Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003315.1

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Forward (+)

24596 .. 26151

Gene Structure 1556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003315.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

atgagcaccgaagatgacttcttcaataacagtgtcaaagatttcaattccgtattcaaaacggctgttgttgcttctgttgtttcttctgtggtgatgatcattgctgtttcagccattgtatatgccattattaactgcttgaaaaattatggagatcctattgcaaaatatgcccggctaacaagtagtaacgataccgacaatgattccaacaacaaagtagcagtggatctaagacgtgatcaatttcccgtagcttttgattcccaggctgagtttccaacaatcaaagggttcctaagcaacatggcaaaagagaagcctataacttactcagcaaagcaaattgcagaattcacacataactatagctactctaacatattaggttcaggtggttttggagtagtatataaagggcttctcgaaaatggagtgcaagtggctgtcaaggtccttacgaacaacaatagggctaagatagtagaagagcagtttatggcagaagttggagccttgggaagaacctaccacgtcaatttggttagactctatggcttctgcttctcccctgaaatgaaagccctcgtctatgagtacatggagaatggttcccttgacaagttattgttcagtgaaaatggagaagtagattcagagaagcttcatgttattgcagtccaaactgcaaaagggttggcttatttgcatgaggagtgtgaacaaaaaatcattcactatgatattaagcccgaaaatgtgcttcttgatgagaaccttaatcccaaggttgcggattttggacttgccaagctttgcaatagagggaatagtgaaatgctcctaaccaatttcagaggaacagtcggatatgcagccccagagatgtggaagccttatcctgtgactcacaaatgtgatgtttacagttttggtattcttctctttgagattgttggaagaagaagacactgcgacgataacgtgagcgagtcccgggactggctacctatgtggacatggaacatgtttgagaaaaataacttagcagcactattattgcgctgtgggatcgaggagagagacaggggaaaagctgagaggatgttactggtagctttgtggtgcattcagcattcaccagaagcgagacctctcatgagcaatgtagtgcagatgttggagggccatagagaaattactccaccgccttgcccctttgaacagttgcaatctccgcaactaaatttcagtcaaaatagtggaacagatgacgacaatagtacttctgcatcaggcacacttactgatccgcgccgttttttaagtgctgcacatgaaattgagctagttgtcgtggaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

455

Amino Acids

51.09

Weight (kDa)

