RchiOBHm_Chr1g0349461

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001607
Physical Location & Seq
Forward (+)
42570455 .. 42571072
618 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57543

Sequence Viewer

Length: 618 bp
ATGCGGAGGGTGGCTACAATATCATTCATTCACATTTTCAGTCCCATATCTGTATCTTTGATCTTTGTGATTTCCTGCACACCCCTTTGTCTTGTTCTCACCAACTCTCGTGTTTGTTTCGTAATGGCTTTGAGAAATACAATCCTGATTTTCTGTGTTGCAACGGCTTTTCTGAGCACTTGTTCTGGTGCAACTGCATCGGGGGCTGTATACAGAGCAGGGGTTGTTTACCATGTTGGTGACTCCAGTGGGTGGAGTATCTTTCCTGACTACAATAATTGGACTTCCACAAAAAACTTTCATGTGGGAGATACTTTACTTTTTACCTACGATAAGATGTTCCATAATTTGATGCAAGTCCATGGGAAAGATTACCAATCGTGCAACACTAAGTCGCCCATGGTCGTCTATGATACTGGATCTGATGCTATAAATCTTAAGAAACCTGGCGACTATTATTTCATCTGTGGTAGAAACTTCGAACCTGAGTGGTATGCTATGACTCTCAAGGAACCCGGCCACTGCCAAGCCGGGCAAAAACTTCACATCAAGGTCACTCTACCGATACCAAATCATCATATGGTTGCAAGTCCCATCCCAGCACCAGCACCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

205

Amino Acids

22.76

Weight (kDa)

