Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Forward (+)

54358301 .. 54364047

Gene Structure 5747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00323540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCAAAAGAGAAGCCTATAACTTACTCAGCAAAGCAAATTGCAGAATTCGCACATAACTATAGCTACTCTAACATATTAGGTTCAGGTGGTTTTGGAGTAGTATATAAAGGGCTTCTCGAAAATGGAGTACAAGTGGCTGTCAAGGTCCTTACGAACAACAATAGGGCTAAGATAGTAGAAGAGCAGTTTATGGCAGAAGTTGGAGCCTTGGGAAGAACCTACCACGTCAATTTGGTTAGACTCTATGGCTTCTTCTTCTCCCCTGAAATGAAAGCCCTCGTCTATGAGTACATGGAGAATGGTTCCCTTGACAAGTTGTTGTTCAGTGAAAATGGACAAGTAGATTCAGAGAAGCTTCATGTTATTGCAGTCCAAACTGCAAAAGGGTTGGCTTATTTGCATGAGGAGTGTGAACAAAAAATCATTCACTATGATATTAAGCCCGAAAATGTGCTTCTGGATGAGAACTTGAATCCTAAGGTTGCGGATTTTGGACTCGCCAAGCTTTGTAATAGAGGGAGTAGTCGGATGCTTCTAACCAATTTCAGAGGGACAGCTGGATATGCAGCCCCAGAGATGTGGAAGCCTTATCCTGTGACTTACAAATGTGATGTTTACAGTTTTGGTATTCTTCTCTTTGAGATTGTTGGAAGAAGAAGACACTGCGATGATAATGTGAGTGAGTCGCGAGATTGGCTACCTAAGTGGACATGGAACATGTTTGAGAAAAATGACTTAGCAGCACTATTATTGCGCTGTGGGATCGAAGAGAGAGACAGGGAAAAAGCAGAGAGGATGTTAATGATAGCTCTGTGGTGCATTCAACATTTACCAGAAGCAAGACCTCTCATGAGCAATGTAGTGCAAATGTTGGAGGGCCATAAAGAAATTACTCCACCTCCTTGCCCCTTTGAACATTTGCAATCTCCACAACTGAATTTCAGTCAAAATAGTGGAACAGATGACGACACTAGTACTTCGGCATCAGCCACAATGATTGATCCCCACCCTATTGTTGCTCATGAAATTGAGCTTGTTCCATCTCTCTCCCACCGCAGTGATCGCCGGTCGACCACTGCTGCAGTGACCACCAATGGTCGCGAATCGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

371

Amino Acids

41.91

Weight (kDa)

