Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Forward (+)

1040843 .. 1042788

Gene Structure 1946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGTCTGGTGCATTTGAGGTGGATAAGGATGGCAATTTGGTATTCCATCAAAATCAAAATAGTGAACCTGATGACTTCCAACAATTTCAGAAACAGTTCAATTCTTCAATGCAATGGGGAGTGGCCTTATCTGTTGTTTCTGGTTTGGTGGTGACCATTGCAATTGTAGCCATCGTATATGCCATCATTGATTGCTTGAAAAAGACCGGAAGCGCTATTCCGGCATATGCCCGGATAGCCAACGGTTACAGTAGTATCGACAAGTCTTTGAATATAAATCATTCATCCGACGATGTAGCCATCGACTTAACACCCGAATTGCAACAAGTTCGAAGCTCACGAGTTGAGTTTCCGACGGTAAAGGGGTTTCTTAGCAACATGGCAAGGGAGAAGCCGGTAGCCTTTTCACCCAAGCAACTTGCAGAATACACAGATAACTACTCCACCATATTGGGTTCAGGTGGCTTTGGAGTTGTCTTCAAAGGGATTCTCCCACATGGAGTGCAAGTCGCTGTCAAGGTGCTTACAAACACTAGGGATAAGATAGTTGAAGATCAATTCATGGCGGAAGTTGGCACCTTGGGAAGAACTTACCACATGAATTTGGTAAAACTATACGGCTTCTGCTTTGACCATGAAATGCGAGCACTTGTCTATGAGTACATGGAGAATCGATCACTTGACAAGTTCTTGTTTAGTGAGCATAGAGAAATAGATTTGGAGAAGCTGCACAATATCGCAGTCCAAACAGCAAAAGGGTTGGCTTACCTGCATGAGGAGTGCGAGCAAAGAATCATTCACTATGATATTAAGCCTGGGAATGTGCTTCTCGATAAGAATTTGACTCCAAAGGTTGCGGATTTTGGACTTGCCAAGCTTTGCAACAGAGGAAGTAGTCAAATGTTGTTAACTAAGGGAAGAGGGACACCGGGATATGCAGCGCCAGAGATGTGGAAGCCTTTTCCAGTGACTCAAAAGTGCGATGTTTACAGTTTTGGTATGCTTCTCTTTGAGATTGTTGGAAGGACGAGAAATTTTGATGAGGATGTAAGTGAGTCACGCGAATGGCTCCCAAGGTGGATCTGGAACATATTTGACAACAATAAATTAGAAGAGGCGCTGTCCTTTTGTGGGATTGAAGAACAAGACAGAGAAAAAGCAGAGAGGATTATTATGGTAGCTCTGCTGTGCATTCAGCATTCACCGGAAGCTAGACCTCTCATGAGCAATGTAGTGCAGATGTTGGAGGGAGATAAGGAAATTGCTTCACCGCCTTCTCCTTTCCAGCATTTGGAGTCACCGCAAGGAAATTTAACACAAGATAGTGGAACAGATGAAGACTTGAGTTCTTCTGCATCAGGCACAAAGACTTATGAACAATCCGAGCGCCATTCTAATACTGCTGTGCATAACAAATGTGAAATTGAGCTAGCTACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

481

Amino Acids

53.85

Weight (kDa)

5.29

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	149 - 415	5e-48	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	149 - 412	3.3e-46	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	777
AccB1I	GGYRCC	1 cut(s)	575
AccB7I	CCANNNNNTGG	1 cut(s)	1291
AccII	CGCG	1 cut(s)	1062
AciI	CCGC	4 cut(s)	566, 857, 1271, 1301
AclWI	GGATC	1 cut(s)	1088
AcsI	RAATTY	4 cut(s)	601, 838, 1033, 1309
AfaI	GTAC	1 cut(s)	662
AfeI	AGCGCT	1 cut(s)	214
AfiI	CCNNNNNNNGG	3 cut(s)	775, 1131, 1291
AgsI	TTSAA	7 cut(s)	100, 108, 199, 271, 481, 551, 1139
AjnI	CCWGG	1 cut(s)	814
AluBI	AGCT	7 cut(s)	336, 727, 877, 1181, 1211, 1429, 1433
