Rroxscaffold_4G00305530

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001607
Physical Location & Seq
Reverse (-)
26188732 .. 26189226
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00305530.1

Sequence Viewer

Length: 495 bp
ATGGCTTTGAGAAATACAATCCTGATTTTCTTTGTTGCAATGGCTTTTCTGAGCACTTGTTCTGGTGCAACTTCATCGGGGGCTGTATACAGAGCTGGGGTTGTTTACCATGTTGGTGACTCCAGTGGGTGGAGTATCTTTCCTGACTACAATAATTGGACTTCCACAAAAGACTTTCATGTGGGAGATACTTTACTTTTCACCTACGATAAGATGTTCCATAATTTGATGCAAGTCGATGGGAAAGATTACCAATCGTGCAACACTAAGTCGCCCATGGTCGTCTATGATACTGGATCTGATGCTATAAATCTTAAGAAACCTGGCGACTATTATTTCATCTGTGGTAGAAACTTCGAACCTGAGTGGTATGCTATGACTCTCAAGGAACCCGGCCACTGCCAAGCCGGGCAAAAACTTCACGTCAAGGTCGCTCTACCGATACCAAATCATCATATGGTTGCAAGTCCCATCCCAGCACCAGCACCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

164

Amino Acids

18.22

Weight (kDa)

7.04

Isoelectric Point (pI)

30.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 46 - 117 3e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 129
AccI GTMKAC 1 cut(s) 87
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 1 cut(s) 394
AfiI CCNNNNNNNGG 1 cut(s) 129
AflII CTTAAG 1 cut(s) 314
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 1 cut(s) 322
AleI CACNNNNGTG 1 cut(s) 490
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw21I GWGCWC 1 cut(s) 56
AlwI GGATC 1 cut(s) 304
AoxI GGCC 1 cut(s) 394
AsuC2I CCSGG 2 cut(s) 393, 409
AsuHPI GGTGA 2 cut(s) 128, 193
AsuII TTCGAA 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 56
BccI CCATC 2 cut(s) 233, 479
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BciT130I CCWGG 1 cut(s) 324
BcnI CCSGG 2 cut(s) 393, 409
BfrI CTTAAG 1 cut(s) 314
Bme1390I CCNGG 3 cut(s) 324, 393, 409
BmgBI CACGTC 1 cut(s) 424
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 3 cut(s) 324, 393, 409
BmsI GCATC 2 cut(s) 219, 292
BpmI CTGGAG 1 cut(s) 106
Bpu14I TTCGAA 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 2 cut(s) 393, 409
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 2 cut(s) 123, 298
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 41, 354
BseNI ACTGG 2 cut(s) 123, 298
BseYI CCCAGC 2 cut(s) 95, 475
BshFI GGCC 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 2 cut(s) 393, 408
BslFI GGGAC 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 453
BsnI GGCC 1 cut(s) 396
Bsp119I TTCGAA 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 296
Bsp19I CCATGG 1 cut(s) 276
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 2 cut(s) 42, 355
BspLI GGNNCC 1 cut(s) 390
BspPI GGATC 1 cut(s) 304
BspT104I TTCGAA 1 cut(s) 357
BspTI CTTAAG 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 2 cut(s) 123, 298
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 296
BssNAI GTATAC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 276
Bst1107I GTATAC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 324
BstAFI CTTAAG 1 cut(s) 314
BstBI TTCGAA 1 cut(s) 357
BstDEI CTNAG 3 cut(s) 50, 267, 363
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 471
BstKTI GATC 1 cut(s) 299
BstMBI GATC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 3 cut(s) 322, 391, 407
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BstZ17I GTATAC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 396
BtgI CCRYGG 1 cut(s) 276
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 1 cut(s) 471
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 2 cut(s) 130, 397
CviAII CATG 3 cut(s) 110, 179, 277
CviJI RGCY 6 cut(s) 5, 44, 83, 95, 396, 407
CviKI_1 RGCY 6 cut(s) 5, 44, 83, 95, 396, 407
DdeI CTNAG 3 cut(s) 50, 267, 363
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 3 cut(s) 113, 182, 280
FaqI GGGAC 1 cut(s) 453
FatI CATG 3 cut(s) 109, 178, 276
FauNDI CATATG 1 cut(s) 456
FblI GTMKAC 1 cut(s) 87
FokI GGATG 1 cut(s) 458
GsaI CCCAGC 2 cut(s) 99, 479
GsuI CTGGAG 1 cut(s) 106
HaeIII GGCC 1 cut(s) 396
HapII CCGG 2 cut(s) 393, 408
Hin1II CATG 3 cut(s) 113, 182, 280
HinfI GANTC 2 cut(s) 119, 379
HpaII CCGG 2 cut(s) 393, 408
HphI GGTGA 2 cut(s) 128, 193
Hpy166II GTNNAC 2 cut(s) 88, 106
Hpy188I TCNGA 2 cut(s) 51, 301
Hpy188III TCNNGA 2 cut(s) 22, 143
Hpy8I GTNNAC 2 cut(s) 88, 106
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 5 cut(s) 38, 68, 232, 261, 464
HpyF3I CTNAG 3 cut(s) 50, 267, 363
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 3 cut(s) 113, 182, 280
Kzo9I GATC 1 cut(s) 296
LweI GCATC 2 cut(s) 219, 292
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 298
MboI GATC 1 cut(s) 296
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 2 cut(s) 154, 223
MlyI GAGTC 2 cut(s) 113, 373
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 2 cut(s) 114, 490
MspCI CTTAAG 1 cut(s) 314
MspI CCGG 2 cut(s) 393, 408
MspR9I CCNGG 3 cut(s) 324, 393, 409
MvaI CCWGG 1 cut(s) 324
NciI CCSGG 2 cut(s) 393, 409
NcoI CCATGG 1 cut(s) 276
NdeI CATATG 1 cut(s) 456
NdeII GATC 1 cut(s) 296
NlaIII CATG 3 cut(s) 113, 182, 280
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 116
NspV TTCGAA 1 cut(s) 357
OliI CACNNNNGTG 1 cut(s) 490
PflMI CCANNNNNTGG 1 cut(s) 129
PleI GAGTC 2 cut(s) 113, 373
PpsI GAGTC 2 cut(s) 113, 373
Psp6I CCWGG 1 cut(s) 322
PspFI CCCAGC 2 cut(s) 95, 475
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 390
PsuI RGATCY 1 cut(s) 296
RseI CAYNNNNRTG 2 cut(s) 114, 490
SaqAI TTAA 1 cut(s) 315
Sau3AI GATC 1 cut(s) 296
SchI GAGTC 2 cut(s) 113, 373
ScrFI CCNGG 3 cut(s) 324, 393, 409
SduI GDGCHC 1 cut(s) 56
SetI ASST 6 cut(s) 97, 206, 325, 364, 426, 432
SfaNI GCATC 2 cut(s) 219, 292
SfuI TTCGAA 1 cut(s) 357
SmiMI CAYNNNNRTG 2 cut(s) 114, 490
SmlI CTYRAG 2 cut(s) 314, 383
SmoI CTYRAG 2 cut(s) 314, 383
Sse9I AATT 2 cut(s) 154, 223
StyD4I CCNGG 3 cut(s) 322, 391, 407
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 1 cut(s) 426
TaqI TCGA 2 cut(s) 237, 357
TasI AATT 2 cut(s) 154, 223
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 2 cut(s) 130, 404
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 63, 167, 328
TspRI CASTG 2 cut(s) 130, 404
Van91I CCANNNNNTGG 1 cut(s) 129
Vha464I CTTAAG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.