Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Reverse (-)

12798407 .. 12800321

Gene Structure 1915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G006270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGAGCTCCCAATTTGACCCCACTGTCGAGAGTGACCAGAAATCTTTCAATTCCGCAATCAACGGGGCTGTTGCTGCTTCTGTTATTTCTACTGTGGTACTGATCATTGCTGTTACAGCCATTATATGTGCCATTATTAACTGCGTGAAAAAGTCTGGAAATTCTATTCCAATTTCTGCCAAGATAAGTAGTAGCAATACCGACAACGATTCCAACAACAAAGTAGCAGTGGACTTGAGACGTGATCAATTTCCAGTAGCTTTTGATTCCCAGGCTGAGTTTCCGACAATCAAAGGGTTTCTAAGCAACATGGCGAGAGAGAAGCCTATAACTTACTCAGCAAAGCAAATTGCAGAATTCACACATAACTATAGCTACTCTAACATATTAGGTTCAGGTGGTTTTGGAGTAGTATATAAAGGGCTTCTCGAAAATGGAGTGCAAGTGGCTGTCAAGGTCCTTACGAACAACAATAGGGCTAAGATAGTAGAAGAGCAGTTTATGGCAGAAGTTGGAGCCTTGGGAAGAACTTACCATGTCAATTTGGTTAGACTCTATGGCTTCTGCTTCGCCCCCGAAATGAAAGCCTTTGTCTATGAGTACATGGAGAAAGGTTCTCTTGACAAGTTATTGTTCAGTGACAATGGAGAACTAGATTTAGAGAAGCTTCATGTTATTGCAGTCCAAACTGCAAAAGGGTTGGCTTATTTGCATGAGGAGTGTGAACAAAAGATCATTCACTATGATATTAAGCCCGAAAATGTGCTTCTGGATGAGAACTTGAATCCCAAGGTTGCGGATTTTGGACTCGCCAGGCTTTGCAATAGAGGGAGTAGTCGAATGCTCCTAACTAACTTCAGAGGGACAGCCGGATATGCAGCCCCAGAGATGTGGAAGCCTTATCCTGTGACTCACAAATGTGATGTTTACAGTTTTGGTATTCTTCTCTTTGAGATTGTTGGAAGAAGAAGACACTGCGACGATAATGTGAGCGACTCTCGAGACTGGCTACCTAAGTGGACATGGAACATGTTTGAGAAAAATGACTTAGCAGCACTATTATTGGGCTGTGGGATTGAAGAGAGAGAGAGGGGAAAAGCAGAGAGGATGTTAATGATAGCTCTGTGGTGCATTCAGCATTCACCAGAAGCAAGACCTCTCATGAGCAATGTAGTGCAAATGTTGGAGGGGCATAAAGAAATTACTCCACCTCCTTGCCCCTTTGAACATTTGCAATCTCCACAACTGAATTTCAGTCAAAATAGTGGAACAGATGACAGCACTAGTACTTCAACATCAGCCACAATGATTGATCCCCACCCCAGTGTTGCACATGAAATTGAGCTTGTTGTTGTCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

453

Amino Acids

50.4

Weight (kDa)

