Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017564.1

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Forward (+)

9 .. 869

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017564.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggcagaagttggagccttgggaagaacttaccatgtcaatttggttagactctatggcttctgcttcgcccccgaaatgaaagcccttgtctatgagtacatggagaaaggttctcttgacaagttattgttcagtgacaatggagaactagatttagagaagcttcatgttattgcagtccaaactgcaaaagggttggcttatttgcatgaggagtgtgaacaaaagatcattcactatgatattaagcccgaaaatgtgcttctggatgagaacttgaatcccaaggttgcggattttggactcgccaggctttgcaatagagggagtagtcgaatgctcctaactaacttcagagggacagctggatatgcagccccagagatgtggaagccttatcctgtgactcacaaatgtgatgtttacagttttggtattcttctctttgagattgttggaagaagaagacactgcgacgataatgtgagcgagtctcgagactggctacctaagtggacatggaacatgtttgagaaaaatgacttagcagcactattattgggctgtgggattgaagagagagagaggggaaaagcagagaggatgttaatgatagctctgtggtgcattcagcattcaccagaagcaagacctctcatgagcaatgtagtgcaaatgttggaggggcataaagaaattactccacctccttgcccctttgaacatttgcaatctccacaactgaatttcagtcaaaatagtggaacagatgacggcactagtacttcagcatcagccacaatgattgatccccaccccagtgttgcacatgaaattgagcttgttgttgtccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

286

Amino Acids

32.38

Weight (kDa)