AluI	AGCT	7 cut(s)	336, 727, 877, 1181, 1211, 1429, 1433
Alw21I	GWGCWC	1 cut(s)	649
AlwI	GGATC	1 cut(s)	1088
Aor51HI	AGCGCT	1 cut(s)	214
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	727, 938
ApoI	RAATTY	4 cut(s)	601, 838, 1033, 1309
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	4 cut(s)	215, 943, 1120, 1389
AsuC2I	CCSGG	2 cut(s)	232, 930
AsuHPI	GGTGA	5 cut(s)	163, 399, 1194, 1260, 1290
AsuII	TTCGAA	1 cut(s)	331
AsuNHI	GCTAGC	1 cut(s)	1429
BaeI	ACNNNNGTAYC	2 cut(s)	238, 271
BanI	GGYRCC	1 cut(s)	575
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	2 cut(s)	469, 1344
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	2 cut(s)	714, 950
BccI	CCATC	5 cut(s)	23, 54, 179, 191, 308
BceAI	ACGGC	1 cut(s)	634
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	1 cut(s)	816
BcnI	CCSGG	2 cut(s)	232, 930
BfaI	CTAG	3 cut(s)	534, 1212, 1430
BfoI	RGCGCY	4 cut(s)	216, 944, 1121, 1390
BfuAI	ACCTGC	1 cut(s)	777
BisI	GCNGC	2 cut(s)	728, 939
BlsI	GCNGC	2 cut(s)	729, 940
Bme1390I	CCNGG	3 cut(s)	232, 816, 930
BmiI	GGNNCC	2 cut(s)	577, 1070
BmrFI	CCNGG	3 cut(s)	232, 816, 930
BmsI	GCATC	1 cut(s)	1364
BmtI	GCTAGC	1 cut(s)	1433
BpiI	GAAGAC	2 cut(s)	469, 1344
Bpu14I	TTCGAA	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	1363
BpuMI	CCSGG	2 cut(s)	232, 930
Bsa29I	ATCGAT	1 cut(s)	673
BsaJI	CCNNGG	3 cut(s)	579, 815, 1073
BsaWI	WCCGGW	2 cut(s)	206, 1204
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	775, 1131, 1291
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	965
Bse3DI	GCAATG	3 cut(s)	119, 156, 1234
BseBI	CCWGG	1 cut(s)	816
BseCI	ATCGAT	1 cut(s)	673
BseDI	CCNNGG	3 cut(s)	579, 815, 1073
BseGI	GGATG	3 cut(s)	34, 284, 1051
BseLI	CCNNNNNNNGG	3 cut(s)	775, 1131, 1291
BseMI	GCAATG	3 cut(s)	119, 156, 1234
BseNI	ACTGG	1 cut(s)	965
BseRI	GAGGAG	1 cut(s)	791
BseXI	GCAGC	2 cut(s)	714, 950
BsgI	GTGCAG	2 cut(s)	713, 1256
Bsh1236I	CGCG	1 cut(s)	1062
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	575
BshVI	ATCGAT	1 cut(s)	673
BsiHKAI	GWGCWC	1 cut(s)	649
BsiSI	CCGG	6 cut(s)	207, 221, 232, 395, 929, 1205
BslFI	GGGAC	1 cut(s)	937
BslI	CCNNNNNNNGG	3 cut(s)	775, 1131, 1291
BsmFI	GGGAC	1 cut(s)	937
BsmI	GAATGC	2 cut(s)	1191, 1198
BsnI	GGCC	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	649
Bsp143I	GATC	3 cut(s)	553, 674, 1080