5.88

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 290	1.4e-49	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	24 - 292	6.7e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1073
AccII	CGCG	2 cut(s)	691, 1104
AciI	CCGC	2 cut(s)	488, 1057
AclWI	GGATC	2 cut(s)	773, 998
AcsI	RAATTY	2 cut(s)	47, 940
AfaI	GTAC	3 cut(s)	132, 293, 979
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	3 cut(s)	475, 827, 917
AhlI	ACTAGT	1 cut(s)	974
AjiI	CACGTC	1 cut(s)	229
AleI	CACNNNNGTG	1 cut(s)	1059
AluBI	AGCT	6 cut(s)	66, 358, 508, 560, 812, 1036
AluI	AGCT	6 cut(s)	66, 358, 508, 560, 812, 1036
Alw26I	GTCTC	1 cut(s)	771
AlwI	GGATC	2 cut(s)	773, 998
AoxI	GGCC	1 cut(s)	880
ApeKI	GCWGC	3 cut(s)	569, 743, 1082
ApoI	RAATTY	2 cut(s)	47, 940
AspLEI	GCGC	1 cut(s)	759
AspS9I	GGNCC	2 cut(s)	148, 880
AvaII	GGWCC	1 cut(s)	148
AxyI	CCTNAGG	1 cut(s)	480
BbsI	GAAGAC	1 cut(s)	667
BbvI	GCAGC	3 cut(s)	581, 755, 1069
BccI	CCATC	1 cut(s)	1051
BcoDI	GTCTC	1 cut(s)	771
BcuI	ACTAGT	1 cut(s)	974
BfaI	CTAG	1 cut(s)	975
BfmI	CTRYAG	2 cut(s)	61, 1083
BisI	GCNGC	3 cut(s)	570, 744, 1083
BlsI	GCNGC	3 cut(s)	571, 745, 1084
BmcAI	AGTACT	1 cut(s)	979
Bme18I	GGWCC	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	148, 880
BmiI	GGNNCC	2 cut(s)	208, 307
BmsI	GCATC	2 cut(s)	522, 995
BpiI	GAAGAC	1 cut(s)	667
BsaJI	CCNNGG	1 cut(s)	210
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 886, 916
Bse118I	RCCGGY	1 cut(s)	1068
Bse21I	CCTNAGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	865
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	3 cut(s)	469, 537, 804
BseMI	GCAATG	1 cut(s)	865
BseMII	CTCAG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	3 cut(s)	581, 755, 1069
Bsh1236I	CGCG	2 cut(s)	691, 1104
Bsh1285I	CGRYCG	1 cut(s)	1073
BshFI	GGCC	1 cut(s)	882
BsiEI	CGRYCG	1 cut(s)	1073
BsiSI	CCGG	1 cut(s)	1069
BslFI	GGGAC	1 cut(s)	568
BsmAI	GTCTC	1 cut(s)	771
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	1 cut(s)	822
BsnI	GGCC	1 cut(s)	882
Bsp143I	GATC	3 cut(s)	765, 1003, 1063
Bsp68I	TCGCGA	2 cut(s)	691, 1104
BspACI	CCGC	2 cut(s)	488, 1057
BspANI	GGCC	1 cut(s)	882
BspCNI	CTCAG	1 cut(s)	41
BspFNI	CGCG	2 cut(s)	691, 1104
BspHI	TCATGA	2 cut(s)	852, 1024
BspLI	GGNNCC	2 cut(s)	208, 307
BspMAI	CTGCAG	1 cut(s)	1087
BspPI	GGATC	2 cut(s)	773, 998
BspQI	GCTCTTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	865
BsrFI	RCCGGY	1 cut(s)	1068
BssAI	RCCGGY	1 cut(s)	1068
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	765, 1003, 1063
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	623
Bst6I	CTCTTC	2 cut(s)	177, 765
BstDEI	CTNAG	5 cut(s)	28, 171, 480, 705, 739
BstF5I	GGATG	3 cut(s)	469, 537, 804
BstFNI	CGCG	2 cut(s)	691, 1104
BstHHI	GCGC	1 cut(s)	759
BstKTI	GATC	3 cut(s)	768, 1006, 1066
BstMAI	GTCTC	1 cut(s)	771
