Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001607

Physical Location & Seq

Genomic Coordinates Reverse (-)

12913963 .. 12914618

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G207300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTTTGGGAAAAAGTAGACTGACTTTCTTGCTCATGCTGGCTTTCTGTGGCGTTTGTTTTGGTGCTGTGTATAGAGTTGGTGACTCCAACGGGTGGACTTCTAGAGGCCTTGTTGATTACAATGAATGGGCATCAACAAAAGACTTTCATGTCAACGACTCCCTCATTTTTACTTACAACAATCAATTCCACAACGTGATGCAAGTTACCAACCAAGATTTTGAATCTTGCAACCCTACCTCTCCAGTCGCAGTCTATACCTCAGGATCTGACACCATCACCCTTGAAGGACCTGGCAAGTTTTACTTTATGTGTGGTGCTCCTGGCCATTGTCAAGCCGGACAAAGGGTTGAGATCACGGCCACCCTACCTACACCAGATGACTCATTTGCAAGTCCAACCCCGACACCTTATGGATCATCACCTTCAGCCTCTCATCCTGAAGTGCTGTCGCCAAGCTCAGCTCTAAGCACTAGTCCTGCTCTTCATTTTTCGAAACTTGGGTTGGGTGTCAGTGTGTCACCATGTTTGTGTTATCTACTCTTTTGGGTTTTGTATTTTAAATATGTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

193

Amino Acids

20.81

Weight (kDa)