5.79

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	124 - 393	4.7e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	127 - 395	3.3e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AciI	CCGC	2 cut(s)	54, 797
AclWI	GGATC	1 cut(s)	1307
AcsI	RAATTY	3 cut(s)	160, 356, 1249
AcuI	CTGAAG	1 cut(s)	841
AfaI	GTAC	3 cut(s)	99, 602, 1288
AflIII	ACRYGT	1 cut(s)	1029
AgsI	TTSAA	5 cut(s)	49, 784, 1079, 1226, 1293
AhlI	ACTAGT	1 cut(s)	1283
AjiI	CACGTC	1 cut(s)	242
AjnI	CCWGG	2 cut(s)	270, 812
AleI	CACNNNNGTG	2 cut(s)	918, 1323
AluBI	AGCT	6 cut(s)	6, 260, 375, 667, 1121, 1345
AluI	AGCT	6 cut(s)	6, 260, 375, 667, 1121, 1345
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	232, 996
AlwI	GGATC	1 cut(s)	1307
Ama87I	CYCGRG	1 cut(s)	999
ApeKI	GCWGC	3 cut(s)	74, 878, 1052
ApoI	RAATTY	3 cut(s)	160, 356, 1249
Asp700I	GAANNNNTTC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	457
AsuHPI	GGTGA	1 cut(s)	1134
AvaI	CYCGRG	1 cut(s)	999
AvaII	GGWCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	976
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	61, 890, 1064
BciT130I	CCWGG	2 cut(s)	272, 814
BclI	TGATCA	2 cut(s)	102, 244
BcoDI	GTCTC	2 cut(s)	232, 996
BcuI	ACTAGT	1 cut(s)	1283
BfaI	CTAG	2 cut(s)	653, 1284
BfmI	CTRYAG	1 cut(s)	370
BisI	GCNGC	3 cut(s)	75, 879, 1053
BlsI	GCNGC	3 cut(s)	76, 880, 1054
BmcAI	AGTACT	1 cut(s)	1288
Bme1390I	CCNGG	2 cut(s)	272, 814
Bme18I	GGWCC	1 cut(s)	457
BmeT110I	CYCGRG	1 cut(s)	999
BmgBI	CACGTC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	2 cut(s)	272, 814
BmrI	ACTGGG	1 cut(s)	1317
BmuI	ACTGGG	1 cut(s)	1317
BpiI	GAAGAC	1 cut(s)	976
BplI	GAGNNNNNCTC	2 cut(s)	982, 1014
BpuEI	CTTGAG	1 cut(s)	256
BsaJI	CCNNGG	3 cut(s)	270, 519, 789
BsaXI	ACNNNNNCTCC	4 cut(s)	429, 459, 1195, 1225
Bse1I	ACTGG	3 cut(s)	254, 1010, 1323
Bse3DI	GCAATG	2 cut(s)	105, 1174
BseBI	CCWGG	2 cut(s)	272, 814
BseDI	CCNNGG	3 cut(s)	270, 519, 789
BseGI	GGATG	2 cut(s)	778, 1113
BseMI	GCAATG	2 cut(s)	105, 1174
BseMII	CTCAG	2 cut(s)	267, 351
BseNI	ACTGG	3 cut(s)	254, 1010, 1323
BseRI	GAGGAG	1 cut(s)	731
BseXI	GCAGC	3 cut(s)	61, 890, 1064
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	999
BsiSI	CCGG	1 cut(s)	870
BslFI	GGGAC	1 cut(s)	877
BsmAI	GTCTC	2 cut(s)	232, 996
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	877
BsmI	GAATGC	3 cut(s)	846, 1131, 1138
BsoBI	CYCGRG	1 cut(s)	999
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	102, 244, 732, 1312
BspACI	CCGC	2 cut(s)	54, 797
BspCNI	CTCAG	2 cut(s)	268, 350
BspHI	TCATGA	1 cut(s)	1161
BspLI	GGNNCC	1 cut(s)	517
BspPI	GGATC	1 cut(s)	1307
BspQI	GCTCTTC	1 cut(s)	486
BsrDI	GCAATG	2 cut(s)	105, 1174
BsrI	ACTGG	3 cut(s)	254, 1010, 1323
BssECI	CCNNGG	3 cut(s)	270, 519, 789
BssMI	GATC	4 cut(s)	102, 244, 732, 1312
BssT1I	CCWWGG	2 cut(s)	519, 789
Bst2UI	CCWGG	2 cut(s)	272, 814
Bst4CI	ACNGT	3 cut(s)	25, 94, 932
Bst6I	CTCTTC	2 cut(s)	486, 1074
BstDEI	CTNAG	6 cut(s)	276, 302, 337, 480, 1014, 1048