BstMBI	GATC	3 cut(s)	765, 1003, 1063
BstMCI	CGRYCG	1 cut(s)	1073
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 566, 697, 1065
BstNSI	RCATGY	1 cut(s)	724
BstSFI	CTRYAG	2 cut(s)	61, 1083
BstUI	CGCG	2 cut(s)	691, 1104
BstV1I	GCAGC	3 cut(s)	581, 755, 1069
BstV2I	GAAGAC	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	582
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	882
BtgZI	GCGATG	1 cut(s)	684
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	469, 537, 804
BtsI	GCAGTG	4 cut(s)	664, 1066, 1077, 1092
BtsIMutI	CAGTG	5 cut(s)	334, 664, 1066, 1077, 1092
BtuMI	TCGCGA	2 cut(s)	691, 1104
CciI	TCATGA	2 cut(s)	852, 1024
CfoI	GCGC	1 cut(s)	759
Cfr10I	RCCGGY	1 cut(s)	1068
Cfr13I	GGNCC	2 cut(s)	148, 880
Csp6I	GTAC	3 cut(s)	131, 292, 978
CspCI	CAANNNNNGTGG	2 cut(s)	982, 1017
CviAII	CATG	7 cut(s)	295, 362, 404, 714, 721, 853, 1025
CviQI	GTAC	3 cut(s)	131, 292, 978
DdeI	CTNAG	5 cut(s)	28, 171, 480, 705, 739
DpnI	GATC	3 cut(s)	767, 1005, 1065
DpnII	GATC	3 cut(s)	765, 1003, 1063
Eam1104I	CTCTTC	2 cut(s)	177, 765
EarI	CTCTTC	2 cut(s)	177, 765
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	148
Eco81I	CCTNAGG	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	7 cut(s)	298, 365, 407, 717, 724, 856, 1028
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	7 cut(s)	294, 361, 403, 713, 720, 852, 1024
FblI	GTMKAC	1 cut(s)	1073
Fnu4HI	GCNGC	3 cut(s)	570, 744, 1083
FokI	GGATG	3 cut(s)	476, 544, 811
Fsp4HI	GCNGC	3 cut(s)	570, 744, 1083
FspBI	CTAG	1 cut(s)	975
GlaI	GCGC	1 cut(s)	758
GluI	GCNGC	3 cut(s)	570, 744, 1083
HaeIII	GGCC	1 cut(s)	882
HapII	CCGG	1 cut(s)	1069
HhaI	GCGC	1 cut(s)	759
Hin1II	CATG	7 cut(s)	298, 365, 407, 717, 724, 856, 1028
Hin6I	GCGC	1 cut(s)	757
HinP1I	GCGC	1 cut(s)	757
HincII	GTYRAC	1 cut(s)	1074
HindII	GTYRAC	1 cut(s)	1074
HindIII	AAGCTT	2 cut(s)	356, 506
HinfI	GANTC	6 cut(s)	243, 347, 475, 498, 686, 1106
HpaII	CCGG	1 cut(s)	1069
Hpy166II	GTNNAC	4 cut(s)	416, 619, 711, 1074
Hpy188I	TCNGA	3 cut(s)	352, 531, 551
Hpy188III	TCNNGA	7 cut(s)	119, 461, 690, 853, 1025, 1103, 1113
Hpy8I	GTNNAC	4 cut(s)	416, 619, 711, 1074
Hpy99I	CGWCG	1 cut(s)	1114
HpyCH4III	ACNGT	1 cut(s)	623
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	9 cut(s)	44, 371, 383, 403, 569, 822, 868, 925, 1085
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 566, 697, 1065
HpyF3I	CTNAG	5 cut(s)	28, 171, 480, 705, 739
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	7 cut(s)	298, 365, 407, 717, 724, 856, 1028
HspAI	GCGC	1 cut(s)	757
Kzo9I	GATC	3 cut(s)	765, 1003, 1063
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	9 cut(s)	72, 279, 446, 546, 588, 609, 766, 849, 1082
Lsp1109I	GCAGC	3 cut(s)	581, 755, 1069
LweI	GCATC	2 cut(s)	522, 995
MaeI	CTAG	1 cut(s)	975