5.61

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06070 FvH4_5g19880 FvH4_6g29420
malus_domestica	MD14G1053600.v1.1 MD14G1053700.v1.1 MD14G1053900.v1.1
prunus_persica	Prupe.4G207100_v2.0.a1 Prupe.4G207200_v2.0.a1 Prupe.4G207300_v2.0.a1 Prupe.4G207400_v2.0.a1 Prupe.4G207500_v2.0.a1 Prupe.7G081300_v2.0.a1 Prupe.7G081800_v2.0.a1 Prupe.7G082100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349461 RchiOBHm_Chr1g0368361 RchiOBHm_Chr7g0204671
rosa_laevigata	RLG00000003394 RLG00000003439 RLG00000027216 RLG00000028547
rosa_multiflora	Rmu_sc0001072.1_g000006 Rmu_sc0002495.1_g000010 Rmu_sc0002709.1_g000045 Rmu_sc0007104.1_g000009 Rmu_sc0009349.1_g000011
rosa_roxburghii	Rroxscaffold_3G00252880 Rroxscaffold_4G00288610 Rroxscaffold_4G00305530
rosa_rugosa	Rorug01G0203900 Rorug01G0341600 Rorug07G0085500 Rorug07G0088600
rosa_samantha	Rh1AG221300 Rh1AG348100 Rh1AG348600 Rh1BG187400 Rh1BG311100 Rh1CG206200 Rh1DG216700 Rh1DG342900 Rh7AG215400 Rh7BG212600 Rh7CG228500 Rh7DG223100
rosa_wichuraiana	Rw0G002410 Rw1G018810 Rw1G030990 Rw1G031020 Rw7G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	19
AclWI	GGATC	2 cut(s)	277, 427
AcoI	YGGCCR	2 cut(s)	328, 363
AcuI	CTGAAG	2 cut(s)	414, 465
AdeI	CACNNNGTG	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	96, 348
AgsI	TTSAA	2 cut(s)	227, 290
AhlI	ACTAGT	1 cut(s)	476
AjnI	CCWGG	2 cut(s)	295, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	2 cut(s)	462, 467
AluI	AGCT	2 cut(s)	462, 467
Alw21I	GWGCWC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	277, 427
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	3 cut(s)	109, 328, 363
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	4 cut(s)	95, 274, 417, 516
AsuII	TTCGAA	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	293
AxyI	CCTNAGG	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	325
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	378
BciT130I	CCWGG	2 cut(s)	297, 327
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	2 cut(s)	105, 477
BlpI	GCTNAGC	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	297, 327
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmrFI	CCNGG	2 cut(s)	297, 327
BmsI	GCATC	2 cut(s)	143, 192
BpmI	CTGGAG	1 cut(s)	231
Bpu1102I	GCTNAGC	1 cut(s)	463
Bpu14I	TTCGAA	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 348
Bse1I	ACTGG	1 cut(s)	248
Bse21I	CCTNAGG	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	297, 327
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	2 cut(s)	96, 348
BseMII	CTCAG	2 cut(s)	279, 477
BseNI	ACTGG	1 cut(s)	248
BshFI	GGCC	3 cut(s)	111, 330, 365
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	96, 348
BsnI	GGCC	3 cut(s)	111, 330, 365
Bsp119I	TTCGAA	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	3 cut(s)	269, 357, 419
Bsp1720I	GCTNAGC	1 cut(s)	463
BspANI	GGCC	3 cut(s)	111, 330, 365
BspCNI	CTCAG	2 cut(s)	278, 476
BspPI	GGATC	2 cut(s)	277, 427
BspQI	GCTCTTC	1 cut(s)	492
BspT104I	TTCGAA	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	248
BssMI	GATC	3 cut(s)	269, 357, 419
Bst2UI	CCWGG	2 cut(s)	297, 327
Bst6I	CTCTTC	1 cut(s)	492
BstBI	TTCGAA	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	3 cut(s)	265, 463, 470
BstF5I	GGATG	1 cut(s)	439
BstKTI	GATC	3 cut(s)	272, 360, 422
BstMBI	GATC	3 cut(s)	269, 357, 419
BstNI	CCWGG	2 cut(s)	297, 327
BstSCI	CCNGG	2 cut(s)	295, 325
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
Bsu36I	CCTNAGG	1 cut(s)	265
BsuRI	GGCC	3 cut(s)	111, 330, 365
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	293
CviAII	CATG	3 cut(s)	37, 152, 528
CviJI	RGCY	9 cut(s)	5, 44, 111, 330, 341, 365, 434, 462, 467
CviKI_1	RGCY	9 cut(s)	5, 44, 111, 330, 341, 365, 434, 462, 467
DdeI	CTNAG	3 cut(s)	265, 463, 470
DpnI	GATC	3 cut(s)	271, 359, 421
DpnII	GATC	3 cut(s)	269, 357, 419
DraI	TTTAAA	1 cut(s)	565
DraIII	CACNNNGTG	1 cut(s)	199
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
EaeI	YGGCCR	2 cut(s)	328, 363
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco147I	AGGCCT	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	2 cut(s)	414, 465
Eco81I	CCTNAGG	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	295, 325
FaeI	CATG	3 cut(s)	40, 155, 531
FaiI	YATR	8 cut(s)	38, 75, 153, 261, 314, 417, 529, 570
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	3 cut(s)	36, 151, 527
FblI	GTMKAC	1 cut(s)	19
FokI	GGATG	1 cut(s)	426
FspBI	CTAG	2 cut(s)	105, 477
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	3 cut(s)	111, 330, 365
HapII	CCGG	1 cut(s)	342
Hin1II	CATG	3 cut(s)	40, 155, 531
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	4 cut(s)	86, 161, 227, 386
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	4 cut(s)	95, 274, 417, 516
Hpy166II	GTNNAC	3 cut(s)	20, 99, 157
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	3 cut(s)	105, 267, 443
Hpy8I	GTNNAC	3 cut(s)	20, 99, 157
HpyAV	CCTTC	2 cut(s)	284, 438
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	3 cut(s)	205, 234, 395
HpyF3I	CTNAG	3 cut(s)	265, 463, 470
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	40, 155, 531
Kzo9I	GATC	3 cut(s)	269, 357, 419
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	1 cut(s)	328
LweI	GCATC	2 cut(s)	143, 192
MaeI	CTAG	2 cut(s)	105, 477
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	3 cut(s)	83, 208, 522
MalI	GATC	3 cut(s)	271, 359, 421
MboI	GATC	3 cut(s)	269, 357, 419
MboII	GAAGA	1 cut(s)	479
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	330
MlyI	GAGTC	3 cut(s)	80, 155, 380
MmeI	TCCRAC	2 cut(s)	114, 425
MnlI	CCTC	5 cut(s)	101, 176, 253, 274, 445
Mox20I	TGGCCA	1 cut(s)	330
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	2 cut(s)	564, 577
MslI	CAYNNNNRTG	1 cut(s)	532
Msp20I	TGGCCA	1 cut(s)	330
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	2 cut(s)	297, 327
MvaI	CCWGG	2 cut(s)	297, 327
NdeII	GATC	3 cut(s)	269, 357, 419
NlaIII	CATG	3 cut(s)	40, 155, 531
NmuCI	GTSAC	2 cut(s)	83, 522
NspV	TTCGAA	1 cut(s)	497
PceI	AGGCCT	1 cut(s)	111
PciSI	GCTCTTC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	96
PleI	GAGTC	3 cut(s)	80, 155, 380
PpsI	GAGTC	3 cut(s)	80, 155, 380
PpuMI	RGGWCCY	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	295, 325
PspGI	CCWGG	2 cut(s)	295, 325
PspPI	GGNCC	1 cut(s)	293
PspPPI	RGGWCCY	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	532
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	2 cut(s)	564, 577
Sau3AI	GATC	3 cut(s)	269, 357, 419
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	3 cut(s)	80, 155, 380
ScrFI	CCNGG	2 cut(s)	297, 327
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	9 cut(s)	201, 245, 266, 298, 376, 415, 430, 464, 469
SfaNI	GCATC	2 cut(s)	143, 192
SfuI	TTCGAA	1 cut(s)	497
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	532
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	1 cut(s)	188
SseBI	AGGCCT	1 cut(s)	111
SspMI	CTAG	2 cut(s)	105, 477
StuI	AGGCCT	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	295, 325
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	497
TasI	AATT	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	564, 577
Tru9I	TTAA	2 cut(s)	564, 577
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	2 cut(s)	83, 522
Tsp45I	GTSAC	2 cut(s)	83, 522
TspDTI	ATGAA	3 cut(s)	140, 141, 479
TspRI	CASTG	1 cut(s)	523
Van91I	CCANNNNNTGG	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	293
XbaI	TCTAGA	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	19
XspI	CTAG	2 cut(s)	105, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.