5.3

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1318
AciI	CCGC	4 cut(s)	797, 1211, 1241, 1316
AclWI	GGATC	4 cut(s)	152, 240, 1082, 1307
AcsI	RAATTY	2 cut(s)	356, 1249
AfaI	GTAC	2 cut(s)	602, 1288
AfiI	CCNNNNNNNGG	1 cut(s)	1005
AflIII	ACRYGT	1 cut(s)	1029
AgsI	TTSAA	5 cut(s)	25, 46, 58, 145, 1226
AjiI	CACGTC	2 cut(s)	242, 538
AjnI	CCWGG	1 cut(s)	270
AleI	CACNNNNGTG	1 cut(s)	918
AluBI	AGCT	7 cut(s)	260, 375, 667, 817, 1100, 1121, 1351
AluI	AGCT	7 cut(s)	260, 375, 667, 817, 1100, 1121, 1351
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	1080, 1147
AlwI	GGATC	4 cut(s)	152, 240, 1082, 1307
Ama87I	CYCGRG	1 cut(s)	999
AoxI	GGCC	1 cut(s)	1189
ApeKI	GCWGC	3 cut(s)	878, 1052, 1334
ApoI	RAATTY	2 cut(s)	356, 1249
AspLEI	GCGC	2 cut(s)	1068, 1320
AspS9I	GGNCC	2 cut(s)	457, 1189
AsuC2I	CCSGG	3 cut(s)	178, 1000, 1001
AsuHPI	GGTGA	2 cut(s)	106, 1134
AvaI	CYCGRG	1 cut(s)	999
AvaII	GGWCC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	976
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	890, 1064, 1321
BceAI	ACGGC	2 cut(s)	78, 1305
BciT130I	CCWGG	1 cut(s)	272
BclI	TGATCA	2 cut(s)	99, 244
BcnI	CCSGG	3 cut(s)	178, 1000, 1001
BcoDI	GTCTC	2 cut(s)	1080, 1147
BfaI	CTAG	1 cut(s)	1352
BfmI	CTRYAG	1 cut(s)	370
BisI	GCNGC	3 cut(s)	879, 1053, 1335
BlsI	GCNGC	3 cut(s)	880, 1054, 1336
BmcAI	AGTACT	1 cut(s)	1288
Bme1390I	CCNGG	4 cut(s)	178, 272, 1000, 1001
Bme18I	GGWCC	1 cut(s)	457
BmeT110I	CYCGRG	1 cut(s)	999
BmgBI	CACGTC	2 cut(s)	242, 538
BmgT120I	GGNCC	2 cut(s)	457, 1189
BmiI	GGNNCC	3 cut(s)	299, 517, 616
BmrFI	CCNGG	4 cut(s)	178, 272, 1000, 1001
BmsI	GCATC	1 cut(s)	1304
BpiI	GAAGAC	1 cut(s)	976
Bpu10I	CCTNAGC	1 cut(s)	302
BpuMI	CCSGG	3 cut(s)	178, 1000, 1001
BsaI	GGTCTC	1 cut(s)	1147
BsaJI	CCNNGG	4 cut(s)	270, 519, 789, 999
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	1005
Bse1I	ACTGG	2 cut(s)	1010, 1119
Bse3DI	GCAATG	2 cut(s)	102, 1174
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	4 cut(s)	270, 519, 789, 999
BseGI	GGATG	1 cut(s)	1113
BseLI	CCNNNNNNNGG	1 cut(s)	1005
BseMI	GCAATG	2 cut(s)	102, 1174
BseMII	CTCAG	3 cut(s)	267, 351, 1092
BseNI	ACTGG	2 cut(s)	1010, 1119
BseRI	GAGGAG	2 cut(s)	731, 1094
BseXI	GCAGC	3 cut(s)	890, 1064, 1321
BsgI	GTGCAG	2 cut(s)	1196, 1320
Bsh1236I	CGCG	1 cut(s)	1318
BshFI	GGCC	1 cut(s)	1191
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	999
BsiSI	CCGG	2 cut(s)	178, 1000
BslFI	GGGAC	2 cut(s)	982, 1016
BslI	CCNNNNNNNGG	1 cut(s)	1005
BsmAI	GTCTC	2 cut(s)	1080, 1147
BsmFI	GGGAC	2 cut(s)	982, 1016
BsmI	GAATGC	2 cut(s)	1131, 1138
BsnI	GGCC	1 cut(s)	1191
Bso31I	GGTCTC	1 cut(s)	1147
BsoBI	CYCGRG	1 cut(s)	999
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	6 cut(s)	99, 157, 232, 244, 1074, 1312
BspACI	CCGC	4 cut(s)	797, 1211, 1241, 1316
BspANI	GGCC	1 cut(s)	1191
BspCNI	CTCAG	3 cut(s)	268, 350, 1093
BspFNI	CGCG	1 cut(s)	1318
BspHI	TCATGA	1 cut(s)	1161
BspLI	GGNNCC	3 cut(s)	299, 517, 616
BspPI	GGATC	4 cut(s)	152, 240, 1082, 1307
BspQI	GCTCTTC	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	1147
BsrDI	GCAATG	2 cut(s)	102, 1174
BsrI	ACTGG	2 cut(s)	1010, 1119