8.77

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 87 - 158 6.6e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 252
AccI GTMKAC 1 cut(s) 210
AciI CCGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 427
AcoI YGGCCR 1 cut(s) 517
AfiI CCNNNNNNNGG 1 cut(s) 252
AflII CTTAAG 1 cut(s) 437
AjnI CCWGG 1 cut(s) 445
AleI CACNNNNGTG 1 cut(s) 613
Alw21I GWGCWC 1 cut(s) 179
AlwI GGATC 1 cut(s) 427
AoxI GGCC 1 cut(s) 517
AsuC2I CCSGG 2 cut(s) 516, 532
AsuHPI GGTGA 2 cut(s) 91, 251
AsuII TTCGAA 1 cut(s) 480
BauI CACGAG 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 179
BccI CCATC 1 cut(s) 602
BceAI ACGGC 1 cut(s) 180
BcgI CGANNNNNNTGC 2 cut(s) 180, 214
BciT130I CCWGG 1 cut(s) 447
BcnI CCSGG 2 cut(s) 516, 532
BfrI CTTAAG 1 cut(s) 437
Bme1390I CCNGG 3 cut(s) 447, 516, 532
BmiI GGNNCC 1 cut(s) 513
BmrFI CCNGG 3 cut(s) 447, 516, 532
BmsI GCATC 3 cut(s) 206, 342, 415
BpmI CTGGAG 1 cut(s) 229
Bpu14I TTCGAA 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 2 cut(s) 516, 532
BsaJI CCNNGG 2 cut(s) 361, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse1I ACTGG 2 cut(s) 246, 421
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 2 cut(s) 361, 399
BseGI GGATG 1 cut(s) 594
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 164, 477
BseNI ACTGG 2 cut(s) 246, 421
BseYI CCCAGC 1 cut(s) 598
BsgI GTGCAG 1 cut(s) 61
BshFI GGCC 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 516, 531
BslFI GGGAC 2 cut(s) 27, 576
BslI CCNNNNNNNGG 1 cut(s) 252
BsmFI GGGAC 2 cut(s) 27, 576
BsnI GGCC 1 cut(s) 519
Bsp119I TTCGAA 1 cut(s) 480
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 2 cut(s) 60, 419
Bsp19I CCATGG 2 cut(s) 361, 399
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 519
BspCNI CTCAG 2 cut(s) 165, 478
BspLI GGNNCC 1 cut(s) 513
BspPI GGATC 1 cut(s) 427
BspT104I TTCGAA 1 cut(s) 480
BspTI CTTAAG 1 cut(s) 437
BsrI ACTGG 2 cut(s) 246, 421
BssECI CCNNGG 2 cut(s) 361, 399
BssMI GATC 2 cut(s) 60, 419
BssNAI GTATAC 1 cut(s) 211
BssSI CACGAG 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 361, 399
Bst1107I GTATAC 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 447
BstAFI CTTAAG 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 480
BstDEI CTNAG 3 cut(s) 173, 390, 486
BstDSI CCRYGG 2 cut(s) 361, 399
BstF5I GGATG 1 cut(s) 594
BstKTI GATC 2 cut(s) 63, 422
BstMBI GATC 2 cut(s) 60, 419
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 3 cut(s) 445, 514, 530
BstX2I RGATCY 1 cut(s) 419
BstYI RGATCY 1 cut(s) 419
BstZ17I GTATAC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 519
BtgI CCRYGG 2 cut(s) 361, 399
BtsCI GGATG 1 cut(s) 594
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 2 cut(s) 253, 520
CviAII CATG 4 cut(s) 233, 302, 362, 400
CviJI RGCY 6 cut(s) 14, 128, 167, 206, 519, 530
CviKI_1 RGCY 6 cut(s) 14, 128, 167, 206, 519, 530
DdeI CTNAG 3 cut(s) 173, 390, 486
DpnI GATC 2 cut(s) 62, 421
DpnII GATC 2 cut(s) 60, 419
EaeI YGGCCR 1 cut(s) 517
Eco130I CCWWGG 2 cut(s) 361, 399
EcoRII CCWGG 1 cut(s) 445
EcoT14I CCWWGG 2 cut(s) 361, 399
ErhI CCWWGG 2 cut(s) 361, 399
FaeI CATG 4 cut(s) 236, 305, 365, 403
FaqI GGGAC 2 cut(s) 27, 576
FatI CATG 4 cut(s) 232, 301, 361, 399
FauNDI CATATG 1 cut(s) 579
FblI GTMKAC 1 cut(s) 210
FokI GGATG 1 cut(s) 581
GsaI CCCAGC 1 cut(s) 602
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 1 cut(s) 519
HapII CCGG 2 cut(s) 516, 531
Hin1II CATG 4 cut(s) 236, 305, 365, 403
HinfI GANTC 2 cut(s) 242, 502
HpaII CCGG 2 cut(s) 516, 531
HphI GGTGA 2 cut(s) 91, 251
Hpy166II GTNNAC 2 cut(s) 211, 229
Hpy188I TCNGA 2 cut(s) 174, 424
Hpy188III TCNNGA 2 cut(s) 145, 266
Hpy8I GTNNAC 2 cut(s) 211, 229
HpyCH4V TGCA 7 cut(s) 78, 161, 191, 197, 355, 384, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 3 cut(s) 173, 390, 486
Hsp92II CATG 4 cut(s) 236, 305, 365, 403
Kzo9I GATC 2 cut(s) 60, 419
LweI GCATC 3 cut(s) 206, 342, 415
MaeIII GTNAC 2 cut(s) 239, 553
MalI GATC 2 cut(s) 62, 421
MboI GATC 2 cut(s) 60, 419
MflI RGATCY 1 cut(s) 419
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 2 cut(s) 277, 346
MlyI GAGTC 2 cut(s) 236, 496
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 2 cut(s) 237, 613
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 2 cut(s) 516, 531
MspR9I CCNGG 3 cut(s) 447, 516, 532
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 1 cut(s) 203
NciI CCSGG 2 cut(s) 516, 532
NcoI CCATGG 2 cut(s) 361, 399
NdeI CATATG 1 cut(s) 579
NdeII GATC 2 cut(s) 60, 419
NlaIII CATG 4 cut(s) 236, 305, 365, 403
NlaIV GGNNCC 1 cut(s) 513
NmuCI GTSAC 2 cut(s) 239, 553
NspV TTCGAA 1 cut(s) 480
OliI CACNNNNGTG 1 cut(s) 613
PflMI CCANNNNNTGG 1 cut(s) 252
PleI GAGTC 2 cut(s) 236, 496
PpsI GAGTC 2 cut(s) 236, 496
Psp6I CCWGG 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 598
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 513
PsuI RGATCY 1 cut(s) 419
RseI CAYNNNNRTG 2 cut(s) 237, 613
SaqAI TTAA 1 cut(s) 438
Sau3AI GATC 2 cut(s) 60, 419
SchI GAGTC 2 cut(s) 236, 496
ScrFI CCNGG 3 cut(s) 447, 516, 532
SduI GDGCHC 1 cut(s) 179
SetI ASST 4 cut(s) 329, 448, 487, 555
SfaNI GCATC 3 cut(s) 206, 342, 415
SfuI TTCGAA 1 cut(s) 480
SmiMI CAYNNNNRTG 2 cut(s) 237, 613
SmlI CTYRAG 2 cut(s) 437, 506
SmoI CTYRAG 2 cut(s) 437, 506
Sse9I AATT 2 cut(s) 277, 346
SsiI CCGC 1 cut(s) 4
StyD4I CCNGG 3 cut(s) 445, 514, 530
StyI CCWWGG 2 cut(s) 361, 399
TaqI TCGA 1 cut(s) 480
TasI AATT 2 cut(s) 277, 346
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 2 cut(s) 253, 527
TseFI GTSAC 2 cut(s) 239, 553
Tsp45I GTSAC 2 cut(s) 239, 553
TspDTI ATGAA 3 cut(s) 16, 290, 451
TspRI CASTG 2 cut(s) 253, 527
Van91I CCANNNNNTGG 1 cut(s) 252
Vha464I CTTAAG 1 cut(s) 437
XmiI GTMKAC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.