BspACI	CCGC	4 cut(s)	566, 857, 1271, 1301
BspANI	GGCC	1 cut(s)	125
BspDI	ATCGAT	1 cut(s)	673
BspFNI	CGCG	1 cut(s)	1062
BspHI	TCATGA	1 cut(s)	1221
BspLI	GGNNCC	2 cut(s)	577, 1070
BspMI	ACCTGC	1 cut(s)	777
BspOI	GCTAGC	1 cut(s)	1433
BspPI	GGATC	1 cut(s)	1088
BspT104I	TTCGAA	1 cut(s)	331
BspT107I	GGYRCC	1 cut(s)	575
BsrDI	GCAATG	3 cut(s)	119, 156, 1234
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	965
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	3 cut(s)	579, 815, 1073
BssMI	GATC	3 cut(s)	553, 674, 1080
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	2 cut(s)	579, 1073
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	816
Bst4CI	ACNGT	6 cut(s)	96, 245, 251, 358, 992, 1438
Bst6I	CTCTTC	2 cut(s)	913, 1107
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	3 cut(s)	645, 785, 1431
BstDEI	CTNAG	2 cut(s)	371, 912
BstEII	GGTNACC	1 cut(s)	151
BstENI	CCTNNNNNAGG	1 cut(s)	773
BstF5I	GGATG	3 cut(s)	34, 284, 1051
BstFNI	CGCG	1 cut(s)	1062
BstH2I	RGCGCY	4 cut(s)	216, 944, 1121, 1390
BstHHI	GCGC	4 cut(s)	215, 943, 1120, 1389
BstKTI	GATC	3 cut(s)	556, 677, 1083
BstMBI	GATC	3 cut(s)	553, 674, 1080
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 221, 236
BstNI	CCWGG	1 cut(s)	816
BstPI	GGTNACC	1 cut(s)	151
BstSCI	CCNGG	3 cut(s)	230, 814, 928
BstUI	CGCG	1 cut(s)	1062
BstV1I	GCAGC	2 cut(s)	714, 950
BstV2I	GAAGAC	2 cut(s)	469, 1344
BstX2I	RGATCY	1 cut(s)	1080
BstXI	CCANNNNNNTGG	2 cut(s)	451, 951
BstYI	RGATCY	1 cut(s)	1080
Bsu15I	ATCGAT	1 cut(s)	673
BsuRI	GGCC	1 cut(s)	125
BsuTUI	ATCGAT	1 cut(s)	673
BtgZI	GCGATG	1 cut(s)	996
BtsCI	GGATG	3 cut(s)	34, 284, 1051
BtsIMutI	CAGTG	1 cut(s)	972
BveI	ACCTGC	1 cut(s)	777
Cac8I	GCNNGC	3 cut(s)	645, 785, 1431
CciI	TCATGA	1 cut(s)	1221
CfoI	GCGC	4 cut(s)	215, 943, 1120, 1389
Cfr10I	RCCGGY	1 cut(s)	394
ClaI	ATCGAT	1 cut(s)	673
Csp6I	GTAC	1 cut(s)	661
CviAII	CATG	8 cut(s)	379, 497, 562, 598, 635, 664, 773, 1222
CviQI	GTAC	1 cut(s)	661
DdeI	CTNAG	2 cut(s)	371, 912
DpnI	GATC	3 cut(s)	555, 676, 1082
DpnII	GATC	3 cut(s)	553, 674, 1080
Eam1104I	CTCTTC	2 cut(s)	913, 1107
EarI	CTCTTC	2 cut(s)	913, 1107
EciI	GGCGGA	1 cut(s)	581
Eco130I	CCWWGG	2 cut(s)	579, 1073
Eco47III	AGCGCT	1 cut(s)	214
Eco91I	GGTNACC	1 cut(s)	151
EcoNI	CCTNNNNNAGG	1 cut(s)	773
EcoO65I	GGTNACC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	814
