Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000842.1

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Reverse (-)

18854 .. 23458

Gene Structure 4605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000842.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

atgttggtaaccaactatgtcggttaccgatatattggtacggtagtgccgaaccgatttccagataatggtacgggactgaatcaactaatcaaggcctcattaaacctggagcaacataggagcacggcagttggtcggtttggagcaagagtttctactgtagtactgatcattgttgttaaagccattgtaagtgccattattaactgcgtgcaaaagtctggaagttctattccaatttctgccaagataagtagtagcaataccgacaacgattccaacaacaaagtagcagtggacttgagacgtgatcaatttccagtagcttttgattcccaggctgagtttccgacaatcaaagggtttctaagcaacatggcaagagagaagcctagaacttactcagcaaagcaaattgcagaattcacacataactatagctactctaacatattaggttcaggcggttttggagtagtatataaagggcttctcgaaaatggagtgcaagtggctgtcaaggtccttacgaacaacaatagggctaagatagtagaagagcagtttatggcagaagttggagccttgggaagaacttaccatgtcaatttggttagactctatggcttctgcttcgccctagaaatgaaagcccttgtctatgagtacatggagaaaggttctcttgacaagttattgttcagtgacaatggagaagtagatttcgagaagcttcatgttattgcagtccaaactgcaaaaggccccagagatgtggaagccttatcctgtgagtctgtgactcacaaatgtgatgtttacagttttggtattcttctctttgagattgttggaagaagaagacactacgatgataatgtgagcgagtcccgggactggctacctaagtggacatggaacatgtttgagaaaaataacttagcagcactattattgtgctgtgggatcgaggagagagacaggggaaaagctgagaggatgttactgatagctttgtggtgcattcagcattcaccagaagcgagacctctcatgagcaatttagtgcaaatgttggaggggcataaagaaattactccacccccttacccctttgaacatttgcaatcttcgcaacgaaatttcagtcaaaatagtggaagagatgacgacaatagtacttgttcatcaggcacacttactgatccacgcccttttttaagtgctgcacatgaaattgagctagttgtcgtggaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

420

Amino Acids

46.96

Weight (kDa)

