Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005098.1

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Forward (+)

34115 .. 36171

Gene Structure 2057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005098.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgtggatatgtgaccgaaaagtgaccctaaaccccaacctcgctctgaaatttcagagcgagacagcgctctggatagggtctatgaaacctgcggataaagttgctgcaactggatttttcgtggtggttcccgatttcttttatggtgaccctgtgaatcttgataatcctcaattcgaccgagagtcctggtttaaaactcatagcaaggagtgtgaacaaaagatcattcactatgatattaagcccggaaatgtgcttctggatgagaacttcaatcccaaggttgtggattttggactcgccaggctttgcaatagagggagtagtcgaatgctcctaaccaattttagagggatagccagatatgcagccctagagatgtggaagccttatcctatgactcacaaatgtgatgttcacagttttggtatttttctctttgagattgttggaagaagaagacactgcgacgataatgtgagcaagtcccgagactggctacctaagtggacatggaacatgtttgagaaaaatgacttagcagcactattattgtgttgtggtattgaagagagagacaggggaaaagcagaaaggatgttaatgatagctctgtggtgcattcagcattcaccagaagcaagacctctcatgagcaatgtagtgcaaatgttggaggggcataaagaaattactccatctccttgccccattgaacatttgcaatctgcacaactaaatttcagtcaaaatagtggaacagatgacgacactagtactttggcatcagccacaatgattgatccccaccctagtgttgcgcatgaaattgagcttgttgttgtccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

285

Amino Acids

32.63

Weight (kDa)