EcoT14I	CCWWGG	2 cut(s)	579, 1073
ErhI	CCWWGG	2 cut(s)	579, 1073
FaeI	CATG	8 cut(s)	382, 500, 565, 601, 638, 667, 776, 1225
FaqI	GGGAC	1 cut(s)	937
FatI	CATG	8 cut(s)	378, 496, 561, 597, 634, 663, 772, 1221
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	728, 939
FokI	GGATG	3 cut(s)	41, 271, 1058
Fsp4HI	GCNGC	2 cut(s)	728, 939
FspBI	CTAG	3 cut(s)	534, 1212, 1430
GlaI	GCGC	4 cut(s)	214, 942, 1119, 1388
GluI	GCNGC	2 cut(s)	728, 939
HaeII	RGCGCY	4 cut(s)	216, 944, 1121, 1390
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	6 cut(s)	207, 221, 232, 395, 929, 1205
HhaI	GCGC	4 cut(s)	215, 943, 1120, 1389
Hin1II	CATG	8 cut(s)	382, 500, 565, 601, 638, 667, 776, 1225
Hin6I	GCGC	4 cut(s)	213, 941, 1118, 1387
HinP1I	GCGC	4 cut(s)	213, 941, 1118, 1387
HincII	GTYRAC	1 cut(s)	909
HindII	GTYRAC	1 cut(s)	909
HindIII	AAGCTT	1 cut(s)	875
HinfI	GANTC	7 cut(s)	487, 670, 792, 844, 970, 1055, 1295
HpaI	GTTAAC	1 cut(s)	909
HpaII	CCGG	6 cut(s)	207, 221, 232, 395, 929, 1205
HphI	GGTGA	5 cut(s)	163, 399, 1194, 1260, 1290
Hpy166II	GTNNAC	3 cut(s)	65, 909, 988
Hpy188I	TCNGA	4 cut(s)	90, 289, 354, 1384
Hpy188III	TCNNGA	4 cut(s)	339, 830, 1084, 1222
Hpy8I	GTNNAC	3 cut(s)	65, 909, 988
Hpy99I	CGWCG	2 cut(s)	293, 358
HpyAV	CCTTC	2 cut(s)	1017, 1284
HpyCH4III	ACNGT	6 cut(s)	96, 245, 251, 358, 992, 1438
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 221, 236
HpyF3I	CTNAG	2 cut(s)	371, 912
Hsp92II	CATG	8 cut(s)	382, 500, 565, 601, 638, 667, 776, 1225
HspAI	GCGC	4 cut(s)	213, 941, 1118, 1387
KspAI	GTTAAC	1 cut(s)	909
Kzo9I	GATC	3 cut(s)	553, 674, 1080
LmnI	GCTCC	1 cut(s)	1074
Lsp1109I	GCAGC	2 cut(s)	714, 950
LweI	GCATC	1 cut(s)	1364
MaeI	CTAG	3 cut(s)	534, 1212, 1430
MaeIII	GTNAC	5 cut(s)	151, 245, 967, 1056, 1296
MalI	GATC	3 cut(s)	555, 676, 1082
MboI	GATC	3 cut(s)	553, 674, 1080
MboII	GAAGA	9 cut(s)	96, 469, 563, 597, 930, 1124, 1151, 1341, 1349
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	1 cut(s)	1080
MhlI	GDGCHC	1 cut(s)	649
MlyI	GAGTC	4 cut(s)	838, 964, 1064, 1304
MmeI	TCCRAC	5 cut(s)	103, 312, 377, 1000, 1224
MnlI	CCTC	9 cut(s)	10, 769, 881, 914, 1036, 1108, 1158, 1227, 1240
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	5 cut(s)	308, 810, 908, 1313, 1441
MslI	CAYNNNNRTG	1 cut(s)	1063
MspI	CCGG	6 cut(s)	207, 221, 232, 395, 929, 1205
