Rorug07G0085500

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001607
Physical Location & Seq
Forward (+)
6720172 .. 6721605
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0085500.1

Sequence Viewer

Length: 939 bp
ATGAACAAGCTTTTGGGCAGTCATCTAGTGGCCCGTTTGGGTCTTTCGGTGCTTCATCCTCACCGGCTTTTGGAACTACAATGTCTGCTTTTGGAGCATCTTCTGCTCCCTGCCTTCGGAGGACCTCACCTACCAGGTACCACTTTTGATCAGAAGCCTAATTTGGGAGCATTTTGGTCTAGTCCTGCTCTGACAAGTCCTTTTGGAAGCATGATTCAACCATCACAGCCAGCATTTAGGAGCAATATGTTTGGTAGCTCCACGCCATTTGGTGGAAGTCAGTCTGTATTTGGTACTACTAGCACCACTAGCACCCCGACCTTTGGTGCCACAACTCTGCCTTCTGGGGCCATTGGCACCCTACCATTCGGTGCTATAGGTTCTCAGGCCTTTGGTGGTACAACTACTCCGGTCTTTGGCTCAACAAGGAGTCCTGCATTGGGGGATTCAAGAACCCCAATGTTTAGTTCATCTAGCTCCCCTTTTGCTGCTACTACATCAAGTGCACCTGGTTTTAGTTCTTTAAGAGCTCAAGCAACAATGCCAACAGTCGGGAATACTGGCTTTTGGAATTCAGCTTTTGGGGGCGACCGTGGGGGAAGTAGAGTGGCTACATACACAGGCACACTTGCACCAGATTCTTTGGGTAATGGGAATACTGCAACAGTGGTGAAATTGATGTCAATATCAGCTATGCCAGTTTATATAAATAAAAGTCATGAAGAATTGCACCATGAGGATTATCACTTGGGGGATAAAGGTGGACTGACTCCTGCTGGTGGCAGTGGGTTTGGCACCTCTACCACAGAGTCAGGCCCGTTGAATCCTGCATCAGTATTTGCTCAACATTTTAATTCCTCAACTTCATTTAGTATATTTTCTCCACAGATCCCATTGACTTTTACTGATTTCGGAATTTCATCTTCACCATTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

312

Amino Acids

32.12

Weight (kDa)

7.17

Isoelectric Point (pI)