6.57

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	68
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	2 cut(s)	977, 1202
AcsI	RAATTY	2 cut(s)	425, 1144
AfaI	GTAC	5 cut(s)	40, 73, 168, 671, 1183
AfiI	CCNNNNNNNGG	2 cut(s)	68, 900
AflIII	ACRYGT	1 cut(s)	924
AgsI	TTSAA	1 cut(s)	1121
AjiI	CACGTC	1 cut(s)	311
AjnI	CCWGG	2 cut(s)	108, 339
AleI	CACNNNNGTG	1 cut(s)	813
AluBI	AGCT	6 cut(s)	329, 444, 736, 995, 1016, 1246
AluI	AGCT	6 cut(s)	329, 444, 736, 995, 1016, 1246
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	3 cut(s)	301, 975, 1042
AlwI	GGATC	2 cut(s)	977, 1202
Ama87I	CYCGRG	1 cut(s)	894
AoxI	GGCC	2 cut(s)	96, 766
ApeKI	GCWGC	2 cut(s)	947, 1229
ApoI	RAATTY	2 cut(s)	425, 1144
ArsI	GACNNNNNNTTYG	2 cut(s)	1135, 1167
AspS9I	GGNCC	2 cut(s)	526, 767
AsuC2I	CCSGG	2 cut(s)	895, 896
AsuHPI	GGTGA	1 cut(s)	1029
AvaI	CYCGRG	1 cut(s)	894
AvaII	GGWCC	1 cut(s)	526
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
BbsI	GAAGAC	1 cut(s)	871
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	959, 1216
BceAI	ACGGC	1 cut(s)	144
BciT130I	CCWGG	2 cut(s)	110, 341
BclI	TGATCA	2 cut(s)	171, 313
BcnI	CCSGG	2 cut(s)	895, 896
BcoDI	GTCTC	3 cut(s)	301, 975, 1042
BfaI	CTAG	3 cut(s)	396, 644, 1247
BfmI	CTRYAG	2 cut(s)	162, 439
BisI	GCNGC	2 cut(s)	948, 1230
BlsI	GCNGC	2 cut(s)	949, 1231
BmcAI	AGTACT	2 cut(s)	168, 1183
Bme1390I	CCNGG	4 cut(s)	110, 341, 895, 896
Bme18I	GGWCC	1 cut(s)	526
BmeT110I	CYCGRG	1 cut(s)	894
BmgBI	CACGTC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	526, 767
BmiI	GGNNCC	2 cut(s)	586, 769
BmrFI	CCNGG	4 cut(s)	110, 341, 895, 896
BpiI	GAAGAC	1 cut(s)	871
BpmI	CTGGAG	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	325
BpuMI	CCSGG	2 cut(s)	895, 896
BsaI	GGTCTC	1 cut(s)	1042
BsaJI	CCNNGG	3 cut(s)	339, 588, 894
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 498, 528
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 900
Bse1I	ACTGG	2 cut(s)	323, 905
BseBI	CCWGG	2 cut(s)	110, 341
BseDI	CCNNGG	3 cut(s)	339, 588, 894
BseGI	GGATG	1 cut(s)	1008
BseLI	CCNNNNNNNGG	2 cut(s)	68, 900
BseMII	CTCAG	3 cut(s)	336, 420, 987
BseNI	ACTGG	2 cut(s)	323, 905
BseRI	GAGGAG	1 cut(s)	989
BseXI	GCAGC	2 cut(s)	959, 1216
BsgI	GTGCAG	1 cut(s)	1215
BshFI	GGCC	2 cut(s)	98, 768
BsiHKAI	GWGCWC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	894
BsiSI	CCGG	1 cut(s)	895
BslFI	GGGAC	3 cut(s)	90, 877, 911
BslI	CCNNNNNNNGG	2 cut(s)	68, 900
BsmAI	GTCTC	3 cut(s)	301, 975, 1042
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	3 cut(s)	90, 877, 911
BsmI	GAATGC	2 cut(s)	1026, 1033
BsnI	GGCC	2 cut(s)	98, 768
Bso31I	GGTCTC	1 cut(s)	1042
BsoBI	CYCGRG	1 cut(s)	894
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	4 cut(s)	171, 313, 969, 1207
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	2 cut(s)	98, 768
BspCNI	CTCAG	3 cut(s)	337, 419, 988
BspHI	TCATGA	1 cut(s)	1056
BspLI	GGNNCC	2 cut(s)	586, 769
BspPI	GGATC	2 cut(s)	977, 1202
BspQI	GCTCTTC	1 cut(s)	555
BspTNI	GGTCTC	1 cut(s)	1042
BsrI	ACTGG	2 cut(s)	323, 905
BssECI	CCNNGG	3 cut(s)	339, 588, 894
BssMI	GATC	4 cut(s)	171, 313, 969, 1207
BssT1I	CCWWGG	1 cut(s)	588
Bst2UI	CCWGG	2 cut(s)	110, 341
Bst4CI	ACNGT	3 cut(s)	43, 163, 827
