Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Forward (+)

24982713 .. 24984754

Gene Structure 2042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22030.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGAGCTCATACCCACCTATTTCTTTATTTGATCTGATATCCCCACCTAATAGAAACGTCGACCCTTTCAAAAACGACGTCGACAAGGCTTTTAGTTCCTTTTTTTCCGCATTCAATGGGGTTGCTGCTGCTGGTGTTATTAGTTCCCTTATTTCTTCTGTGGTGCTGGTCATCGCTGCTACAGTCGTTATATATGCCATTATTAACTGCGTGAGAAAGTATGAAAATTATATTCCAATATCTGGCGAGGTGACGAGTAGAACGTCTGGAAATTATATTCCATTATCTTCCAGCGAAGTAGCATTTGGTTCCAAGGCCCAGTTTCCGACAGTCAAAGAGTTCCTAAGCGACATGGAAAGAGAGAAGCCTGTAGCTTACACAGCAAAGCAAATTGCAGAGTACACACAAAACTATAGCTACTCCAACATTTTAGGTTCAGGTGGATTTGGAGTAGTATATAAAGGGTTTCTCGAGAATGGAGTAACAGTAGCTGTCAAGGTCCTTACCAACAATAGGGGTAAGATGGTTGAAAAGCAGTTTATGGCAGAAGTTGGAACCTTGGGAAGAACTTACCATGTCAATTTGGTTAGACTCGTGGGCTTTTGCTTCGCCCCCGAAATGAAAGCCCTTGTCTACGAGTACATGGAGAATGGTTCTCTGGAAAAGTTATTGTTCAAGAACGATGGAGAAGTGGATCTAGAGAAGCTTCATGGTATTGCAGTCCAAACTGCAAAAGGGTTGGCTTATTTGCATGAGGAGTGTGAACGAAAAATCATTCACTATGATATTAAGCCCGAAAATGTGCTTCTTGATGAGAACTTGAATCCCAAGGTTGCGGATTTTGGACTCGCCAAGCTTTGTAATAGAGGAAGTAGTCAAGTAATCCTAACCAATTTCAGAGGGACAGCCGGATATGCAGCTCCAGAGTTGTGGAAGCCTTATCCTGTGACTCACAAATGTGATGTTTACAGTTTTGGTATTCTTCTCTTTGAGATTGTTGAAAGAAGGAGACATTACGACGATAATGTGAGCCATGAGTCCCGGGACTGGCTACCTAAATGGACATGGAACATGTTTGAGAAAAATGAGTTAGCAACACTATTACTGCGTTGTGGGATTGAAGAGAGTGACAGGGAAAAAGCAGAGAGGATGTTACTGATAGCTCTGTGGTGCATTCAGTATTCACCAGAAGCAAGACCCCTCATGAGCAATGTAGTGCAAATGTTGGAGGGGAATAAAGAAATTAGTCCACCTCCTTTCCCCTTTGAACATTTGCAATCTCCGCGACTAAATTCCGGTCAAAATAGTGGAACAGATGATGACACAAGTCTTTCTGCATCAGGCACACTTACTGATCCACGTTGTGATGCGCTTGAAATTGAGGTAGTTCTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

466

Amino Acids

52.02

Weight (kDa)