54.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 137
AccB1I GGYRCC 4 cut(s) 137, 326, 356, 794
AccB7I CCANNNNNTGG 1 cut(s) 272
AclWI GGATC 1 cut(s) 883
AcsI RAATTY 2 cut(s) 571, 915
AfaI GTAC 3 cut(s) 139, 295, 400
AfiI CCNNNNNNNGG 9 cut(s) 70, 116, 164, 272, 323, 416, 440, 551, 779
AgsI TTSAA 3 cut(s) 218, 450, 823
AjnI CCWGG 2 cut(s) 133, 508
AjuI GAANNNNNNNTTGG 5 cut(s) 28, 146, 178, 451, 483
AluBI AGCT 6 cut(s) 10, 258, 477, 530, 578, 692
AluI AGCT 6 cut(s) 10, 258, 477, 530, 578, 692
Alw21I GWGCWC 2 cut(s) 508, 532
Alw44I GTGCAC 1 cut(s) 504
AlwI GGATC 1 cut(s) 883
AoxI GGCC 4 cut(s) 30, 348, 387, 814
ApaLI GTGCAC 1 cut(s) 504
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 2 cut(s) 571, 915
Asp718I GGTACC 1 cut(s) 137
AspS9I GGNCC 4 cut(s) 31, 122, 348, 815
AsuHPI GGTGA 4 cut(s) 53, 119, 682, 918
AvaII GGWCC 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 508
BanI GGYRCC 4 cut(s) 137, 326, 356, 794
BanII GRGCYC 1 cut(s) 532
Bbv12I GWGCWC 2 cut(s) 508, 532
BbvI GCAGC 1 cut(s) 475
BccI CCATC 1 cut(s) 229
BciT130I CCWGG 2 cut(s) 135, 510
BclI TGATCA 1 cut(s) 148
BfaI CTAG 5 cut(s) 26, 180, 300, 309, 474
BfmI CTRYAG 1 cut(s) 375
BisI GCNGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 490
Bme1390I CCNGG 2 cut(s) 135, 510
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 4 cut(s) 31, 122, 348, 815
BmiI GGNNCC 5 cut(s) 139, 328, 349, 358, 796
BmrFI CCNGG 2 cut(s) 135, 510
BmsI GCATC 2 cut(s) 106, 839
BpuEI CTTGAG 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 592
BsaWI WCCGGW 1 cut(s) 409
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 9 cut(s) 70, 116, 164, 272, 323, 416, 440, 551, 779
Bse118I RCCGGY 1 cut(s) 63
Bse1I ACTGG 2 cut(s) 565, 698
BseBI CCWGG 2 cut(s) 135, 510
BseDI CCNNGG 1 cut(s) 592
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 9 cut(s) 70, 116, 164, 272, 323, 416, 440, 551, 779
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 2 cut(s) 565, 698
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 1 cut(s) 475
Bsh1285I CGRYCG 1 cut(s) 592
BshFI GGCC 4 cut(s) 32, 350, 389, 816
BshNI GGYRCC 4 cut(s) 137, 326, 356, 794
BsiEI CGRYCG 1 cut(s) 592
BsiHKAI GWGCWC 2 cut(s) 508, 532
BsiSI CCGG 2 cut(s) 64, 410
BslI CCNNNNNNNGG 9 cut(s) 70, 116, 164, 272, 323, 416, 440, 551, 779
BsnI GGCC 4 cut(s) 32, 350, 389, 816
Bsp1286I GDGCHC 2 cut(s) 508, 532
Bsp143I GATC 2 cut(s) 148, 888
BspANI GGCC 4 cut(s) 32, 350, 389, 816
BspCNI CTCAG 1 cut(s) 397
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 5 cut(s) 139, 328, 349, 358, 796
BspPI GGATC 1 cut(s) 883
BspT107I GGYRCC 4 cut(s) 137, 326, 356, 794
BsrFI RCCGGY 1 cut(s) 63
BsrI ACTGG 2 cut(s) 565, 698
BssAI RCCGGY 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 592
BssMI GATC 2 cut(s) 148, 888
Bst2UI CCWGG 2 cut(s) 135, 510
Bst4CI ACNGT 3 cut(s) 550, 593, 667
BstAPI GCANNNNNTGC 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 384
BstDSI CCRYGG 1 cut(s) 592
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 2 cut(s) 151, 891
BstMBI GATC 2 cut(s) 148, 888
BstMCI CGRYCG 1 cut(s) 592
BstMWI GCNNNNNNNGC 3 cut(s) 94, 103, 309
BstNI CCWGG 2 cut(s) 135, 510
BstSCI CCNGG 2 cut(s) 133, 508
BstSFI CTRYAG 1 cut(s) 375
BstSLI GKGCMC 1 cut(s) 508
BstV1I GCAGC 1 cut(s) 475
BstX2I RGATCY 1 cut(s) 888
BstYI RGATCY 1 cut(s) 888
BsuRI GGCC 4 cut(s) 32, 350, 389, 816
BtgI CCRYGG 1 cut(s) 592
BtsCI GGATG 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 790
BtsIMutI CAGTG 2 cut(s) 672, 790
Cac8I GCNNGC 1 cut(s) 231
CciI TCATGA 1 cut(s) 718
Cfr10I RCCGGY 1 cut(s) 63
Cfr13I GGNCC 4 cut(s) 31, 122, 348, 815
CsiI ACCWGGT 2 cut(s) 133, 508
Csp6I GTAC 3 cut(s) 138, 294, 399
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 3 cut(s) 211, 719, 734
CviQI GTAC 3 cut(s) 138, 294, 399
DdeI CTNAG 1 cut(s) 384
