Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Forward (+)

54214807 .. 54219972

Gene Structure 5166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGGGTTTTCGTAATGTTTGCATCGCAGTTACAGCAGTGTTGTTGCTATTTTTCATGACTCTGCACTTGTCCGAGGCTGGCAGCTGGGTGTTACTTGCACGGGAAGAAAACTCCACCAAGAACCAACTTTTCGTTTTAAGGGAATCTTTGCAGAAGGGTCCTGTCCCCGCCGAGGGACCTAGTCCAGTCCCCAACGTCCCTAGTCCTAGGAGTCCTGCCCACCCTGCAATCAACGAGGCCCTTGCTGCTTTTGTTATTTCTATTGTGGTGCTGATCATTGCTGTTATAGCCATTATATGTGTCATTATTAACTGCGTGAAAAAGTCTGGAAGTTCTATTCCAAGTTCTGCCAAGATAACGAGTAGTAACAATACCGACAACGATTCCAACAACAAAGTAGCAGTGGACTTGAGACATGATCAATTTCCAGTAGCTTTTGATTCCCAGGCTGAGTTTCCGACGATCAAAGGGTTTCTAAGCAACATGGCAAGGGAGAAGCCTATAACTTACTCAGCAAAGCAAATTGCAGAATTCACACATAACTATAGGTACTCTAATATATTAGGTTCAGGTGGTTTTGGAGTAGTATATAAAGGGCTTCTCGAAAATGGAGTACAAGTGGCTGTCAAGGTCCTTACCAACCACAATAGGGCTAAGATAGTTGAAGAGCAGTTTATGGCAGAAGTTGGAACCTTGGGAAGAACTTACCATGTCAATCTGGTTAGACTCTATGGCTTCTGCTTCGCCCCCGAAATGAAAGCCCTCGTCTACGAGTACATGGAGAACGGTTCTCTTGACAAGTTATTGTTCAGTGACAATGGAGAAGTAGATTTAGAGAAGCTGCTTGTTATAGCAGTCCAAACTGCAAAGGGGTTGGCTTATTTGCATGAGGAGTGTGAACAAAAAATCATTCACTATGATATTAAGCCCGAAAATGTACTTCTGGATGAGAACTTGAATCCTAAGGTTGCGGATTTTGGACTCGCCAAGCTTTGCAATAGAGGGAGTAGTCGAATGCTCCTAACCAATTTCAGAGGGACAGCAGGATATGCAGCCCCAGAGATGTGGATGCCTTATCCTGTGACTCACAAATGTGATGTTTACAGTTTTGGTATTCTTCTATTTGAGATTGTTGGAAGAAGAAGACACTGCGACGATAATTTGAGCGAGTCCCGAGACTGGCTACCTAAGTGGACATGGAACATGTTTGAGAAAAATGACTTAGCAGCACTATTATTGCGCTGTGGGATCGAAGAGAGAGACAGGGGAAAAGCAGAGAGGATGTTAATGATAGCTCTGTGGTGCATTCAGCATTCACCAGAAGCAAGACCTCTCATGAGCAATGTAGTGCAAATGTTGGAGGGGCATAAAGAAATTACTCCACCTCCTTGCCCCTTTGAACATTTGCAATCTCCACAACTGAATTTCAGTCAAAATAGTGGAACAGATGACGACACTAGTGCTTCGGCATCAGCCACAATAATTGATCCACACCCTAGTGTGGCACATGAAATTGAGCTAGTTGTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

511

Amino Acids

56.72

Weight (kDa)