6.06

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	828
Acc36I	ACCTGC	1 cut(s)	100
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	1 cut(s)	803
AcsI	RAATTY	2 cut(s)	50, 745
AfaI	GTAC	1 cut(s)	784
AfeI	AGCGCT	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	501
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	3 cut(s)	280, 575, 722
AhdI	GACNNNNNGTC	1 cut(s)	187
AhlI	ACTAGT	1 cut(s)	779
AjnI	CCWGG	2 cut(s)	191, 308
AleI	CACNNNNGTG	2 cut(s)	414, 819
AluBI	AGCT	2 cut(s)	617, 841
AluI	AGCT	2 cut(s)	617, 841
Alw26I	GTCTC	3 cut(s)	56, 492, 576
AlwI	GGATC	1 cut(s)	803
Ama87I	CYCGRG	1 cut(s)	495
Aor51HI	AGCGCT	1 cut(s)	69
ApeKI	GCWGC	3 cut(s)	107, 374, 548
ApoI	RAATTY	2 cut(s)	50, 745
AspLEI	GCGC	2 cut(s)	70, 829
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	161, 630
AvaI	CYCGRG	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	472
BbvI	GCAGC	3 cut(s)	94, 386, 560
BccI	CCATC	1 cut(s)	712
BciT130I	CCWGG	2 cut(s)	193, 310
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	3 cut(s)	56, 492, 576
BcuI	ACTAGT	1 cut(s)	779
BfaI	CTAG	3 cut(s)	380, 780, 819
BfoI	RGCGCY	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	3 cut(s)	108, 375, 549
BlsI	GCNGC	3 cut(s)	109, 376, 550
BmcAI	AGTACT	1 cut(s)	784
Bme1390I	CCNGG	3 cut(s)	193, 252, 310
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	495
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	3 cut(s)	193, 252, 310
BmsI	GCATC	1 cut(s)	800
BpiI	GAAGAC	1 cut(s)	472
BpuMI	CCSGG	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	691, 721
Bsc4I	CCNNNNNNNGG	1 cut(s)	501
Bse1I	ACTGG	2 cut(s)	118, 506
Bse3DI	GCAATG	1 cut(s)	670
BseBI	CCWGG	2 cut(s)	193, 310
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	2 cut(s)	274, 609
BseLI	CCNNNNNNNGG	1 cut(s)	501
BseMI	GCAATG	1 cut(s)	670
BseNI	ACTGG	2 cut(s)	118, 506
BseXI	GCAGC	3 cut(s)	94, 386, 560
BsgI	GTGCAG	1 cut(s)	720
Bsh1285I	CGRYCG	1 cut(s)	184
BsiEI	CGRYCG	1 cut(s)	184
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	1 cut(s)	501
BsmAI	GTCTC	3 cut(s)	56, 492, 576
BsmFI	GGGAC	1 cut(s)	478
BsmI	GAATGC	3 cut(s)	342, 627, 634
BsoBI	CYCGRG	1 cut(s)	495
Bsp143I	GATC	2 cut(s)	228, 808
BspACI	CCGC	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	657
BspLI	GGNNCC	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	100
BspPI	GGATC	1 cut(s)	803
BsrDI	GCAATG	1 cut(s)	670
BsrI	ACTGG	2 cut(s)	118, 506
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	2 cut(s)	228, 808
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	193, 310
Bst4CI	ACNGT	1 cut(s)	428
Bst6I	CTCTTC	1 cut(s)	570
BstDEI	CTNAG	2 cut(s)	510, 544
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	274, 609
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	70, 829
BstKTI	GATC	2 cut(s)	231, 811
BstMAI	GTCTC	3 cut(s)	56, 492, 576
BstMBI	GATC	2 cut(s)	228, 808
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	2 cut(s)	193, 310
BstNSI	RCATGY	1 cut(s)	529
BstPI	GGTNACC	1 cut(s)	149
BstSCI	CCNGG	3 cut(s)	191, 250, 308
BstV1I	GCAGC	3 cut(s)	94, 386, 560
BstV2I	GAAGAC	1 cut(s)	472
BstXI	CCANNNNNNTGG	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	274, 609
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	469
BveI	ACCTGC	1 cut(s)	100
CciI	TCATGA	1 cut(s)	657
CfoI	GCGC	2 cut(s)	70, 829
Csp6I	GTAC	1 cut(s)	783
CspCI	CAANNNNNGTGG	2 cut(s)	787, 822
CviAII	CATG	4 cut(s)	519, 526, 658, 830
CviJI	RGCY	9 cut(s)	250, 313, 365, 377, 394, 505, 617, 797, 841
CviKI_1	RGCY	9 cut(s)	250, 313, 365, 377, 394, 505, 617, 797, 841
CviQI	GTAC	1 cut(s)	783
DdeI	CTNAG	2 cut(s)	510, 544
DpnI	GATC	2 cut(s)	230, 810
DpnII	GATC	2 cut(s)	228, 808
DraI	TTTAAA	1 cut(s)	199
DriI	GACNNNNNGTC	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	570
Eam1105I	GACNNNNNGTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	570