BstF5I	GGATG	2 cut(s)	778, 1113
BstKTI	GATC	4 cut(s)	105, 247, 735, 1315
BstMAI	GTCTC	2 cut(s)	232, 996
BstMBI	GATC	4 cut(s)	102, 244, 732, 1312
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 116, 875
BstNI	CCWGG	2 cut(s)	272, 814
BstNSI	RCATGY	1 cut(s)	1033
BstSCI	CCNGG	2 cut(s)	270, 812
BstSFI	CTRYAG	1 cut(s)	370
BstV1I	GCAGC	3 cut(s)	61, 890, 1064
BstV2I	GAAGAC	1 cut(s)	976
BstXI	CCANNNNNNTGG	1 cut(s)	891
BtrI	CACGTC	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	778, 1113
BtsI	GCAGTG	2 cut(s)	234, 973
BtsIMutI	CAGTG	5 cut(s)	21, 234, 643, 973, 1330
CciI	TCATGA	1 cut(s)	1161
Cfr13I	GGNCC	1 cut(s)	457
Csp6I	GTAC	3 cut(s)	98, 601, 1287
CspCI	CAANNNNNGTGG	2 cut(s)	1291, 1326
CviAII	CATG	9 cut(s)	310, 536, 604, 671, 713, 1023, 1030, 1162, 1334
CviQI	GTAC	3 cut(s)	98, 601, 1287
DdeI	CTNAG	6 cut(s)	276, 302, 337, 480, 1014, 1048
DpnI	GATC	4 cut(s)	104, 246, 734, 1314
DpnII	GATC	4 cut(s)	102, 244, 732, 1312
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eam1104I	CTCTTC	2 cut(s)	486, 1074
EarI	CTCTTC	2 cut(s)	486, 1074
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	519, 789
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	841
Eco88I	CYCGRG	1 cut(s)	999
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	270, 812
EcoT14I	CCWWGG	2 cut(s)	519, 789
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	519, 789
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	9 cut(s)	313, 539, 607, 674, 716, 1026, 1033, 1165, 1337
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	1 cut(s)	877
FatI	CATG	9 cut(s)	309, 535, 603, 670, 712, 1022, 1029, 1161, 1333
FbaI	TGATCA	2 cut(s)	102, 244
Fnu4HI	GCNGC	3 cut(s)	75, 879, 1053
FokI	GGATG	2 cut(s)	785, 1120
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	75, 879, 1053
FspBI	CTAG	2 cut(s)	653, 1284
GluI	GCNGC	3 cut(s)	75, 879, 1053
HapII	CCGG	1 cut(s)	870
Hin1II	CATG	9 cut(s)	313, 539, 607, 674, 716, 1026, 1033, 1165, 1337
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	7 cut(s)	209, 266, 552, 784, 807, 910, 995
HpaII	CCGG	1 cut(s)	870
HphI	GGTGA	1 cut(s)	1134
Hpy166II	GTNNAC	4 cut(s)	232, 725, 928, 1020
Hpy188I	TCNGA	3 cut(s)	285, 860, 1358
Hpy188III	TCNNGA	8 cut(s)	28, 156, 428, 620, 770, 999, 1001, 1162
Hpy8I	GTNNAC	4 cut(s)	232, 725, 928, 1020
Hpy99I	CGWCG	1 cut(s)	983
HpyCH4III	ACNGT	3 cut(s)	25, 94, 932
HpyCH4IV	ACGT	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 116, 875
HpyF3I	CTNAG	6 cut(s)	276, 302, 337, 480, 1014, 1048
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	9 cut(s)	313, 539, 607, 674, 716, 1026, 1033, 1165, 1337
Ksp22I	TGATCA	2 cut(s)	102, 244
Kzo9I	GATC	4 cut(s)	102, 244, 732, 1312
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	3 cut(s)	11, 515, 849
Lsp1109I	GCAGC	3 cut(s)	61, 890, 1064
MaeI	CTAG	2 cut(s)	653, 1284
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	4 cut(s)	32, 112, 638, 907
MalI	GATC	4 cut(s)	104, 246, 734, 1314