5.8

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	182 - 451	3.4e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	185 - 453	1.4e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	768
AciI	CCGC	2 cut(s)	168, 971
AclWI	GGATC	2 cut(s)	1256, 1481
AcsI	RAATTY	2 cut(s)	530, 1423
AfaI	GTAC	4 cut(s)	551, 615, 776, 939
AfiI	CCNNNNNNNGG	5 cut(s)	172, 173, 649, 1179, 1501
AflIII	ACRYGT	1 cut(s)	1203
AgsI	TTSAA	3 cut(s)	665, 958, 1400
AhlI	ACTAGT	1 cut(s)	1457
AjnI	CCWGG	1 cut(s)	444
AleI	CACNNNNGTG	2 cut(s)	1092, 1497
AluBI	AGCT	6 cut(s)	84, 434, 841, 991, 1295, 1519
AluI	AGCT	6 cut(s)	84, 434, 841, 991, 1295, 1519
Alw26I	GTCTC	3 cut(s)	406, 1170, 1254
AlwI	GGATC	2 cut(s)	1256, 1481
Ama87I	CYCGRG	1 cut(s)	1173
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	5 cut(s)	81, 245, 841, 1052, 1226
ApoI	RAATTY	2 cut(s)	530, 1423
AspA2I	CCTAGG	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	1242
AspS9I	GGNCC	4 cut(s)	158, 176, 238, 631
AsuHPI	GGTGA	1 cut(s)	1308
AvaI	CYCGRG	1 cut(s)	1173
AvaII	GGWCC	3 cut(s)	158, 176, 631
AvrII	CCTAGG	1 cut(s)	206
AxyI	CCTNAGG	1 cut(s)	963
BbsI	GAAGAC	1 cut(s)	1150
BbvI	GCAGC	5 cut(s)	93, 232, 828, 1064, 1238
BcgI	CGANNNNNNTGC	4 cut(s)	224, 258, 1442, 1476
BciT130I	CCWGG	1 cut(s)	446
BclI	TGATCA	2 cut(s)	273, 418
BcoDI	GTCTC	3 cut(s)	406, 1170, 1254
BcuI	ACTAGT	1 cut(s)	1457
BfaI	CTAG	6 cut(s)	180, 201, 207, 1458, 1497, 1520
BfmI	CTRYAG	1 cut(s)	544
BisI	GCNGC	5 cut(s)	82, 246, 842, 1053, 1227
BlnI	CCTAGG	1 cut(s)	206
BlsI	GCNGC	5 cut(s)	83, 247, 843, 1054, 1228
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	3 cut(s)	158, 176, 631
BmeT110I	CYCGRG	1 cut(s)	1173
BmgT120I	GGNCC	4 cut(s)	158, 176, 238, 631
BmiI	GGNNCC	3 cut(s)	159, 177, 691
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	3 cut(s)	30, 1059, 1478
BpiI	GAAGAC	1 cut(s)	1150
BpuEI	CTTGAG	1 cut(s)	430
BsaJI	CCNNGG	5 cut(s)	72, 171, 206, 444, 693
BsaXI	ACNNNNNCTCC	4 cut(s)	603, 633, 1369, 1399
Bsc4I	CCNNNNNNNGG	5 cut(s)	172, 173, 649, 1179, 1501
Bse1I	ACTGG	3 cut(s)	185, 428, 1184
Bse21I	CCTNAGG	1 cut(s)	963
Bse3DI	GCAATG	2 cut(s)	276, 1348
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	5 cut(s)	72, 171, 206, 444, 693
BseGI	GGATG	3 cut(s)	952, 1074, 1287
BseLI	CCNNNNNNNGG	5 cut(s)	172, 173, 649, 1179, 1501
BseMI	GCAATG	2 cut(s)	276, 1348
BseMII	CTCAG	2 cut(s)	441, 525
BseNI	ACTGG	3 cut(s)	185, 428, 1184
BseRI	GAGGAG	1 cut(s)	905
BseXI	GCAGC	5 cut(s)	93, 232, 828, 1064, 1238
BseYI	CCCAGC	1 cut(s)	84
BsgI	GTGCAG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	1173
BslFI	GGGAC	6 cut(s)	149, 173, 182, 189, 1051, 1156
BslI	CCNNNNNNNGG	5 cut(s)	172, 173, 649, 1179, 1501
BsmAI	GTCTC	3 cut(s)	406, 1170, 1254
BsmFI	GGGAC	6 cut(s)	149, 173, 182, 189, 1051, 1156
BsmI	GAATGC	3 cut(s)	1020, 1305, 1312
BsnI	GGCC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	1173
Bsp143I	GATC	5 cut(s)	273, 418, 462, 1248, 1486
BspACI	CCGC	2 cut(s)	168, 971
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	442, 524
BspHI	TCATGA	2 cut(s)	54, 1335
BspLI	GGNNCC	3 cut(s)	159, 177, 691
BspPI	GGATC	2 cut(s)	1256, 1481
BspQI	GCTCTTC	1 cut(s)	660
BsrDI	GCAATG	2 cut(s)	276, 1348
BsrI	ACTGG	3 cut(s)	185, 428, 1184
BssECI	CCNNGG	5 cut(s)	72, 171, 206, 444, 693