BssECI	CCNNGG	4 cut(s)	270, 519, 789, 999
BssMI	GATC	6 cut(s)	99, 157, 232, 244, 1074, 1312
BssT1I	CCWWGG	2 cut(s)	519, 789
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	4 cut(s)	32, 868, 932, 1230
Bst6I	CTCTTC	1 cut(s)	486
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstDEI	CTNAG	7 cut(s)	236, 276, 302, 337, 480, 1048, 1101
BstF5I	GGATG	1 cut(s)	1113
BstFNI	CGCG	1 cut(s)	1318
BstHHI	GCGC	2 cut(s)	1068, 1320
BstKTI	GATC	6 cut(s)	102, 160, 235, 247, 1077, 1315
BstMAI	GTCTC	2 cut(s)	1080, 1147
BstMBI	GATC	6 cut(s)	99, 157, 232, 244, 1074, 1312
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 113, 173, 1240
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	1033
BstSCI	CCNGG	4 cut(s)	176, 270, 998, 999
BstSFI	CTRYAG	1 cut(s)	370
BstUI	CGCG	1 cut(s)	1318
BstV1I	GCAGC	3 cut(s)	890, 1064, 1321
BstV2I	GAAGAC	1 cut(s)	976
BstX2I	RGATCY	2 cut(s)	157, 232
BstXI	CCANNNNNNTGG	1 cut(s)	891
BstYI	RGATCY	2 cut(s)	157, 232
BsuRI	GGCC	1 cut(s)	1191
BtrI	CACGTC	2 cut(s)	242, 538
BtsCI	GGATG	1 cut(s)	1113
BtsI	GCAGTG	2 cut(s)	234, 973
BtsIMutI	CAGTG	4 cut(s)	37, 234, 643, 973
CciI	TCATGA	1 cut(s)	1161
CfoI	GCGC	2 cut(s)	1068, 1320
Cfr13I	GGNCC	2 cut(s)	457, 1189
Cfr9I	CCCGGG	1 cut(s)	999
Csp6I	GTAC	2 cut(s)	601, 1287
CviAII	CATG	8 cut(s)	310, 604, 671, 713, 1023, 1030, 1162, 1340
CviQI	GTAC	2 cut(s)	601, 1287
DdeI	CTNAG	7 cut(s)	236, 276, 302, 337, 480, 1048, 1101
DpnI	GATC	6 cut(s)	101, 159, 234, 246, 1076, 1314
DpnII	GATC	6 cut(s)	99, 157, 232, 244, 1074, 1312
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco130I	CCWWGG	2 cut(s)	519, 789
Eco31I	GGTCTC	1 cut(s)	1147
Eco47I	GGWCC	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	999
EcoO109I	RGGNCCY	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	2 cut(s)	519, 789
ErhI	CCWWGG	2 cut(s)	519, 789
FaeI	CATG	8 cut(s)	313, 607, 674, 716, 1026, 1033, 1165, 1343
FaqI	GGGAC	2 cut(s)	982, 1016
FatI	CATG	8 cut(s)	309, 603, 670, 712, 1022, 1029, 1161, 1339
FbaI	TGATCA	2 cut(s)	99, 244
Fnu4HI	GCNGC	3 cut(s)	879, 1053, 1335
FokI	GGATG	1 cut(s)	1120
Fsp4HI	GCNGC	3 cut(s)	879, 1053, 1335
FspBI	CTAG	1 cut(s)	1352
GlaI	GCGC	2 cut(s)	1067, 1319
GluI	GCNGC	3 cut(s)	879, 1053, 1335
HaeIII	GGCC	1 cut(s)	1191
HapII	CCGG	2 cut(s)	178, 1000
HhaI	GCGC	2 cut(s)	1068, 1320
Hin1II	CATG	8 cut(s)	313, 607, 674, 716, 1026, 1033, 1165, 1343
Hin6I	GCGC	2 cut(s)	1066, 1318
HinP1I	GCGC	2 cut(s)	1066, 1318
HindIII	AAGCTT	2 cut(s)	665, 815
HinfI	GANTC	6 cut(s)	209, 266, 552, 656, 910, 995
HpaII	CCGG	2 cut(s)	178, 1000
HphI	GGTGA	2 cut(s)	106, 1134
Hpy166II	GTNNAC	3 cut(s)	725, 928, 1020
Hpy188I	TCNGA	3 cut(s)	661, 860, 872
Hpy188III	TCNNGA	3 cut(s)	428, 770, 1162
Hpy8I	GTNNAC	3 cut(s)	725, 928, 1020
Hpy99I	CGWCG	1 cut(s)	983
HpyCH4III	ACNGT	4 cut(s)	32, 868, 932, 1230
HpyCH4IV	ACGT	3 cut(s)	241, 537, 987
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 113, 173, 1240
HpyF3I	CTNAG	7 cut(s)	236, 276, 302, 337, 480, 1048, 1101
HpySE526I	ACGT	3 cut(s)	241, 537, 987
Hsp92II	CATG	8 cut(s)	313, 607, 674, 716, 1026, 1033, 1165, 1343
HspAI	GCGC	2 cut(s)	1066, 1318
Ksp22I	TGATCA	2 cut(s)	99, 244