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	598, 1087
MalI	GATC	3 cut(s)	767, 1005, 1065
MboI	GATC	3 cut(s)	765, 1003, 1063
MboII	GAAGA	9 cut(s)	194, 228, 247, 250, 626, 666, 669, 672, 782
MluCI	AATT	7 cut(s)	39, 47, 232, 544, 891, 940, 1029
MlyI	GAGTC	3 cut(s)	237, 492, 695
MmeI	TCCRAC	4 cut(s)	184, 509, 631, 855
MnlI	CCTC	8 cut(s)	290, 400, 512, 545, 789, 858, 871, 912
MseI	TTAA	2 cut(s)	441, 803
MslI	CAYNNNNRTG	2 cut(s)	669, 1059
MspA1I	CMGCKG	1 cut(s)	560
MspI	CCGG	1 cut(s)	1069
Mva1269I	GAATGC	1 cut(s)	822
MvnI	CGCG	2 cut(s)	691, 1104
MwoI	GCNNNNNNNGC	4 cut(s)	50, 566, 697, 1065
NdeII	GATC	3 cut(s)	765, 1003, 1063
NlaIII	CATG	7 cut(s)	298, 365, 407, 717, 724, 856, 1028
NlaIV	GGNNCC	2 cut(s)	208, 307
NmuCI	GTSAC	2 cut(s)	598, 1087
NruI	TCGCGA	2 cut(s)	691, 1104
NspI	RCATGY	1 cut(s)	724
OliI	CACNNNNGTG	1 cut(s)	1059
PagI	TCATGA	2 cut(s)	852, 1024
PciI	ACATGT	1 cut(s)	720
PciSI	GCTCTTC	1 cut(s)	177
PctI	GAATGC	1 cut(s)	822
PfeI	GAWTC	3 cut(s)	347, 475, 1106
PkrI	GCNGC	3 cut(s)	571, 745, 1084
PleI	GAGTC	3 cut(s)	237, 492, 694
PpsI	GAGTC	3 cut(s)	237, 492, 694
PpuMI	RGGWCCY	1 cut(s)	148
PscI	ACATGT	1 cut(s)	720
Psp5II	RGGWCCY	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	208, 307
PspPI	GGNCC	2 cut(s)	148, 880
PspPPI	RGGWCCY	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	1087
PvuII	CAGCTG	1 cut(s)	560
RruI	TCGCGA	2 cut(s)	691, 1104
RsaI	GTAC	3 cut(s)	132, 293, 979
RsaNI	GTAC	3 cut(s)	131, 292, 978
RseI	CAYNNNNRTG	2 cut(s)	669, 1059
SalI	GTCGAC	1 cut(s)	1072
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	441, 803
SatI	GCNGC	3 cut(s)	570, 744, 1083
Sau3AI	GATC	3 cut(s)	765, 1003, 1063
Sau96I	GGNCC	2 cut(s)	148, 880
ScaI	AGTACT	1 cut(s)	979
SchI	GAGTC	3 cut(s)	237, 492, 695
SfaNI	GCATC	2 cut(s)	522, 995
SfcI	CTRYAG	2 cut(s)	61, 1083
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	2 cut(s)	669, 1059
SpeI	ACTAGT	1 cut(s)	974
Sse9I	AATT	7 cut(s)	39, 47, 232, 544, 891, 940, 1029
SsiI	CCGC	2 cut(s)	488, 1057
SspMI	CTAG	1 cut(s)	975
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	623
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	120, 768, 1073
TasI	AATT	7 cut(s)	39, 47, 232, 544, 891, 940, 1029
TatI	WGTACW	3 cut(s)	130, 291, 977
TfiI	GAWTC	3 cut(s)	347, 475, 1106
Tru1I	TTAA	2 cut(s)	441, 803
Tru9I	TTAA	2 cut(s)	441, 803
TscAI	CASTG	5 cut(s)	334, 671, 1066, 1084, 1092
TseFI	GTSAC	2 cut(s)	598, 1087
TseI	GCWGC	3 cut(s)	569, 743, 1082
Tsp45I	GTSAC	2 cut(s)	598, 1087
TspDTI	ATGAA	3 cut(s)	287, 350, 1041
TspRI	CASTG	5 cut(s)	334, 671, 1066, 1084, 1092
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	2 cut(s)	47, 940
XceI	RCATGY	1 cut(s)	724
XmiI	GTMKAC	1 cut(s)	1073
XspI	CTAG	1 cut(s)	975
ZrmI	AGTACT	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.