Eco130I	CCWWGG	1 cut(s)	285
Eco47III	AGCGCT	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	495
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	191, 308
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	4 cut(s)	522, 529, 661, 833
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	4 cut(s)	518, 525, 657, 829
Fnu4HI	GCNGC	3 cut(s)	108, 375, 549
FokI	GGATG	2 cut(s)	281, 616
Fsp4HI	GCNGC	3 cut(s)	108, 375, 549
FspBI	CTAG	3 cut(s)	380, 780, 819
FspI	TGCGCA	1 cut(s)	828
GlaI	GCGC	2 cut(s)	69, 828
GluI	GCNGC	3 cut(s)	108, 375, 549
HaeII	RGCGCY	1 cut(s)	71
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	2 cut(s)	70, 829
Hin1II	CATG	4 cut(s)	522, 529, 661, 833
Hin6I	GCGC	2 cut(s)	68, 827
HinP1I	GCGC	2 cut(s)	68, 827
HinfI	GANTC	4 cut(s)	160, 188, 303, 406
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	2 cut(s)	161, 630
Hpy166II	GTNNAC	3 cut(s)	221, 424, 516
Hpy188I	TCNGA	2 cut(s)	48, 57
Hpy188III	TCNNGA	6 cut(s)	73, 134, 164, 266, 495, 658
Hpy8I	GTNNAC	3 cut(s)	221, 424, 516
Hpy99I	CGWCG	1 cut(s)	479
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4V	TGCA	7 cut(s)	110, 318, 374, 627, 673, 730, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	2 cut(s)	510, 544
Hsp92II	CATG	4 cut(s)	522, 529, 661, 833
HspAI	GCGC	2 cut(s)	68, 827
Kzo9I	GATC	2 cut(s)	228, 808
LmnI	GCTCC	1 cut(s)	345
Lsp1109I	GCAGC	3 cut(s)	94, 386, 560
LweI	GCATC	1 cut(s)	800
MaeI	CTAG	3 cut(s)	380, 780, 819
MaeIII	GTNAC	3 cut(s)	11, 22, 149
MalI	GATC	2 cut(s)	230, 810
MboI	GATC	2 cut(s)	228, 808
MboII	GAAGA	4 cut(s)	471, 474, 477, 587
MluCI	AATT	6 cut(s)	50, 176, 349, 696, 745, 834
MlyI	GAGTC	3 cut(s)	197, 297, 400
MmeI	TCCRAC	2 cut(s)	436, 660
MnlI	CCTC	6 cut(s)	50, 183, 317, 350, 663, 676
MseI	TTAA	3 cut(s)	198, 246, 608
MslI	CAYNNNNRTG	2 cut(s)	414, 819
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	3 cut(s)	193, 252, 310
Mva1269I	GAATGC	3 cut(s)	342, 627, 634
MvaI	CCWGG	2 cut(s)	193, 310
MwoI	GCNNNNNNNGC	1 cut(s)	371
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	228, 808
NlaIII	CATG	4 cut(s)	522, 529, 661, 833
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	3 cut(s)	11, 22, 149
NsbI	TGCGCA	1 cut(s)	828
NspI	RCATGY	1 cut(s)	529
OliI	CACNNNNGTG	2 cut(s)	414, 819
PagI	TCATGA	1 cut(s)	657
PciI	ACATGT	1 cut(s)	525
PctI	GAATGC	3 cut(s)	342, 627, 634
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	3 cut(s)	109, 376, 550
PleI	GAGTC	3 cut(s)	196, 297, 400
PpsI	GAGTC	3 cut(s)	196, 297, 400
PscI	ACATGT	1 cut(s)	525
Psp6I	CCWGG	2 cut(s)	191, 308
PspEI	GGTNACC	1 cut(s)	149
PspGI	CCWGG	2 cut(s)	191, 308
PspN4I	GGNNCC	1 cut(s)	132
RsaI	GTAC	1 cut(s)	784
RsaNI	GTAC	1 cut(s)	783
RseI	CAYNNNNRTG	2 cut(s)	414, 819
SaqAI	TTAA	3 cut(s)	198, 246, 608
SatI	GCNGC	3 cut(s)	108, 375, 549
Sau3AI	GATC	2 cut(s)	228, 808
ScaI	AGTACT	1 cut(s)	784
SchI	GAGTC	3 cut(s)	197, 297, 400
ScrFI	CCNGG	3 cut(s)	193, 252, 310
SetI	ASST	7 cut(s)	42, 94, 291, 511, 619, 655, 843
SfaNI	GCATC	1 cut(s)	800
SmiMI	CAYNNNNRTG	2 cut(s)	414, 819
SpeI	ACTAGT	1 cut(s)	779
Sse9I	AATT	6 cut(s)	50, 176, 349, 696, 745, 834
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	3 cut(s)	380, 780, 819
StyD4I	CCNGG	3 cut(s)	191, 250, 308
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	428
TaqI	TCGA	2 cut(s)	180, 334
TaqII	GACCGA	2 cut(s)	30, 198
TasI	AATT	6 cut(s)	50, 176, 349, 696, 745, 834
TatI	WGTACW	1 cut(s)	782
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	3 cut(s)	198, 246, 608
Tru9I	TTAA	3 cut(s)	198, 246, 608
TscAI	CASTG	1 cut(s)	476
TseFI	GTSAC	3 cut(s)	11, 22, 149
TseI	GCWGC	3 cut(s)	107, 374, 548
Tsp45I	GTSAC	3 cut(s)	11, 22, 149
TspDTI	ATGAA	2 cut(s)	101, 846
TspRI	CASTG	1 cut(s)	476
XapI	RAATTY	2 cut(s)	50, 745
XceI	RCATGY	1 cut(s)	529
XspI	CTAG	3 cut(s)	380, 780, 819
ZrmI	AGTACT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.