Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001607

Physical Location & Seq

Genomic Coordinates Forward (+)

44579591 .. 44580121

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG311100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCTTTGAGAAGCAGTATAATGTTCCTTTTGGTGGCGATGACTCTTTGCGGTGCTTGTTCTGGTGCTGGTGCTGTTTACAAAGTCGGCGGCCCGGATGGTTGGATAGTAGGTGTTGATTATAACCAGTGGTCCTCATCAAAAGAGTTTCGCGTAGGCGATGATCTTTTCTTTTCTTACAATAAGCAATACCACAATGTGGTTCAAGTATCTGAGCAAGGTTTCAAATCCTGCAACTCCAGCTCTCCCATCGCAGCTTATAGTTCCGGTTCAGACACGATCACGCTTGAAAGGCCTGGCCACTGTTACTTTCTTTGTGGTGCTCCTGGTCATTGTGAAGACGGACAGAAGGTCGACGTTCAGGTCAGCCGTCCCATACCCGACAATCCAAGCCCGGCACCTTCTGGATTGTCTTCTCCTTCAACTCCTCATCCTGAAGAGAGGCCACCACACTCTGCGGCTCTGACCAATGCTCCAAAGCTTGCCTTGGCTGTCTTCGCTTCTGTGCTGGCATGGTGTTTTCTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

176

Amino Acids

18.73

Weight (kDa)

