Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001607

Physical Location & Seq

Genomic Coordinates Forward (+)

5421401 .. 5422027

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1053900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCAAGGTCGCGTCGAGTCTTTCACTCAAACAAATTTCAGTCAATCACTCTCGATTTGTCCTACCTTTTCTATTTCTTTAGCCATGGCTCTGCGAAATACTGCTGCACTAATTTTCTTCGTGATGATGGTGCTTTCTGGTGTTTGTTTAGGTGATGTTTATAGAGTTGGCGATTCTGATGGGTGGACATCTCGAGGTCTCGTTGATTACAACAAGTGGGCTTCAACAAAAGAGTTTCATGTCGGCGATACTCTTATATTCGCTTACAATAGTCAATACCACAACTTGATGCAAGTTACCAAGCAAGATTTTGAATCTTGCAATACTACCGCTGCGATCACAGTTTATACCTCTGGTTCCGATACCATCACCCTTAGAAGGCCCGACCACTATTACTTTCTTTGTGGTGCTCCAGGCCACTGTCAAGCGGGACAAAAGGTTGATATCAAGGTTACACTTCCTATACCGCAGAGTTCGCTGGCAAGTCCTAACCCGGCACCTCAGGAATCTTTGCCTTCAGATTCTCATCCAAACTCAAATCCAAGCAGTGCCCCGACTATTTATTTTTCGAAGCTTGGGTTGGCCGTTACCACTCTTGTGCTATGTCTTTTGAGTGTTGTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

209

Amino Acids

22.67

Weight (kDa)