DpnI GATC 2 cut(s) 150, 890
DpnII GATC 2 cut(s) 148, 888
Ecl136II GAGCTC 1 cut(s) 530
Eco147I AGGCCT 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 530
EcoICRI GAGCTC 1 cut(s) 530
EcoO109I RGGNCCY 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 571
EcoRII CCWGG 2 cut(s) 133, 508
EcoT38I GRGCYC 1 cut(s) 532
FaeI CATG 3 cut(s) 214, 722, 737
FatI CATG 3 cut(s) 210, 718, 733
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 1 cut(s) 42
FriOI GRGCYC 1 cut(s) 532
Fsp4HI GCNGC 1 cut(s) 489
FspBI CTAG 5 cut(s) 26, 180, 300, 309, 474
GluI GCNGC 1 cut(s) 489
HaeIII GGCC 4 cut(s) 32, 350, 389, 816
HapII CCGG 2 cut(s) 64, 410
Hin1II CATG 3 cut(s) 214, 722, 737
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 7 cut(s) 214, 430, 446, 638, 769, 809, 823
HpaII CCGG 2 cut(s) 64, 410
HphI GGTGA 4 cut(s) 53, 119, 682, 918
Hpy166II GTNNAC 2 cut(s) 506, 764
Hpy188I TCNGA 4 cut(s) 119, 153, 192, 914
Hpy188III TCNNGA 3 cut(s) 450, 553, 719
Hpy8I GTNNAC 2 cut(s) 506, 764
HpyAV CCTTC 2 cut(s) 124, 351
HpyCH4III ACNGT 3 cut(s) 550, 593, 667
HpyCH4V TGCA 6 cut(s) 437, 506, 632, 662, 730, 830
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 103, 309
HpyF3I CTNAG 1 cut(s) 384
Hsp92II CATG 3 cut(s) 214, 722, 737
KpnI GGTACC 1 cut(s) 141
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 2 cut(s) 148, 888
LmnI GCTCC 6 cut(s) 94, 111, 167, 240, 263, 482
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 2 cut(s) 106, 839
MabI ACCWGGT 2 cut(s) 133, 508
MaeI CTAG 5 cut(s) 26, 180, 300, 309, 474
MalI GATC 2 cut(s) 150, 890
MboI GATC 2 cut(s) 148, 888
MboII GAAGA 3 cut(s) 92, 734, 915
MflI RGATCY 1 cut(s) 888
MhlI GDGCHC 2 cut(s) 508, 532
MluCI AATT 6 cut(s) 160, 571, 674, 725, 853, 915
MlyI GAGTC 3 cut(s) 439, 763, 818
MnlI CCTC 6 cut(s) 69, 113, 135, 730, 808, 868
MseI TTAA 3 cut(s) 524, 852, 937
MspI CCGG 2 cut(s) 64, 410
MspR9I CCNGG 2 cut(s) 135, 510
MvaI CCWGG 2 cut(s) 135, 510
MwoI GCNNNNNNNGC 3 cut(s) 94, 103, 309
NdeII GATC 2 cut(s) 148, 888
NlaIII CATG 3 cut(s) 214, 722, 737
NlaIV GGNNCC 5 cut(s) 139, 328, 349, 358, 796
PagI TCATGA 1 cut(s) 718
PceI AGGCCT 1 cut(s) 389
PfeI GAWTC 4 cut(s) 214, 446, 638, 823
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 1 cut(s) 490
PleI GAGTC 3 cut(s) 438, 763, 817
PpsI GAGTC 3 cut(s) 438, 763, 817
PpuMI RGGWCCY 1 cut(s) 122
Psp124BI GAGCTC 1 cut(s) 532
Psp5II RGGWCCY 1 cut(s) 122
Psp6I CCWGG 2 cut(s) 133, 508
PspGI CCWGG 2 cut(s) 133, 508
PspN4I GGNNCC 5 cut(s) 139, 328, 349, 358, 796
PspPI GGNCC 4 cut(s) 31, 122, 348, 815
PspPPI RGGWCCY 1 cut(s) 122
PsuI RGATCY 1 cut(s) 888
RsaI GTAC 3 cut(s) 139, 295, 400
RsaNI GTAC 3 cut(s) 138, 294, 399
SacI GAGCTC 1 cut(s) 532
SaqAI TTAA 3 cut(s) 524, 852, 937
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 2 cut(s) 148, 888
Sau96I GGNCC 4 cut(s) 31, 122, 348, 815
SchI GAGTC 3 cut(s) 439, 763, 818
ScrFI CCNGG 2 cut(s) 135, 510
SduI GDGCHC 2 cut(s) 508, 532
SexAI ACCWGGT 2 cut(s) 133, 508
SfaNI GCATC 2 cut(s) 106, 839
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 531
SmoI CTYRAG 1 cut(s) 531
Sse9I AATT 6 cut(s) 160, 571, 674, 725, 853, 915
SseBI AGGCCT 1 cut(s) 389
SspMI CTAG 5 cut(s) 26, 180, 300, 309, 474
SstI GAGCTC 1 cut(s) 532
StuI AGGCCT 1 cut(s) 389
StyD4I CCNGG 2 cut(s) 133, 508
TaaI ACNGT 3 cut(s) 550, 593, 667
TasI AATT 6 cut(s) 160, 571, 674, 725, 853, 915
TfiI GAWTC 4 cut(s) 214, 446, 638, 823
Tru1I TTAA 3 cut(s) 524, 852, 937
Tru9I TTAA 3 cut(s) 524, 852, 937
TscAI CASTG 2 cut(s) 672, 790
TseI GCWGC 1 cut(s) 488
TspDTI ATGAA 6 cut(s) 17, 44, 459, 735, 855, 909
TspRI CASTG 2 cut(s) 672, 790
Van91I CCANNNNNTGG 1 cut(s) 272
VneI GTGCAC 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 2 cut(s) 571, 915
XspI CTAG 5 cut(s) 26, 180, 300, 309, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.