3 cut(s)	152, 361, 487
CviJI	RGCY	8 cut(s)	5, 111, 134, 295, 341, 365, 401, 429
CviKI_1	RGCY	8 cut(s)	5, 111, 134, 295, 341, 365, 401, 429
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	3 cut(s)	251, 271, 359
DpnII	GATC	3 cut(s)	249, 269, 357
DraIII	CACNNNGTG	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	363
Eco147I	AGGCCT	2 cut(s)	111, 295
Eco57I	CTGAAG	2 cut(s)	381, 432
Eco88I	CYCGRG	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	295, 325
FaeI	CATG	3 cut(s)	155, 364, 490
FaiI	YATR	7 cut(s)	38, 49, 75, 153, 170, 362, 488
FatI	CATG	3 cut(s)	151, 360, 486
FokI	GGATG	1 cut(s)	395
FspBI	CTAG	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	111, 295, 365
HapII	CCGG	2 cut(s)	342, 380
Hin1II	CATG	3 cut(s)	155, 364, 490
HincII	GTYRAC	2 cut(s)	118, 157
HindII	GTYRAC	2 cut(s)	118, 157
HinfI	GANTC	3 cut(s)	86, 227, 386
HpaI	GTTAAC	1 cut(s)	157
HpaII	CCGG	2 cut(s)	342, 380
HphI	GGTGA	4 cut(s)	95, 274, 384, 475
Hpy166II	GTNNAC	3 cut(s)	99, 118, 157
Hpy188I	TCNGA	3 cut(s)	11, 249, 274
Hpy188III	TCNNGA	2 cut(s)	105, 267
Hpy8I	GTNNAC	3 cut(s)	99, 118, 157
HpyAV	CCTTC	1 cut(s)	405
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	3 cut(s)	205, 234, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 431
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	155, 364, 490
KspAI	GTTAAC	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	249, 269, 357
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	6 cut(s)	282, 309, 312, 339, 355, 393
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	208, 481
MalI	GATC	3 cut(s)	251, 271, 359
MboI	GATC	3 cut(s)	249, 269, 357
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	365
MnlI	CCTC	4 cut(s)	101, 274, 400, 412
Mox20I	TGGCCA	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	365
MspI	CCGG	2 cut(s)	342, 380
MspR9I	CCNGG	2 cut(s)	297, 327
MvaI	CCWGG	2 cut(s)	297, 327
MwoI	GCNNNNNNNGC	2 cut(s)	422, 431
NdeII	GATC	3 cut(s)	249, 269, 357
NlaIII	CATG	3 cut(s)	155, 364, 490
NmuCI	GTSAC	1 cut(s)	481
NspV	TTCGAA	1 cut(s)	464
PceI	AGGCCT	2 cut(s)	111, 295
PfeI	GAWTC	3 cut(s)	86, 227, 386
Ple19I	CGATCG	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	295, 325
PspGI	CCWGG	2 cut(s)	295, 325
PsuI	RGATCY	1 cut(s)	269
PvuI	CGATCG	1 cut(s)	252
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	3 cut(s)	249, 269, 357
ScrFI	CCNGG	2 cut(s)	297, 327
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	4 cut(s)	201, 376, 397, 431
SfaNI	GCATC	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	1 cut(s)	188
SseBI	AGGCCT	2 cut(s)	111, 295
SspMI	CTAG	1 cut(s)	105
StuI	AGGCCT	2 cut(s)	111, 295
StyD4I	CCNGG	2 cut(s)	295, 325
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	337, 464
TasI	AATT	1 cut(s)	188
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	3 cut(s)	86, 227, 386
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	1 cut(s)	446
XbaI	TCTAGA	1 cut(s)	104
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.