Kzo9I	GATC	6 cut(s)	99, 157, 232, 244, 1074, 1312
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	515, 849
Lsp1109I	GCAGC	3 cut(s)	890, 1064, 1321
LweI	GCATC	1 cut(s)	1304
MaeI	CTAG	1 cut(s)	1352
MaeII	ACGT	3 cut(s)	241, 537, 987
MaeIII	GTNAC	3 cut(s)	191, 907, 1110
MalI	GATC	6 cut(s)	101, 159, 234, 246, 1076, 1314
MboI	GATC	6 cut(s)	99, 157, 232, 244, 1074, 1312
MboII	GAAGA	9 cut(s)	13, 23, 78, 503, 537, 935, 975, 978, 981
MflI	RGATCY	2 cut(s)	157, 232
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	546, 904, 1004
MmeI	TCCRAC	6 cut(s)	237, 308, 493, 850, 940, 1164
MnlI	CCTC	8 cut(s)	599, 709, 821, 854, 1072, 1098, 1167, 1180
MseI	TTAA	4 cut(s)	135, 750, 783, 1328
MslI	CAYNNNNRTG	1 cut(s)	918
MspI	CCGG	2 cut(s)	178, 1000
MspR9I	CCNGG	4 cut(s)	178, 272, 1000, 1001
Mva1269I	GAATGC	2 cut(s)	1131, 1138
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	1318
MwoI	GCNNNNNNNGC	4 cut(s)	71, 113, 173, 1240
NciI	CCSGG	3 cut(s)	178, 1000, 1001
NdeII	GATC	6 cut(s)	99, 157, 232, 244, 1074, 1312
NlaIII	CATG	8 cut(s)	313, 607, 674, 716, 1026, 1033, 1165, 1343
NlaIV	GGNNCC	3 cut(s)	299, 517, 616
NmuCI	GTSAC	1 cut(s)	907
NspI	RCATGY	1 cut(s)	1033
OliI	CACNNNNGTG	1 cut(s)	918
PagI	TCATGA	1 cut(s)	1161
PciI	ACATGT	1 cut(s)	1029
PciSI	GCTCTTC	1 cut(s)	486
PctI	GAATGC	2 cut(s)	1131, 1138
PfeI	GAWTC	3 cut(s)	209, 266, 656
PkrI	GCNGC	3 cut(s)	880, 1054, 1336
PleI	GAGTC	3 cut(s)	546, 904, 1003
PpsI	GAGTC	3 cut(s)	546, 904, 1003
PpuMI	RGGWCCY	1 cut(s)	457
PscI	ACATGT	1 cut(s)	1029
Psp5II	RGGWCCY	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	3 cut(s)	299, 517, 616
PspPI	GGNCC	2 cut(s)	457, 1189
PspPPI	RGGWCCY	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	157, 232
RsaI	GTAC	2 cut(s)	602, 1288
RsaNI	GTAC	2 cut(s)	601, 1287
RseI	CAYNNNNRTG	1 cut(s)	918
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	4 cut(s)	135, 750, 783, 1328
SatI	GCNGC	3 cut(s)	879, 1053, 1335
Sau3AI	GATC	6 cut(s)	99, 157, 232, 244, 1074, 1312
Sau96I	GGNCC	2 cut(s)	457, 1189
ScaI	AGTACT	1 cut(s)	1288
SchI	GAGTC	3 cut(s)	546, 904, 1004
ScrFI	CCNGG	4 cut(s)	178, 272, 1000, 1001
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	1304
SfcI	CTRYAG	1 cut(s)	370
SinI	GGWCC	1 cut(s)	457
SmaI	CCCGGG	1 cut(s)	1001
SmiMI	CAYNNNNRTG	1 cut(s)	918
SsiI	CCGC	4 cut(s)	797, 1211, 1241, 1316
SspMI	CTAG	1 cut(s)	1352
StyD4I	CCNGG	4 cut(s)	176, 270, 998, 999
StyI	CCWWGG	2 cut(s)	519, 789
TaaI	ACNGT	4 cut(s)	32, 868, 932, 1230
TaiI	ACGT	3 cut(s)	244, 540, 990
TaqI	TCGA	2 cut(s)	429, 1077
TatI	WGTACW	2 cut(s)	600, 1286
TfiI	GAWTC	3 cut(s)	209, 266, 656
Tru1I	TTAA	4 cut(s)	135, 750, 783, 1328
Tru9I	TTAA	4 cut(s)	135, 750, 783, 1328
TscAI	CASTG	4 cut(s)	37, 234, 643, 980
TseFI	GTSAC	1 cut(s)	907
TseI	GCWGC	3 cut(s)	878, 1052, 1334
Tsp45I	GTSAC	1 cut(s)	907
TspDTI	ATGAA	3 cut(s)	596, 659, 1356
TspGWI	ACGGA	1 cut(s)	40
TspMI	CCCGGG	1 cut(s)	999
TspRI	CASTG	4 cut(s)	37, 234, 643, 980
VpaK11BI	GGWCC	1 cut(s)	457
XapI	RAATTY	2 cut(s)	356, 1249
XceI	RCATGY	1 cut(s)	1033
XmaI	CCCGGG	1 cut(s)	999
XspI	CTAG	1 cut(s)	1352
ZrmI	AGTACT	1 cut(s)	1288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.