5.34

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 290	7.4e-49	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	24 - 292	3.6e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
AccB7I	CCANNNNNTGG	1 cut(s)	242
AccI	GTMKAC	3 cut(s)	60, 81, 633
AccII	CGCG	1 cut(s)	1285
AciI	CCGC	3 cut(s)	108, 836, 1283
AclWI	GGATC	2 cut(s)	702, 1349
AcsI	RAATTY	1 cut(s)	1291
AcyI	GRCGYC	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	1364
AfaI	GTAC	2 cut(s)	401, 641
AfiI	CCNNNNNNNGG	3 cut(s)	242, 513, 1047
AflIII	ACRYGT	1 cut(s)	1071
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AleI	CACNNNNGTG	1 cut(s)	957
AluBI	AGCT	8 cut(s)	6, 374, 417, 491, 706, 856, 920, 1163
AluI	AGCT	8 cut(s)	6, 374, 417, 491, 706, 856, 920, 1163
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	1003
AlwI	GGATC	2 cut(s)	702, 1349
AlwNI	CAGNNNCTG	1 cut(s)	491
Ama87I	CYCGRG	2 cut(s)	470, 1041
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	4 cut(s)	125, 128, 176, 917
ApoI	RAATTY	1 cut(s)	1291
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspLEI	GCGC	1 cut(s)	1372
AspS9I	GGNCC	2 cut(s)	316, 499
AsuC2I	CCSGG	2 cut(s)	1042, 1043
AsuHPI	GGTGA	2 cut(s)	262, 1176
AvaI	CYCGRG	2 cut(s)	470, 1041
AvaII	GGWCC	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	593
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	112, 115, 163, 929
BccI	CCATC	2 cut(s)	517, 677
BcnI	CCSGG	2 cut(s)	1042, 1043
BcoDI	GTCTC	1 cut(s)	1003
BfaI	CTAG	1 cut(s)	698
BfmI	CTRYAG	3 cut(s)	180, 369, 412
BisI	GCNGC	4 cut(s)	126, 129, 177, 918
BlsI	GCNGC	4 cut(s)	127, 130, 178, 919
Bme1390I	CCNGG	2 cut(s)	1042, 1043
Bme18I	GGWCC	1 cut(s)	499
BmeT110I	CYCGRG	2 cut(s)	470, 1041
BmgT120I	GGNCC	2 cut(s)	316, 499
BmiI	GGNNCC	2 cut(s)	310, 556
BmrFI	CCNGG	2 cut(s)	1042, 1043
BmrI	ACTGGG	1 cut(s)	313
BmsI	GCATC	2 cut(s)	1346, 1357
BmuI	ACTGGG	1 cut(s)	313
BoxI	GACNNNNGTC	1 cut(s)	1326
BpmI	CTGGAG	1 cut(s)	906
Bpu10I	CCTNAGC	1 cut(s)	344
BpuMI	CCSGG	2 cut(s)	1042, 1043
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	4 cut(s)	312, 558, 828, 1041
BsaWI	WCCGGW	1 cut(s)	1295
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 513, 1047
Bse1I	ACTGG	2 cut(s)	319, 1052
Bse3DI	GCAATG	1 cut(s)	1216
BseDI	CCNNGG	4 cut(s)	312, 558, 828, 1041
BseGI	GGATG	1 cut(s)	1155
BseLI	CCNNNNNNNGG	3 cut(s)	242, 513, 1047
BseMI	GCAATG	1 cut(s)	1216
BseNI	ACTGG	2 cut(s)	319, 1052
BseRI	GAGGAG	1 cut(s)	770
BseXI	GCAGC	4 cut(s)	112, 115, 163, 929
Bsh1236I	CGCG	1 cut(s)	1285
BshFI	GGCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	2 cut(s)	470, 1041
BsiSI	CCGG	3 cut(s)	909, 1042, 1296
BslFI	GGGAC	3 cut(s)	916, 1024, 1058
BslI	CCNNNNNNNGG	3 cut(s)	242, 513, 1047
BsmAI	GTCTC	1 cut(s)	1003
BsmFI	GGGAC	3 cut(s)	916, 1024, 1058
BsmI	GAATGC	2 cut(s)	110, 1173
BsnI	GGCC	1 cut(s)	317
BsoBI	CYCGRG	2 cut(s)	470, 1041
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	31, 694, 1354
BspACI	CCGC	3 cut(s)	108, 836, 1283
BspANI	GGCC	1 cut(s)	317
BspFNI	CGCG	1 cut(s)	1285
BspHI	TCATGA	1 cut(s)	1203
BspLI	GGNNCC	2 cut(s)	310, 556
BspPI	GGATC	2 cut(s)	702, 1349
BsrDI	GCAATG	1 cut(s)	1216
BsrI	ACTGG	2 cut(s)	319, 1052
BssECI	CCNNGG	4 cut(s)	312, 558, 828, 1041
BssMI	GATC	3 cut(s)	31, 694, 1354
BssNI	GRCGYC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	593