5.89

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	35 - 116	2.1e-29	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06070 FvH4_5g19880 FvH4_6g29420
malus_domestica	MD14G1053600.v1.1 MD14G1053700.v1.1 MD14G1053900.v1.1
prunus_persica	Prupe.4G207100_v2.0.a1 Prupe.4G207200_v2.0.a1 Prupe.4G207300_v2.0.a1 Prupe.4G207400_v2.0.a1 Prupe.4G207500_v2.0.a1 Prupe.7G081300_v2.0.a1 Prupe.7G081800_v2.0.a1 Prupe.7G082100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349461 RchiOBHm_Chr1g0368361 RchiOBHm_Chr7g0204671
rosa_laevigata	RLG00000003394 RLG00000003439 RLG00000027216 RLG00000028547
rosa_multiflora	Rmu_sc0001072.1_g000006 Rmu_sc0002495.1_g000010 Rmu_sc0002709.1_g000045 Rmu_sc0007104.1_g000009 Rmu_sc0009349.1_g000011
rosa_roxburghii	Rroxscaffold_3G00252880 Rroxscaffold_4G00288610 Rroxscaffold_4G00305530
rosa_rugosa	Rorug01G0203900 Rorug01G0341600 Rorug07G0085500 Rorug07G0088600
rosa_samantha	Rh1AG221300 Rh1AG348100 Rh1AG348600 Rh1BG187400 Rh1BG311100 Rh1CG206200 Rh1DG216700 Rh1DG342900 Rh7AG215400 Rh7BG212600 Rh7CG228500 Rh7DG223100
rosa_wichuraiana	Rw0G002410 Rw1G018810 Rw1G030990 Rw1G031020 Rw7G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	123
AasI	GACNNNNNNGTC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	397
AccB7I	CCANNNNNTGG	1 cut(s)	199
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	1 cut(s)	153
AciI	CCGC	3 cut(s)	51, 90, 458
AcoI	YGGCCR	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	456
AdeI	CACNNNGTG	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	34, 199
AgsI	TTSAA	4 cut(s)	206, 226, 290, 423
AhdI	GACNNNNNGTC	1 cut(s)	350
AjnI	CCWGG	2 cut(s)	295, 325
AluBI	AGCT	3 cut(s)	243, 257, 481
AluI	AGCT	3 cut(s)	243, 257, 481
Alw21I	GWGCWC	1 cut(s)	325
AoxI	GGCC	4 cut(s)	91, 293, 298, 443
ApeKI	GCWGC	1 cut(s)	254
AspS9I	GGNCC	2 cut(s)	92, 132
AsuC2I	CCSGG	2 cut(s)	95, 395
AvaII	GGWCC	1 cut(s)	132
BalI	TGGCCA	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	397
BbsI	GAAGAC	3 cut(s)	345, 405, 487
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	2 cut(s)	92, 257
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	2 cut(s)	297, 327
BcnI	CCSGG	2 cut(s)	95, 395
BisI	GCNGC	3 cut(s)	91, 255, 459
BlsI	GCNGC	3 cut(s)	92, 256, 460
Bme1390I	CCNGG	4 cut(s)	95, 297, 327, 395
Bme18I	GGWCC	1 cut(s)	132
BmeRI	GACNNNNNGTC	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	92, 132
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	4 cut(s)	95, 297, 327, 395
BpiI	GAAGAC	3 cut(s)	345, 405, 487
BpmI	CTGGAG	1 cut(s)	223
BpuMI	CCSGG	2 cut(s)	95, 395
BsaJI	CCNNGG	1 cut(s)	486
BsaWI	WCCGGW	1 cut(s)	266
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 199
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	297, 327
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	2 cut(s)	103, 430
BseLI	CCNNNNNNNGG	2 cut(s)	34, 199
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	417
BseXI	GCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	4 cut(s)	93, 295, 300, 445
BshNI	GGYRCC	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	3 cut(s)	95, 267, 395
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	34, 199
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	4 cut(s)	93, 295, 300, 445
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	163, 279
BspACI	CCGC	3 cut(s)	51, 90, 458
BspANI	GGCC	4 cut(s)	93, 295, 300, 445
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	399
BspT107I	GGYRCC	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	2 cut(s)	163, 279
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	297, 327
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	483, 510
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	103, 430
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	2 cut(s)	166, 282
BstMBI	GATC	2 cut(s)	163, 279
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 292, 497
BstNI	CCWGG	2 cut(s)	297, 327
BstSCI	CCNGG	4 cut(s)	93, 295, 325, 393
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	266
BstV2I	GAAGAC	3 cut(s)	345, 405, 487
BsuRI	GGCC	4 cut(s)	93, 295, 300, 445
BtgZI	GCGATG	3 cut(s)	53, 174, 235
BtsCI	GGATG	2 cut(s)	103, 430
BtsIMutI	CAGTG	2 cut(s)	134, 301
Cac8I	GCNNGC	2 cut(s)	483, 510
Cfr13I	GGNCC	2 cut(s)	92, 132
CviAII	CATG	1 cut(s)	513
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	165, 281
DpnII	GATC	2 cut(s)	163, 279
DraIII	CACNNNGTG	1 cut(s)	199
DrdI	GACNNNNNNGTC	1 cut(s)	362
DriI	GACNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	432
Eam1105I	GACNNNNNGTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	486
Eco147I	AGGCCT	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	456
EcoRII	CCWGG	2 cut(s)	295, 325
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	1 cut(s)	516
FaiI	YATR	5 cut(s)	20, 123, 261, 377, 514
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	1 cut(s)	512
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	91, 255, 459
FokI	GGATG	2 cut(s)	110, 417
Fsp4HI	GCNGC	3 cut(s)	91, 255, 459
GluI	GCNGC	3 cut(s)	91, 255, 459
GsuI	CTGGAG	1 cut(s)	223
HaeIII	GGCC	4 cut(s)	93, 295, 300, 445
HapII	CCGG	3 cut(s)	95, 267, 395
Hin1II	CATG	1 cut(s)	516
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	3 cut(s)	95, 267, 395
Hpy166II	GTNNAC	2 cut(s)	79, 355
Hpy188I	TCNGA	3 cut(s)	214, 274, 465
Hpy188III	TCNNGA	2 cut(s)	405, 434
Hpy8I	GTNNAC	2 cut(s)	79, 355
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	3 cut(s)	343, 411, 429
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 292, 497
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	1 cut(s)	516
Kzo9I	GATC	2 cut(s)	163, 279
LmnI	GCTCC	2 cut(s)	328, 478
Lsp1109I	GCAGC	1 cut(s)	266
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	165, 281
MboI	GATC	2 cut(s)	163, 279
MboII	GAAGA	4 cut(s)	350, 405, 449, 487
MhlI	GDGCHC	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	1 cut(s)	526
MluNI	TGGCCA	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	3 cut(s)	145, 435, 438
Mox20I	TGGCCA	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	300
MspI	CCGG	3 cut(s)	95, 267, 395
MspR9I	CCNGG	4 cut(s)	95, 297, 327, 395
MvaI	CCWGG	2 cut(s)	297, 327
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	3 cut(s)	240, 292, 497
NciI	CCSGG	2 cut(s)	95, 395
NdeII	GATC	2 cut(s)	163, 279
NlaIII	CATG	1 cut(s)	516
NlaIV	GGNNCC	1 cut(s)	399
PceI	AGGCCT	1 cut(s)	295
PflMI	CCANNNNNTGG	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	92, 256, 460
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PsiI	TTATAA	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	295, 325
PspGI	CCWGG	2 cut(s)	295, 325
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	2 cut(s)	92, 132
SalI	GTCGAC	1 cut(s)	353
SatI	GCNGC	3 cut(s)	91, 255, 459
Sau3AI	GATC	2 cut(s)	163, 279
Sau96I	GGNCC	2 cut(s)	92, 132
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	4 cut(s)	95, 297, 327, 395
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	9 cut(s)	115, 223, 245, 259, 354, 360, 366, 403, 483
SinI	GGWCC	1 cut(s)	132
Sse9I	AATT	1 cut(s)	526
SseBI	AGGCCT	1 cut(s)	295
SsiI	CCGC	3 cut(s)	51, 90, 458
StuI	AGGCCT	1 cut(s)	295
StyD4I	CCNGG	4 cut(s)	93, 295, 325, 393
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	354
TasI	AATT	1 cut(s)	526
TauI	GCSGC	2 cut(s)	93, 461
TscAI	CASTG	2 cut(s)	134, 308
TseI	GCWGC	1 cut(s)	254
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	134, 308
Van91I	CCANNNNNTGG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.