5.48

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	1 cut(s)	806
AcsI	RAATTY	1 cut(s)	748
AcuI	CTGAAG	2 cut(s)	340, 774
AfaI	GTAC	2 cut(s)	101, 787
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	3 cut(s)	283, 578, 725
AhlI	ACTAGT	1 cut(s)	782
AjnI	CCWGG	1 cut(s)	311
AleI	CACNNNNGTG	2 cut(s)	417, 822
AluBI	AGCT	4 cut(s)	166, 368, 620, 844
AluI	AGCT	4 cut(s)	166, 368, 620, 844
Alw26I	GTCTC	2 cut(s)	495, 501
AlwI	GGATC	1 cut(s)	806
Ama87I	CYCGRG	1 cut(s)	498
ApeKI	GCWGC	2 cut(s)	377, 551
ApoI	RAATTY	1 cut(s)	748
AsuHPI	GGTGA	1 cut(s)	633
AvaI	CYCGRG	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	389, 563
BceAI	ACGGC	1 cut(s)	793
BciT130I	CCWGG	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	495, 501
BcuI	ACTAGT	1 cut(s)	782
BfaI	CTAG	2 cut(s)	152, 783
BisI	GCNGC	2 cut(s)	378, 552
BlsI	GCNGC	2 cut(s)	379, 553
BmcAI	AGTACT	1 cut(s)	787
Bme1390I	CCNGG	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	498
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	313
BmrI	ACTGGG	1 cut(s)	816
BmsI	GCATC	1 cut(s)	803
BmuI	ACTGGG	1 cut(s)	816
BpiI	GAAGAC	1 cut(s)	475
BplI	GAGNNNNNCTC	2 cut(s)	481, 513
BsaJI	CCNNGG	2 cut(s)	18, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	694, 724
Bse1I	ACTGG	2 cut(s)	509, 822
Bse3DI	GCAATG	1 cut(s)	673
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	2 cut(s)	18, 288
BseGI	GGATG	2 cut(s)	277, 612
BseMI	GCAATG	1 cut(s)	673
BseNI	ACTGG	2 cut(s)	509, 822
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	389, 563
BsiHKCI	CYCGRG	1 cut(s)	498
BslFI	GGGAC	1 cut(s)	376
BsmAI	GTCTC	2 cut(s)	495, 501
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	3 cut(s)	345, 630, 637
BsoBI	CYCGRG	1 cut(s)	498
Bsp143I	GATC	2 cut(s)	231, 811
BspACI	CCGC	1 cut(s)	296
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	806
BsrDI	GCAATG	1 cut(s)	673
BsrI	ACTGG	2 cut(s)	509, 822
BssECI	CCNNGG	2 cut(s)	18, 288
BssMI	GATC	2 cut(s)	231, 811
BssT1I	CCWWGG	2 cut(s)	18, 288
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	1 cut(s)	573
BstDEI	CTNAG	2 cut(s)	513, 547
BstF5I	GGATG	2 cut(s)	277, 612
BstKTI	GATC	2 cut(s)	234, 814
BstMAI	GTCTC	2 cut(s)	495, 501
BstMBI	GATC	2 cut(s)	231, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	1 cut(s)	313
BstNSI	RCATGY	1 cut(s)	532
BstSCI	CCNGG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	389, 563
BstV2I	GAAGAC	1 cut(s)	475
BstXI	CCANNNNNNTGG	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	277, 612
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	3 cut(s)	142, 472, 829
CciI	TCATGA	1 cut(s)	660
Csp6I	GTAC	2 cut(s)	100, 786
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviAII	CATG	8 cut(s)	35, 103, 170, 212, 522, 529, 661, 833
CviQI	GTAC	2 cut(s)	100, 786
DdeI	CTNAG	2 cut(s)	513, 547
DpnI	GATC	2 cut(s)	233, 813
DpnII	GATC	2 cut(s)	231, 811
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Eco130I	CCWWGG	2 cut(s)	18, 288
Eco57I	CTGAAG	2 cut(s)	340, 774
Eco88I	CYCGRG	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	311
EcoT14I	CCWWGG	2 cut(s)	18, 288
ErhI	CCWWGG	2 cut(s)	18, 288
FaeI	CATG	8 cut(s)	38, 106, 173, 215, 525, 532, 664, 836
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	8 cut(s)	34, 102, 169, 211, 521, 528, 660, 832
Fnu4HI	GCNGC	2 cut(s)	378, 552
FokI	GGATG	2 cut(s)	284, 619
Fsp4HI	GCNGC	2 cut(s)	378, 552
FspBI	CTAG	2 cut(s)	152, 783
GluI	GCNGC	2 cut(s)	378, 552
Hin1II	CATG	8 cut(s)	38, 106, 173, 215, 525, 532, 664, 836
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	5 cut(s)	51, 283, 306, 409, 494
HphI	GGTGA	1 cut(s)	633
Hpy166II	GTNNAC	3 cut(s)	224, 427, 519
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	5 cut(s)	119, 269, 498, 500, 661
Hpy8I	GTNNAC	3 cut(s)	224, 427, 519
Hpy99I	CGWCG	1 cut(s)	482
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4V	TGCA	9 cut(s)	179, 191, 211, 321, 377, 630, 676, 733, 830
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	2 cut(s)	513, 547
Hsp92II	CATG	8 cut(s)	38, 106, 173, 215, 525, 532, 664, 836
Kzo9I	GATC	2 cut(s)	231, 811
LmnI	GCTCC	2 cut(s)	14, 348
LpnPI	CCDG	9 cut(s)	254, 298, 325, 354, 396, 417, 490, 657, 835
Lsp1109I	GCAGC	2 cut(s)	389, 563
LweI	GCATC	1 cut(s)	803
MaeI	CTAG	2 cut(s)	152, 783
MaeIII	GTNAC	2 cut(s)	137, 406
MalI	GATC	2 cut(s)	233, 813
MboI	GATC	2 cut(s)	231, 811
MboII	GAAGA	6 cut(s)	36, 434, 474, 477, 480, 590
MluCI	AATT	4 cut(s)	40, 699, 748, 837
MlyI	GAGTC	4 cut(s)	45, 300, 403, 503
MmeI	TCCRAC	2 cut(s)	439, 663
MnlI	CCTC	8 cut(s)	208, 320, 353, 582, 597, 666, 679, 720
MseI	TTAA	2 cut(s)	249, 611
MslI	CAYNNNNRTG	2 cut(s)	417, 822
MspA1I	CMGCKG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	313
Mva1269I	GAATGC	3 cut(s)	345, 630, 637
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	2 cut(s)	231, 811
NlaIII	CATG	8 cut(s)	38, 106, 173, 215, 525, 532, 664, 836
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	137, 406
NspI	RCATGY	1 cut(s)	532
OliI	CACNNNNGTG	2 cut(s)	417, 822
PaeR7I	CTCGAG	1 cut(s)	498
PagI	TCATGA	1 cut(s)	660
PciI	ACATGT	1 cut(s)	528
PctI	GAATGC	3 cut(s)	345, 630, 637
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	379, 553
PleI	GAGTC	4 cut(s)	45, 300, 403, 502
PpsI	GAGTC	4 cut(s)	45, 300, 403, 502
PscI	ACATGT	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	2 cut(s)	101, 787
RsaNI	GTAC	2 cut(s)	100, 786
RseI	CAYNNNNRTG	2 cut(s)	417, 822
SaqAI	TTAA	2 cut(s)	249, 611
SatI	GCNGC	2 cut(s)	378, 552
Sau3AI	GATC	2 cut(s)	231, 811
ScaI	AGTACT	1 cut(s)	787
SchI	GAGTC	4 cut(s)	45, 300, 403, 503
ScrFI	CCNGG	1 cut(s)	313
SetI	ASST	9 cut(s)	115, 168, 294, 370, 514, 622, 658, 712, 846
SfaNI	GCATC	1 cut(s)	803
Sfr274I	CTCGAG	1 cut(s)	498
SlaI	CTCGAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	2 cut(s)	417, 822
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
SpeI	ACTAGT	1 cut(s)	782
Sse9I	AATT	4 cut(s)	40, 699, 748, 837
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	2 cut(s)	152, 783
StyD4I	CCNGG	1 cut(s)	311
StyI	CCWWGG	2 cut(s)	18, 288
TaaI	ACNGT	1 cut(s)	431
TaqI	TCGA	2 cut(s)	337, 499
TasI	AATT	4 cut(s)	40, 699, 748, 837
TatI	WGTACW	2 cut(s)	99, 785
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	2 cut(s)	249, 611
Tru9I	TTAA	2 cut(s)	249, 611
TscAI	CASTG	3 cut(s)	142, 479, 829
TseFI	GTSAC	2 cut(s)	137, 406
TseI	GCWGC	2 cut(s)	377, 551
Tsp45I	GTSAC	2 cut(s)	137, 406
TspDTI	ATGAA	3 cut(s)	95, 158, 849
TspRI	CASTG	3 cut(s)	142, 479, 829
XapI	RAATTY	1 cut(s)	748
XceI	RCATGY	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	498
XspI	CTAG	2 cut(s)	152, 783
ZrmI	AGTACT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.