BssT1I	CCWWGG	3 cut(s)	312, 558, 828
Bst2BI	CACGAG	1 cut(s)	593
Bst4CI	ACNGT	4 cut(s)	184, 331, 487, 971
Bst6I	CTCTTC	1 cut(s)	1116
BstACI	GRCGYC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	1155
BstFNI	CGCG	1 cut(s)	1285
BstHHI	GCGC	1 cut(s)	1372
BstKTI	GATC	3 cut(s)	34, 697, 1357
BstMAI	GTCTC	1 cut(s)	1003
BstMBI	GATC	3 cut(s)	31, 694, 1354
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 914, 1282
BstNSI	RCATGY	1 cut(s)	1075
BstPAI	GACNNNNGTC	1 cut(s)	1326
BstSCI	CCNGG	2 cut(s)	1040, 1041
BstSFI	CTRYAG	3 cut(s)	180, 369, 412
BstUI	CGCG	1 cut(s)	1285
BstV1I	GCAGC	4 cut(s)	112, 115, 163, 929
BstX2I	RGATCY	1 cut(s)	694
BstXI	CCANNNNNNTGG	1 cut(s)	930
BstYI	RGATCY	1 cut(s)	694
BsuRI	GGCC	1 cut(s)	317
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	1155
CaiI	CAGNNNCTG	1 cut(s)	491
CciI	TCATGA	1 cut(s)	1203
CfoI	GCGC	1 cut(s)	1372
Cfr13I	GGNCC	2 cut(s)	316, 499
Cfr9I	CCCGGG	1 cut(s)	1041
Csp6I	GTAC	2 cut(s)	400, 640
CviAII	CATG	9 cut(s)	352, 575, 643, 710, 752, 1034, 1065, 1072, 1204
CviQI	GTAC	2 cut(s)	400, 640
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	3 cut(s)	33, 696, 1356
DpnII	GATC	3 cut(s)	31, 694, 1354
DraIII	CACNNNGTG	1 cut(s)	1364
Eam1104I	CTCTTC	1 cut(s)	1116
EarI	CTCTTC	1 cut(s)	1116
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	3 cut(s)	312, 558, 828
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	499
Eco53kI	GAGCTC	1 cut(s)	6
Eco88I	CYCGRG	2 cut(s)	470, 1041
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRV	GATATC	1 cut(s)	39
EcoT14I	CCWWGG	3 cut(s)	312, 558, 828
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	3 cut(s)	312, 558, 828
FaeI	CATG	9 cut(s)	355, 578, 646, 713, 755, 1037, 1068, 1075, 1207
FaqI	GGGAC	3 cut(s)	916, 1024, 1058
FatI	CATG	9 cut(s)	351, 574, 642, 709, 751, 1033, 1064, 1071, 1203
FblI	GTMKAC	3 cut(s)	60, 81, 633
Fnu4HI	GCNGC	4 cut(s)	126, 129, 177, 918
FokI	GGATG	1 cut(s)	1162
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	126, 129, 177, 918
FspBI	CTAG	1 cut(s)	698
GlaI	GCGC	1 cut(s)	1371
GluI	GCNGC	4 cut(s)	126, 129, 177, 918
GsuI	CTGGAG	1 cut(s)	906
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	3 cut(s)	909, 1042, 1296
HhaI	GCGC	1 cut(s)	1372
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	9 cut(s)	355, 578, 646, 713, 755, 1037, 1068, 1075, 1207
Hin6I	GCGC	1 cut(s)	1370
HinP1I	GCGC	1 cut(s)	1370
HincII	GTYRAC	2 cut(s)	61, 82
HindII	GTYRAC	2 cut(s)	61, 82
HindIII	AAGCTT	2 cut(s)	704, 854
HinfI	GANTC	5 cut(s)	591, 823, 846, 949, 1037
HpaII	CCGG	3 cut(s)	909, 1042, 1296
HphI	GGTGA	2 cut(s)	262, 1176
Hpy166II	GTNNAC	7 cut(s)	61, 82, 402, 634, 764, 967, 1250
Hpy188I	TCNGA	3 cut(s)	36, 327, 899
Hpy8I	GTNNAC	7 cut(s)	61, 82, 402, 634, 764, 967, 1250
Hpy99I	CGWCG	4 cut(s)	62, 80, 83, 1022
HpyAV	CCTTC	1 cut(s)	999
HpyCH4III	ACNGT	4 cut(s)	184, 331, 487, 971
HpyCH4IV	ACGT	4 cut(s)	57, 78, 263, 1360
HpyCH4V	TGCA	9 cut(s)	395, 719, 731, 751, 917, 1173, 1219, 1276, 1337
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 914, 1282
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	4 cut(s)	57, 78, 263, 1360
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	9 cut(s)	355, 578, 646, 713, 755, 1037, 1068, 1075, 1207
HspAI	GCGC	1 cut(s)	1370
Kzo9I	GATC	3 cut(s)	31, 694, 1354