MspR9I	CCNGG	3 cut(s)	232, 816, 930
MunI	CAATTG	1 cut(s)	162
Mva1269I	GAATGC	2 cut(s)	1191, 1198
MvaI	CCWGG	1 cut(s)	816
MvnI	CGCG	1 cut(s)	1062
MwoI	GCNNNNNNNGC	3 cut(s)	167, 221, 236
NciI	CCSGG	2 cut(s)	232, 930
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	3 cut(s)	553, 674, 1080
NheI	GCTAGC	1 cut(s)	1429
NlaIII	CATG	8 cut(s)	382, 500, 565, 601, 638, 667, 776, 1225
NlaIV	GGNNCC	2 cut(s)	577, 1070
NmuCI	GTSAC	4 cut(s)	151, 967, 1056, 1296
NspV	TTCGAA	1 cut(s)	331
PagI	TCATGA	1 cut(s)	1221
PcsI	WCGNNNNNNNCGW	1 cut(s)	337
PctI	GAATGC	2 cut(s)	1191, 1198
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	3 cut(s)	487, 670, 792
PflMI	CCANNNNNTGG	1 cut(s)	1291
PkrI	GCNGC	2 cut(s)	729, 940
PleI	GAGTC	4 cut(s)	838, 964, 1063, 1303
PpsI	GAGTC	4 cut(s)	838, 964, 1063, 1303
Psp6I	CCWGG	1 cut(s)	814
PspEI	GGTNACC	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	814
PspN4I	GGNNCC	2 cut(s)	577, 1070
PsuI	RGATCY	1 cut(s)	1080
RsaI	GTAC	1 cut(s)	662
RsaNI	GTAC	1 cut(s)	661
RseI	CAYNNNNRTG	1 cut(s)	1063
SaqAI	TTAA	5 cut(s)	308, 810, 908, 1313, 1441
SatI	GCNGC	2 cut(s)	728, 939
Sau3AI	GATC	3 cut(s)	553, 674, 1080
SchI	GAGTC	4 cut(s)	838, 964, 1064, 1304
ScrFI	CCNGG	3 cut(s)	232, 816, 930
SduI	GDGCHC	1 cut(s)	649
SfaNI	GCATC	1 cut(s)	1364
SfuI	TTCGAA	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	1063
SmlI	CTYRAG	1 cut(s)	1342
SmoI	CTYRAG	1 cut(s)	1342
SsiI	CCGC	4 cut(s)	566, 857, 1271, 1301
SspMI	CTAG	3 cut(s)	534, 1212, 1430
StyD4I	CCNGG	3 cut(s)	230, 814, 928
StyI	CCWWGG	2 cut(s)	579, 1073
TaaI	ACNGT	6 cut(s)	96, 245, 251, 358, 992, 1438
TaqI	TCGA	5 cut(s)	258, 303, 331, 673, 831
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	3 cut(s)	487, 670, 792
Tru1I	TTAA	5 cut(s)	308, 810, 908, 1313, 1441
Tru9I	TTAA	5 cut(s)	308, 810, 908, 1313, 1441
TscAI	CASTG	1 cut(s)	972
TseFI	GTSAC	4 cut(s)	151, 967, 1056, 1296
TseI	GCWGC	2 cut(s)	727, 938
Tsp45I	GTSAC	4 cut(s)	151, 967, 1056, 1296
TspDTI	ATGAA	6 cut(s)	273, 550, 614, 651, 1350, 1389
TspRI	CASTG	1 cut(s)	972
Van91I	CCANNNNNTGG	1 cut(s)	1291
XagI	CCTNNNNNAGG	1 cut(s)	773
XapI	RAATTY	4 cut(s)	601, 838, 1033, 1309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1080
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	3 cut(s)	534, 1212, 1430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.