6.16

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	62 - 145	2.3e-29	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06070 FvH4_5g19880 FvH4_6g29420
malus_domestica	MD14G1053600.v1.1 MD14G1053700.v1.1 MD14G1053900.v1.1
prunus_persica	Prupe.4G207100_v2.0.a1 Prupe.4G207200_v2.0.a1 Prupe.4G207300_v2.0.a1 Prupe.4G207400_v2.0.a1 Prupe.4G207500_v2.0.a1 Prupe.7G081300_v2.0.a1 Prupe.7G081800_v2.0.a1 Prupe.7G082100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349461 RchiOBHm_Chr1g0368361 RchiOBHm_Chr7g0204671
rosa_laevigata	RLG00000003394 RLG00000003439 RLG00000027216 RLG00000028547
rosa_multiflora	Rmu_sc0001072.1_g000006 Rmu_sc0002495.1_g000010 Rmu_sc0002709.1_g000045 Rmu_sc0007104.1_g000009 Rmu_sc0009349.1_g000011
rosa_roxburghii	Rroxscaffold_3G00252880 Rroxscaffold_4G00288610 Rroxscaffold_4G00305530
rosa_rugosa	Rorug01G0203900 Rorug01G0341600 Rorug07G0085500 Rorug07G0088600
rosa_samantha	Rh1AG221300 Rh1AG348100 Rh1AG348600 Rh1BG187400 Rh1BG311100 Rh1CG206200 Rh1DG216700 Rh1DG342900 Rh7AG215400 Rh7BG212600 Rh7CG228500 Rh7DG223100
rosa_wichuraiana	Rw0G002410 Rw1G018810 Rw1G030990 Rw1G031020 Rw7G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	496
AccII	CGCG	1 cut(s)	12
AciI	CCGC	3 cut(s)	330, 428, 467
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	501
AfiI	CCNNNNNNNGG	1 cut(s)	378
AgsI	TTSAA	2 cut(s)	225, 314
AjnI	CCWGG	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
AleI	CACNNNNGTG	1 cut(s)	596
AluBI	AGCT	1 cut(s)	574
AluI	AGCT	1 cut(s)	574
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	192
AoxI	GGCC	3 cut(s)	380, 415, 582
ApeKI	GCWGC	2 cut(s)	104, 332
ApoI	RAATTY	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	381
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	2 cut(s)	164, 361
AsuII	TTCGAA	1 cut(s)	569
AvaI	CYCGRG	1 cut(s)	192
AxyI	CCTNAGG	1 cut(s)	501
BaeGI	GKGCMC	1 cut(s)	553
BanI	GGYRCC	1 cut(s)	496
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	91, 319
BccI	CCATC	3 cut(s)	121, 173, 374
BceAI	ACGGC	1 cut(s)	569
BciT130I	CCWGG	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	494
BcoDI	GTCTC	1 cut(s)	203
BisI	GCNGC	2 cut(s)	105, 333
BlsI	GCNGC	2 cut(s)	106, 334
Bme1390I	CCNGG	2 cut(s)	414, 494
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	2 cut(s)	358, 498
BmrFI	CCNGG	2 cut(s)	414, 494
BmsI	GCATC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	494
BsaBI	GATNNNNATC	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse21I	CCTNAGG	1 cut(s)	501
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	526
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	515
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	91, 319
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	382, 417, 584
BshNI	GGYRCC	1 cut(s)	496
BsiHKAI	GWGCWC	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	494
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	3 cut(s)	382, 417, 584
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	569
Bsp1286I	GDGCHC	2 cut(s)	412, 553
Bsp143I	GATC	1 cut(s)	336
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	3 cut(s)	330, 428, 467
BspANI	GGCC	3 cut(s)	382, 417, 584
BspCNI	CTCAG	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	358, 498
BspT104I	TTCGAA	1 cut(s)	569
BspT107I	GGYRCC	1 cut(s)	496
BspTNI	GGTCTC	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	343, 422
BstBI	TTCGAA	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	2 cut(s)	374, 501
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	526
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	2 cut(s)	412, 492
BstSLI	GKGCMC	1 cut(s)	553
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	91, 319
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	382, 417, 584
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	526
BtsI	GCAGTG	1 cut(s)	553
BtsIMutI	CAGTG	2 cut(s)	418, 553
Cac8I	GCNNGC	1 cut(s)	480
Cfr13I	GGNCC	1 cut(s)	381
CviAII	CATG	2 cut(s)	85, 239
CviJI	RGCY	7 cut(s)	83, 89, 221, 382, 417, 574, 584
CviKI_1	RGCY	7 cut(s)	83, 89, 221, 382, 417, 574, 584
DdeI	CTNAG	2 cut(s)	374, 501
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	582
Eco130I	CCWWGG	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	445
Eco57I	CTGAAG	1 cut(s)	501
Eco81I	CCTNAGG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	412
EcoRV	GATATC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	88, 242
FaiI	YATR	7 cut(s)	86, 162, 240, 257, 348, 464, 604
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	2 cut(s)	84, 238
FauI	CCCGC	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	105, 333
FokI	GGATG	1 cut(s)	513
Fsp4HI	GCNGC	2 cut(s)	105, 333
GluI	GCNGC	2 cut(s)	105, 333
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	3 cut(s)	382, 417, 584
HapII	CCGG	1 cut(s)	494
Hin1II	CATG	2 cut(s)	88, 242
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	5 cut(s)	17, 173, 314, 506, 521
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	2 cut(s)	164, 361
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	3 cut(s)	178, 361, 520
Hpy188III	TCNNGA	4 cut(s)	52, 121, 192, 503
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	372, 525
HpyCH4III	ACNGT	2 cut(s)	343, 422
HpyCH4V	TGCA	4 cut(s)	4, 107, 292, 321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	2 cut(s)	374, 501
Hsp92II	CATG	2 cut(s)	88, 242
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	415
LpnPI	CCDG	7 cut(s)	123, 339, 399, 426, 464, 488, 507
Lsp1109I	GCAGC	2 cut(s)	91, 319
LweI	GCATC	1 cut(s)	279
MaeIII	GTNAC	3 cut(s)	295, 451, 586
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	1 cut(s)	109
MhlI	GDGCHC	2 cut(s)	412, 553
MluCI	AATT	2 cut(s)	34, 111
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	3 cut(s)	188, 361, 510
MslI	CAYNNNNRTG	1 cut(s)	596
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	2 cut(s)	414, 494
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	475
NciI	CCSGG	1 cut(s)	494
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	2 cut(s)	88, 242
NlaIV	GGNNCC	2 cut(s)	358, 498
NspV	TTCGAA	1 cut(s)	569
OliI	CACNNNNGTG	1 cut(s)	596
PaeR7I	CTCGAG	1 cut(s)	192
PfeI	GAWTC	4 cut(s)	173, 314, 506, 521
PkrI	GCNGC	2 cut(s)	106, 334
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	358, 498
PspPI	GGNCC	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	596
SatI	GCNGC	2 cut(s)	105, 333
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	381
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	414, 494
SduI	GDGCHC	2 cut(s)	412, 553
SetI	ASST	9 cut(s)	10, 68, 154, 199, 353, 441, 453, 502, 576
SfaNI	GCATC	1 cut(s)	279
Sfr274I	CTCGAG	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	569
SlaI	CTCGAG	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	2 cut(s)	34, 111
SsiI	CCGC	3 cut(s)	330, 428, 467
StyD4I	CCNGG	2 cut(s)	412, 492
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	343, 422
TaqI	TCGA	4 cut(s)	15, 53, 193, 569
TasI	AATT	2 cut(s)	34, 111
TfiI	GAWTC	4 cut(s)	173, 314, 506, 521
TscAI	CASTG	2 cut(s)	425, 553
TseI	GCWGC	2 cut(s)	104, 332
TspDTI	ATGAA	1 cut(s)	227
TspRI	CASTG	2 cut(s)	425, 553
XapI	RAATTY	1 cut(s)	34
XhoI	CTCGAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.