Bst6I	CTCTTC	2 cut(s)	555, 1159
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	7 cut(s)	345, 371, 406, 549, 909, 943, 996
BstEII	GGTNACC	2 cut(s)	7, 23
BstF5I	GGATG	1 cut(s)	1008
BstKTI	GATC	4 cut(s)	174, 316, 972, 1210
BstMAI	GTCTC	3 cut(s)	301, 975, 1042
BstMBI	GATC	4 cut(s)	171, 313, 969, 1207
BstMWI	GCNNNNNNNGC	1 cut(s)	1135
BstNI	CCWGG	2 cut(s)	110, 341
BstNSI	RCATGY	1 cut(s)	928
BstPI	GGTNACC	2 cut(s)	7, 23
BstSCI	CCNGG	4 cut(s)	108, 339, 893, 894
BstSFI	CTRYAG	2 cut(s)	162, 439
BstV1I	GCAGC	2 cut(s)	959, 1216
BstV2I	GAAGAC	1 cut(s)	871
BstXI	CCANNNNNNTGG	1 cut(s)	778
BsuRI	GGCC	2 cut(s)	98, 768
BtrI	CACGTC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	1008
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	303, 712
Cac8I	GCNNGC	1 cut(s)	215
CciI	TCATGA	1 cut(s)	1056
Cfr13I	GGNCC	2 cut(s)	526, 767
Cfr9I	CCCGGG	1 cut(s)	894
Csp6I	GTAC	5 cut(s)	39, 72, 167, 670, 1182
CviAII	CATG	8 cut(s)	379, 605, 673, 740, 918, 925, 1057, 1235
CviQI	GTAC	5 cut(s)	39, 72, 167, 670, 1182
DdeI	CTNAG	7 cut(s)	345, 371, 406, 549, 909, 943, 996
DpnI	GATC	4 cut(s)	173, 315, 971, 1209
DpnII	GATC	4 cut(s)	171, 313, 969, 1207
Eam1104I	CTCTTC	2 cut(s)	555, 1159
EarI	CTCTTC	2 cut(s)	555, 1159
Eco130I	CCWWGG	1 cut(s)	588
Eco147I	AGGCCT	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	1042
Eco47I	GGWCC	1 cut(s)	526
Eco88I	CYCGRG	1 cut(s)	894
Eco91I	GGTNACC	2 cut(s)	7, 23
EcoO109I	RGGNCCY	2 cut(s)	526, 767
EcoO65I	GGTNACC	2 cut(s)	7, 23
EcoRI	GAATTC	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	108, 339
EcoT14I	CCWWGG	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	588
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	8 cut(s)	382, 608, 676, 743, 921, 928, 1060, 1238
FalI	AAGNNNNNCTT	2 cut(s)	672, 704
FaqI	GGGAC	3 cut(s)	90, 877, 911
FatI	CATG	8 cut(s)	378, 604, 672, 739, 917, 924, 1056, 1234
FbaI	TGATCA	2 cut(s)	171, 313
Fnu4HI	GCNGC	2 cut(s)	948, 1230
FokI	GGATG	1 cut(s)	1015
Fsp4HI	GCNGC	2 cut(s)	948, 1230
FspBI	CTAG	3 cut(s)	396, 644, 1247
GluI	GCNGC	2 cut(s)	948, 1230
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	98, 768
HapII	CCGG	1 cut(s)	895
Hin1II	CATG	8 cut(s)	382, 608, 676, 743, 921, 928, 1060, 1238
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	7 cut(s)	82, 278, 335, 621, 797, 805, 890
HpaII	CCGG	1 cut(s)	895
HphI	GGTGA	1 cut(s)	1029
Hpy166II	GTNNAC	3 cut(s)	301, 823, 915
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	6 cut(s)	62, 225, 497, 689, 730, 1057
Hpy8I	GTNNAC	3 cut(s)	301, 823, 915
HpyCH4III	ACNGT	3 cut(s)	43, 163, 827
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	9 cut(s)	217, 422, 511, 749, 761, 1026, 1072, 1129, 1232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1135
HpyF3I	CTNAG	7 cut(s)	345, 371, 406, 549, 909, 943, 996
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	8 cut(s)	382, 608, 676, 743, 921, 928, 1060, 1238
Ksp22I	TGATCA	2 cut(s)	171, 313
Kzo9I	GATC	4 cut(s)	171, 313, 969, 1207
LguI	GCTCTTC	1 cut(s)	555
LmnI	GCTCC	4 cut(s)	112, 123, 146, 584
Lsp1109I	GCAGC	2 cut(s)	959, 1216
MaeI	CTAG	3 cut(s)	396, 644, 1247
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	5 cut(s)	7, 23, 707, 802, 1005