LmnI	GCTCC	1 cut(s)	925
Lsp1109I	GCAGC	4 cut(s)	112, 115, 163, 929
LweI	GCATC	2 cut(s)	1346, 1357
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	4 cut(s)	57, 78, 263, 1360
MaeIII	GTNAC	5 cut(s)	250, 481, 946, 1127, 1152
MalI	GATC	3 cut(s)	33, 696, 1356
MboI	GATC	3 cut(s)	31, 694, 1354
MboII	GAAGA	5 cut(s)	147, 279, 576, 974, 1133
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	8 cut(s)	226, 271, 390, 580, 892, 1242, 1291, 1377
MlyI	GAGTC	4 cut(s)	585, 840, 943, 1046
MmeI	TCCRAC	4 cut(s)	350, 447, 532, 1206
MnlI	CCTC	9 cut(s)	241, 748, 860, 893, 1140, 1211, 1222, 1263, 1375
MseI	TTAA	2 cut(s)	204, 789
MslI	CAYNNNNRTG	1 cut(s)	957
MspI	CCGG	3 cut(s)	909, 1042, 1296
MspR9I	CCNGG	2 cut(s)	1042, 1043
Mva1269I	GAATGC	2 cut(s)	110, 1173
MvnI	CGCG	1 cut(s)	1285
MwoI	GCNNNNNNNGC	3 cut(s)	380, 914, 1282
NciI	CCSGG	2 cut(s)	1042, 1043
NdeII	GATC	3 cut(s)	31, 694, 1354
NlaIII	CATG	9 cut(s)	355, 578, 646, 713, 755, 1037, 1068, 1075, 1207
NlaIV	GGNNCC	2 cut(s)	310, 556
NmuCI	GTSAC	3 cut(s)	250, 946, 1127
NspI	RCATGY	1 cut(s)	1075
OliI	CACNNNNGTG	1 cut(s)	957
PaeR7I	CTCGAG	1 cut(s)	470
PagI	TCATGA	1 cut(s)	1203
PciI	ACATGT	1 cut(s)	1071
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PctI	GAATGC	2 cut(s)	110, 1173
PfeI	GAWTC	1 cut(s)	823
PflMI	CCANNNNNTGG	1 cut(s)	242
PkrI	GCNGC	4 cut(s)	127, 130, 178, 919
PleI	GAGTC	4 cut(s)	585, 840, 943, 1045
PpsI	GAGTC	4 cut(s)	585, 840, 943, 1045
PpuMI	RGGWCCY	1 cut(s)	499
PscI	ACATGT	1 cut(s)	1071
PshAI	GACNNNNGTC	1 cut(s)	1326
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	310, 556
PspPI	GGNCC	2 cut(s)	316, 499
PspPPI	RGGWCCY	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	694
RsaI	GTAC	2 cut(s)	401, 641
RsaNI	GTAC	2 cut(s)	400, 640
RseI	CAYNNNNRTG	1 cut(s)	957
SacI	GAGCTC	1 cut(s)	8
SalI	GTCGAC	2 cut(s)	59, 80
SaqAI	TTAA	2 cut(s)	204, 789
SatI	GCNGC	4 cut(s)	126, 129, 177, 918
Sau3AI	GATC	3 cut(s)	31, 694, 1354
Sau96I	GGNCC	2 cut(s)	316, 499
SchI	GAGTC	4 cut(s)	585, 840, 943, 1046
ScrFI	CCNGG	2 cut(s)	1042, 1043
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	1346, 1357
SfcI	CTRYAG	3 cut(s)	180, 369, 412
Sfr274I	CTCGAG	1 cut(s)	470
SinI	GGWCC	1 cut(s)	499
SlaI	CTCGAG	1 cut(s)	470
SmaI	CCCGGG	1 cut(s)	1043
SmiMI	CAYNNNNRTG	1 cut(s)	957
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	8 cut(s)	226, 271, 390, 580, 892, 1242, 1291, 1377
SsiI	CCGC	3 cut(s)	108, 836, 1283
SspMI	CTAG	1 cut(s)	698
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	1040, 1041
StyI	CCWWGG	3 cut(s)	312, 558, 828
TaaI	ACNGT	4 cut(s)	184, 331, 487, 971
TaiI	ACGT	4 cut(s)	60, 81, 266, 1363
TaqI	TCGA	3 cut(s)	60, 81, 471
TasI	AATT	8 cut(s)	226, 271, 390, 580, 892, 1242, 1291, 1377
TatI	WGTACW	2 cut(s)	399, 639
TfiI	GAWTC	1 cut(s)	823
Tru1I	TTAA	2 cut(s)	204, 789
Tru9I	TTAA	2 cut(s)	204, 789
TseFI	GTSAC	3 cut(s)	250, 946, 1127
TseI	GCWGC	4 cut(s)	125, 128, 176, 917
Tsp45I	GTSAC	3 cut(s)	250, 946, 1127
TspDTI	ATGAA	3 cut(s)	237, 635, 698
TspMI	CCCGGG	1 cut(s)	1041
Van91I	CCANNNNNTGG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	1 cut(s)	1291
XbaI	TCTAGA	1 cut(s)	697
XceI	RCATGY	1 cut(s)	1075
XhoI	CTCGAG	1 cut(s)	470
XmaI	CCCGGG	1 cut(s)	1041
XmiI	GTMKAC	3 cut(s)	60, 81, 633
XspI	CTAG	1 cut(s)	698
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.