MboI	GATC	4 cut(s)	102, 244, 732, 1312
MboII	GAAGA	7 cut(s)	503, 537, 935, 975, 978, 981, 1091
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	4 cut(s)	546, 801, 904, 989
MmeI	TCCRAC	5 cut(s)	237, 308, 493, 940, 1164
MnlI	CCTC	8 cut(s)	709, 821, 854, 1083, 1098, 1167, 1180, 1221
MroXI	GAANNNNTTC	1 cut(s)	44
MseI	TTAA	3 cut(s)	138, 750, 1112
MslI	CAYNNNNRTG	2 cut(s)	918, 1323
MspI	CCGG	1 cut(s)	870
MspR9I	CCNGG	2 cut(s)	272, 814
Mva1269I	GAATGC	3 cut(s)	846, 1131, 1138
MvaI	CCWGG	2 cut(s)	272, 814
MwoI	GCNNNNNNNGC	3 cut(s)	74, 116, 875
NdeII	GATC	4 cut(s)	102, 244, 732, 1312
NlaIII	CATG	9 cut(s)	313, 539, 607, 674, 716, 1026, 1033, 1165, 1337
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	3 cut(s)	32, 638, 907
NspI	RCATGY	1 cut(s)	1033
OliI	CACNNNNGTG	2 cut(s)	918, 1323
PaeR7I	CTCGAG	1 cut(s)	999
PagI	TCATGA	1 cut(s)	1161
PciI	ACATGT	1 cut(s)	1029
PciSI	GCTCTTC	1 cut(s)	486
PctI	GAATGC	3 cut(s)	846, 1131, 1138
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	209, 266, 784
PkrI	GCNGC	3 cut(s)	76, 880, 1054
PleI	GAGTC	4 cut(s)	546, 801, 904, 989
PpsI	GAGTC	4 cut(s)	546, 801, 904, 989
PpuMI	RGGWCCY	1 cut(s)	457
PscI	ACATGT	1 cut(s)	1029
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	457
Psp6I	CCWGG	2 cut(s)	270, 812
PspGI	CCWGG	2 cut(s)	270, 812
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	1 cut(s)	457
PspPPI	RGGWCCY	1 cut(s)	457
RsaI	GTAC	3 cut(s)	99, 602, 1288
RsaNI	GTAC	3 cut(s)	98, 601, 1287
RseI	CAYNNNNRTG	2 cut(s)	918, 1323
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	138, 750, 1112
SatI	GCNGC	3 cut(s)	75, 879, 1053
Sau3AI	GATC	4 cut(s)	102, 244, 732, 1312
Sau96I	GGNCC	1 cut(s)	457
ScaI	AGTACT	1 cut(s)	1288
SchI	GAGTC	4 cut(s)	546, 801, 904, 989
ScrFI	CCNGG	2 cut(s)	272, 814
SduI	GDGCHC	1 cut(s)	8
SfcI	CTRYAG	1 cut(s)	370
Sfr274I	CTCGAG	1 cut(s)	999
SinI	GGWCC	1 cut(s)	457
SlaI	CTCGAG	1 cut(s)	999
SmiMI	CAYNNNNRTG	2 cut(s)	918, 1323
SmlI	CTYRAG	2 cut(s)	235, 999
SmoI	CTYRAG	2 cut(s)	235, 999
SpeI	ACTAGT	1 cut(s)	1283
SsiI	CCGC	2 cut(s)	54, 797
SspMI	CTAG	2 cut(s)	653, 1284
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	270, 812
StyI	CCWWGG	2 cut(s)	519, 789
TaaI	ACNGT	3 cut(s)	25, 94, 932
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	4 cut(s)	27, 429, 838, 1000
TatI	WGTACW	2 cut(s)	600, 1286
TfiI	GAWTC	3 cut(s)	209, 266, 784
Tru1I	TTAA	3 cut(s)	138, 750, 1112
Tru9I	TTAA	3 cut(s)	138, 750, 1112
TscAI	CASTG	5 cut(s)	28, 234, 643, 980, 1330
TseFI	GTSAC	3 cut(s)	32, 638, 907
TseI	GCWGC	3 cut(s)	74, 878, 1052
Tsp45I	GTSAC	3 cut(s)	32, 638, 907
TspDTI	ATGAA	3 cut(s)	596, 659, 1350
TspRI	CASTG	5 cut(s)	28, 234, 643, 980, 1330
VpaK11BI	GGWCC	1 cut(s)	457
XapI	RAATTY	3 cut(s)	160, 356, 1249
XceI	RCATGY	1 cut(s)	1033
XhoI	CTCGAG	1 cut(s)	999
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	2 cut(s)	653, 1284
ZrmI	AGTACT	1 cut(s)	1288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.