BssMI	GATC	5 cut(s)	273, 418, 462, 1248, 1486
BssT1I	CCWWGG	2 cut(s)	206, 693
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	2 cut(s)	788, 1106
Bst6I	CTCTTC	2 cut(s)	660, 1248
BstAPI	GCANNNNNTGC	1 cut(s)	1049
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	7 cut(s)	450, 476, 511, 654, 963, 1188, 1222
BstF5I	GGATG	3 cut(s)	952, 1074, 1287
BstHHI	GCGC	1 cut(s)	1242
BstKTI	GATC	5 cut(s)	276, 421, 465, 1251, 1489
BstMAI	GTCTC	3 cut(s)	406, 1170, 1254
BstMBI	GATC	5 cut(s)	273, 418, 462, 1248, 1486
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 224, 245, 287, 1049
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	1 cut(s)	1207
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	544
BstV1I	GCAGC	5 cut(s)	93, 232, 828, 1064, 1238
BstV2I	GAAGAC	1 cut(s)	1150
BstXI	CCANNNNNNTGG	1 cut(s)	1065
Bsu36I	CCTNAGG	1 cut(s)	963
BsuRI	GGCC	1 cut(s)	239
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	3 cut(s)	952, 1074, 1287
BtsI	GCAGTG	3 cut(s)	42, 408, 1147
BtsIMutI	CAGTG	4 cut(s)	42, 408, 817, 1147
Cac8I	GCNNGC	1 cut(s)	79
CciI	TCATGA	2 cut(s)	54, 1335
CfoI	GCGC	1 cut(s)	1242
Cfr13I	GGNCC	4 cut(s)	158, 176, 238, 631
Csp6I	GTAC	4 cut(s)	550, 614, 775, 938
CspCI	CAANNNNNGTGG	2 cut(s)	1465, 1500
CviQI	GTAC	4 cut(s)	550, 614, 775, 938
DdeI	CTNAG	7 cut(s)	450, 476, 511, 654, 963, 1188, 1222
DpnI	GATC	5 cut(s)	275, 420, 464, 1250, 1488
DpnII	GATC	5 cut(s)	273, 418, 462, 1248, 1486
Eam1104I	CTCTTC	2 cut(s)	660, 1248
EarI	CTCTTC	2 cut(s)	660, 1248
Eco130I	CCWWGG	2 cut(s)	206, 693
Eco47I	GGWCC	3 cut(s)	158, 176, 631
Eco81I	CCTNAGG	1 cut(s)	963
Eco88I	CYCGRG	1 cut(s)	1173
EcoO109I	RGGNCCY	4 cut(s)	158, 176, 238, 631
EcoRI	GAATTC	1 cut(s)	530
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	2 cut(s)	206, 693
ErhI	CCWWGG	2 cut(s)	206, 693
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FaqI	GGGAC	6 cut(s)	149, 173, 182, 189, 1051, 1156
FauI	CCCGC	1 cut(s)	175
FbaI	TGATCA	2 cut(s)	273, 418
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	5 cut(s)	82, 246, 842, 1053, 1227
FokI	GGATG	3 cut(s)	959, 1081, 1294
Fsp4HI	GCNGC	5 cut(s)	82, 246, 842, 1053, 1227
FspBI	CTAG	6 cut(s)	180, 201, 207, 1458, 1497, 1520
GlaI	GCGC	1 cut(s)	1241
GluI	GCNGC	5 cut(s)	82, 246, 842, 1053, 1227
GsaI	CCCAGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	1242
Hin6I	GCGC	1 cut(s)	1240
HinP1I	GCGC	1 cut(s)	1240
HindIII	AAGCTT	1 cut(s)	989
HphI	GGTGA	1 cut(s)	1308
Hpy166II	GTNNAC	5 cut(s)	406, 769, 899, 1102, 1194
Hpy188I	TCNGA	3 cut(s)	73, 459, 1034
Hpy188III	TCNNGA	7 cut(s)	55, 327, 602, 794, 944, 1173, 1336
Hpy8I	GTNNAC	5 cut(s)	406, 769, 899, 1102, 1194
Hpy99I	CGWCG	2 cut(s)	463, 1157
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	788, 1106
HpyCH4IV	ACGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 224, 245, 287, 1049
HpyF3I	CTNAG	7 cut(s)	450, 476, 511, 654, 963, 1188, 1222
HpySE526I	ACGT	1 cut(s)	195
HspAI	GCGC	1 cut(s)	1240
Ksp22I	TGATCA	2 cut(s)	273, 418
Kzo9I	GATC	5 cut(s)	273, 418, 462, 1248, 1486
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	1 cut(s)	1023
Lsp1109I	GCAGC	5 cut(s)	93, 232, 828, 1064, 1238
LweI	GCATC	3 cut(s)	30, 1059, 1478
MaeI	CTAG	6 cut(s)	180, 201, 207, 1458, 1497, 1520
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	5 cut(s)	28, 90, 365, 812, 1081