MalI	GATC	4 cut(s)	173, 315, 971, 1209
MboI	GATC	4 cut(s)	171, 313, 969, 1207
MboII	GAAGA	8 cut(s)	572, 606, 830, 870, 873, 876, 1125, 1176
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	9 cut(s)	240, 317, 417, 425, 610, 1063, 1095, 1144, 1239
MlyI	GAGTC	4 cut(s)	615, 799, 806, 899
MmeI	TCCRAC	5 cut(s)	306, 377, 562, 835, 1059
MnlI	CCTC	5 cut(s)	109, 967, 993, 1062, 1075
MseI	TTAA	4 cut(s)	104, 183, 207, 1223
MslI	CAYNNNNRTG	2 cut(s)	813, 873
MspI	CCGG	1 cut(s)	895
MspR9I	CCNGG	4 cut(s)	110, 341, 895, 896
Mva1269I	GAATGC	2 cut(s)	1026, 1033
MvaI	CCWGG	2 cut(s)	110, 341
MwoI	GCNNNNNNNGC	1 cut(s)	1135
NciI	CCSGG	2 cut(s)	895, 896
NdeII	GATC	4 cut(s)	171, 313, 969, 1207
NlaIII	CATG	8 cut(s)	382, 608, 676, 743, 921, 928, 1060, 1238
NlaIV	GGNNCC	2 cut(s)	586, 769
NmuCI	GTSAC	2 cut(s)	707, 802
NspI	RCATGY	1 cut(s)	928
OliI	CACNNNNGTG	1 cut(s)	813
PagI	TCATGA	1 cut(s)	1056
PceI	AGGCCT	1 cut(s)	98
PciI	ACATGT	1 cut(s)	924
PciSI	GCTCTTC	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PctI	GAATGC	2 cut(s)	1026, 1033
PfeI	GAWTC	3 cut(s)	82, 278, 335
PflMI	CCANNNNNTGG	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	949, 1231
PleI	GAGTC	4 cut(s)	615, 799, 805, 898
PpsI	GAGTC	4 cut(s)	615, 799, 805, 898
PpuMI	RGGWCCY	1 cut(s)	526
PscI	ACATGT	1 cut(s)	924
Psp5II	RGGWCCY	1 cut(s)	526
Psp6I	CCWGG	2 cut(s)	108, 339
PspEI	GGTNACC	2 cut(s)	7, 23
PspGI	CCWGG	2 cut(s)	108, 339
PspN4I	GGNNCC	2 cut(s)	586, 769
PspPI	GGNCC	2 cut(s)	526, 767
PspPPI	RGGWCCY	1 cut(s)	526
RsaI	GTAC	5 cut(s)	40, 73, 168, 671, 1183
RsaNI	GTAC	5 cut(s)	39, 72, 167, 670, 1182
RseI	CAYNNNNRTG	2 cut(s)	813, 873
SapI	GCTCTTC	1 cut(s)	555
SaqAI	TTAA	4 cut(s)	104, 183, 207, 1223
SatI	GCNGC	2 cut(s)	948, 1230
Sau3AI	GATC	4 cut(s)	171, 313, 969, 1207
Sau96I	GGNCC	2 cut(s)	526, 767
ScaI	AGTACT	2 cut(s)	168, 1183
SchI	GAGTC	4 cut(s)	615, 799, 806, 899
ScrFI	CCNGG	4 cut(s)	110, 341, 895, 896
SduI	GDGCHC	1 cut(s)	128
SfcI	CTRYAG	2 cut(s)	162, 439
SinI	GGWCC	1 cut(s)	526
SmaI	CCCGGG	1 cut(s)	896
SmiMI	CAYNNNNRTG	2 cut(s)	813, 873
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	9 cut(s)	240, 317, 417, 425, 610, 1063, 1095, 1144, 1239
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	3 cut(s)	396, 644, 1247
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	4 cut(s)	108, 339, 893, 894
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	3 cut(s)	43, 163, 827
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	3 cut(s)	498, 729, 972
TasI	AATT	9 cut(s)	240, 317, 417, 425, 610, 1063, 1095, 1144, 1239
TatI	WGTACW	3 cut(s)	166, 669, 1181
TfiI	GAWTC	3 cut(s)	82, 278, 335
Tru1I	TTAA	4 cut(s)	104, 183, 207, 1223
Tru9I	TTAA	4 cut(s)	104, 183, 207, 1223
TscAI	CASTG	2 cut(s)	303, 712
TseFI	GTSAC	2 cut(s)	707, 802
TseI	GCWGC	2 cut(s)	947, 1229
Tsp45I	GTSAC	2 cut(s)	707, 802
TspDTI	ATGAA	4 cut(s)	665, 728, 1179, 1251
TspMI	CCCGGG	1 cut(s)	894
TspRI	CASTG	2 cut(s)	303, 712
Van91I	CCANNNNNTGG	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	526
XapI	RAATTY	2 cut(s)	425, 1144
XceI	RCATGY	1 cut(s)	928
XmaI	CCCGGG	1 cut(s)	894
XspI	CTAG	3 cut(s)	396, 644, 1247
ZrmI	AGTACT	2 cut(s)	168, 1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.