MalI	GATC	5 cut(s)	275, 420, 464, 1250, 1488
MboI	GATC	5 cut(s)	273, 418, 462, 1248, 1486
MboII	GAAGA	8 cut(s)	116, 677, 711, 1109, 1149, 1152, 1155, 1265
MluCI	AATT	9 cut(s)	422, 522, 530, 1027, 1159, 1374, 1423, 1482, 1512
MlyI	GAGTC	6 cut(s)	52, 220, 720, 975, 1078, 1178
MmeI	TCCRAC	5 cut(s)	411, 482, 667, 1114, 1338
MseI	TTAA	4 cut(s)	137, 309, 924, 1286
MslI	CAYNNNNRTG	2 cut(s)	1092, 1497
MspA1I	CMGCKG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	446
Mva1269I	GAATGC	3 cut(s)	1020, 1305, 1312
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	5 cut(s)	32, 224, 245, 287, 1049
NdeII	GATC	5 cut(s)	273, 418, 462, 1248, 1486
NlaIV	GGNNCC	3 cut(s)	159, 177, 691
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	2 cut(s)	812, 1081
NspI	RCATGY	1 cut(s)	1207
OliI	CACNNNNGTG	2 cut(s)	1092, 1497
PagI	TCATGA	2 cut(s)	54, 1335
PciI	ACATGT	1 cut(s)	1203
PciSI	GCTCTTC	1 cut(s)	660
PctI	GAATGC	3 cut(s)	1020, 1305, 1312
PfeI	GAWTC	4 cut(s)	143, 383, 440, 958
PflFI	GACNNNGTC	1 cut(s)	180
PkrI	GCNGC	5 cut(s)	83, 247, 843, 1054, 1228
PleI	GAGTC	6 cut(s)	52, 219, 720, 975, 1078, 1177
PpsI	GAGTC	6 cut(s)	52, 219, 720, 975, 1078, 1177
PpuMI	RGGWCCY	3 cut(s)	158, 176, 631
PscI	ACATGT	1 cut(s)	1203
Psp5II	RGGWCCY	3 cut(s)	158, 176, 631
Psp6I	CCWGG	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	3 cut(s)	159, 177, 691
PspPI	GGNCC	4 cut(s)	158, 176, 238, 631
PspPPI	RGGWCCY	3 cut(s)	158, 176, 631
PsyI	GACNNNGTC	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	84
RsaI	GTAC	4 cut(s)	551, 615, 776, 939
RsaNI	GTAC	4 cut(s)	550, 614, 775, 938
RseI	CAYNNNNRTG	2 cut(s)	1092, 1497
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	4 cut(s)	137, 309, 924, 1286
SatI	GCNGC	5 cut(s)	82, 246, 842, 1053, 1227
Sau3AI	GATC	5 cut(s)	273, 418, 462, 1248, 1486
Sau96I	GGNCC	4 cut(s)	158, 176, 238, 631
SchI	GAGTC	6 cut(s)	52, 220, 720, 975, 1078, 1178
ScrFI	CCNGG	1 cut(s)	446
SfaNI	GCATC	3 cut(s)	30, 1059, 1478
SfcI	CTRYAG	1 cut(s)	544
SinI	GGWCC	3 cut(s)	158, 176, 631
SmiMI	CAYNNNNRTG	2 cut(s)	1092, 1497
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
SpeI	ACTAGT	1 cut(s)	1457
Sse9I	AATT	9 cut(s)	422, 522, 530, 1027, 1159, 1374, 1423, 1482, 1512
SsiI	CCGC	2 cut(s)	168, 971
SspMI	CTAG	6 cut(s)	180, 201, 207, 1458, 1497, 1520
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	2 cut(s)	206, 693
TaaI	ACNGT	2 cut(s)	788, 1106
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	4 cut(s)	603, 1012, 1251, 1527
TasI	AATT	9 cut(s)	422, 522, 530, 1027, 1159, 1374, 1423, 1482, 1512
TatI	WGTACW	3 cut(s)	613, 774, 937
TfiI	GAWTC	4 cut(s)	143, 383, 440, 958
Tru1I	TTAA	4 cut(s)	137, 309, 924, 1286
Tru9I	TTAA	4 cut(s)	137, 309, 924, 1286
TscAI	CASTG	4 cut(s)	42, 408, 817, 1154
TseFI	GTSAC	2 cut(s)	812, 1081
TseI	GCWGC	5 cut(s)	81, 245, 841, 1052, 1226
Tsp45I	GTSAC	2 cut(s)	812, 1081
TspDTI	ATGAA	3 cut(s)	43, 770, 1524
TspRI	CASTG	4 cut(s)	42, 408, 817, 1154
Tth111I	GACNNNGTC	1 cut(s)	180
VpaK11BI	GGWCC	3 cut(s)	158, 176, 631
XapI	RAATTY	2 cut(s)	530, 1423
XceI	RCATGY	1 cut(s)	1207
XmaJI	CCTAGG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	768
XspI	CTAG	6 cut(s)	180, 201, 207, 1458, 1497, 1520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.