Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Reverse (-)

6664347 .. 6667041

Gene Structure 2695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G089700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGAGCTCTGTTGATAGTTTTGGAGTATCCTCAACGTCACCGGACAAAACCTTCAATTCCTCCATGGACAAGATGGTGGCTGCTTCTGTTGTTTCTGGCGTGGTGTTTATCATTGCTGTTGCAGCCATTATATACGCCATTATTAACTGCGCCAAGAAGGCAGGAAGTTTTCCAATCTCTGCTCGGATAGTCAGCAGCGTTGACAGCACCGGCAAGGACTCCAACCAAGTAGCAATAGACGTAAGAGCTGATCAGTTTCCCGTAAAAGTTGATTTTCCAACAACAATCAAAGGGTTTCTTAGCAACATGGCAAGAGAGAAGCCTATAGCTTTCTCACCTAAACAAATTGCAGAGTTCACAAATAATTATAACCCCGCCAACTTGTTGGGTTCAGGTGCTTTCGGAGTAGTATATAAAGGGCTTCTCGTCGATGGAGTGGAAGTGGCTGTCAAGGTCCTTACCAACAATAATAGTGCTAAGATAGTTGAAGAGCAGTTCATGGCAGAAGTTGGCACTTTGGGAAGAATTTGTCACATGAATTTGGTTAGACTTTATGGTTTCTGCTTCGACCCCGAATTGAAAGCACTTGTCTATGAGTACATGGAGAATGGATCGCTTGACAAGTTATTGTTCGACGAGAACAAACAAGTAGAATTGGAGAAGCTTCATGATATTGCAGTACAAATAGCACAAGGATTAGCTTATTTGCATGAGGGGTGTGGAAAAAGAATCATTCATTACGATATTAAGCCCGAAAATGTACTTCTTGATGAGAATTTGAATCCAAAGGTTGCAGATTTTGGCCTTGCAAAGCTTTGCAACAGGGGAAGTAGTCAAATGGTGTTAACCAACGTTAGAGGGACAGCAGGATATGCAGCTCCAGATGTATGGAAGCCTTATCCTGTGACTCACAAATGTGATGTGTACAGTTTTGGTATTGTTCTCTTTGAGATTGTTGGAAGGAGAAGACATCTTGATGTTAATGCAAACGAGTCAAGTGAATGGCTTCCAAAGTGGACATGGAACATGTATAACAAAAATGAATTGGCGGTGTTGGTGTCTCGTTGCGGGATTGAAGAGAAAGACAGGGAAAAAGCAGAGAGGATGTTTTTGGTAGCTTTGTTGTGCATTCACAACTCACCAGAAGAAAGACCTCTCATGAGCAATGTGGTGAAGATGTTGGAGGGACATATGGTGATTCCTCCACCACCTTTTCCATTTGAACATGGGCAATCTCCTCCACGAAATTTATCCCAACGTAGTGGAACAGATGAAGGCTCGGATACTTCTGCATCAAGCACAAAGACTTCCGAAACAAATGAGATTGAGCTAGCTGCAGTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

449

Amino Acids

49.34

Weight (kDa)

5.61

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AciI	CCGC	3 cut(s)	375, 1049, 1068
AclI	AACGTT	1 cut(s)	852
AclWI	GGATC	1 cut(s)	619
AcsI	RAATTY	4 cut(s)	525, 538, 775, 1246
AfaI	GTAC	4 cut(s)	599, 681, 762, 926
AflIII	ACRYGT	1 cut(s)	1026
AgsI	TTSAA	7 cut(s)	55, 488, 580, 781, 1076, 1223, 1343
AleI	CACNNNNGTG	1 cut(s)	915
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	1065
AlwI	GGATC	1 cut(s)	619
AoxI	GGCC	1 cut(s)	802
ApeKI	GCWGC	5 cut(s)	80, 122, 195, 875, 1334
ApoI	RAATTY	4 cut(s)	525, 538, 775, 1246
Asp700I	GAANNNNTTC	1 cut(s)	1005
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	5 cut(s)	30, 327, 1131, 1183, 1207
AsuNHI	GCTAGC	1 cut(s)	1330
AvaII	GGWCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	973
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	5 cut(s)	67, 134, 207, 887, 1321
BccI	CCATC	2 cut(s)	67, 425
BciVI	GTATCC	2 cut(s)	37, 1276
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	1065
BfaI	CTAG	1 cut(s)	1331
BfmI	CTRYAG	2 cut(s)	324, 1335
BfuI	GTATCC	2 cut(s)	37, 1276
BglI	GCCNNNNNGGC	1 cut(s)	158
BisI	GCNGC	5 cut(s)	81, 123, 196, 876, 1335
BlsI	GCNGC	5 cut(s)	82, 124, 197, 877, 1336
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	454
BmsI	GCATC	1 cut(s)	1301
BmtI	GCTAGC	1 cut(s)	1334
BpiI	GAAGAC	1 cut(s)	973
BpmI	CTGGAG	1 cut(s)	864
BsaJI	CCNNGG	1 cut(s)	63
BsaWI	WCCGGW	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bse118I	RCCGGY	1 cut(s)	209
Bse3DI	GCAATG	2 cut(s)	111, 1171
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	1110
BseMI	GCAATG	2 cut(s)	111, 1171
BseRI	GAGGAG	1 cut(s)	1227
BseXI	GCAGC	5 cut(s)	67, 134, 207, 887, 1321
BshFI	GGCC	1 cut(s)	804
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	41, 210
BslFI	GGGAC	2 cut(s)	874, 1200
BsmAI	GTCTC	1 cut(s)	1065
BsmFI	GGGAC	2 cut(s)	874, 1200
BsmI	GAATGC	1 cut(s)	1128
BsnI	GGCC	1 cut(s)	804
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	924
Bsp143I	GATC	2 cut(s)	250, 611
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	3 cut(s)	375, 1049, 1068
BspANI	GGCC	1 cut(s)	804
BspHI	TCATGA	2 cut(s)	667, 1158
BspMAI	CTGCAG	1 cut(s)	1339
BspOI	GCTAGC	1 cut(s)	1334
BspPI	GGATC	1 cut(s)	619
BspQI	GCTCTTC	1 cut(s)	483
BsrDI	GCAATG	2 cut(s)	111, 1171
BsrFI	RCCGGY	1 cut(s)	209
BsrGI	TGTACA	1 cut(s)	924
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	250, 611
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	929
Bst6I	CTCTTC	2 cut(s)	483, 1071
BstAPI	GCANNNNNTGC	1 cut(s)	872
BstAUI	TGTACA	1 cut(s)	924
BstC8I	GCNNGC	1 cut(s)	1332
BstDEI	CTNAG	2 cut(s)	299, 477
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	1110
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	2 cut(s)	253, 614
BstMAI	GTCTC	1 cut(s)	1065
BstMBI	GATC	2 cut(s)	250, 611
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 158, 204, 872
BstNSI	RCATGY	1 cut(s)	1030
BstSFI	CTRYAG	2 cut(s)	324, 1335
BstV1I	GCAGC	5 cut(s)	67, 134, 207, 887, 1321
BstV2I	GAAGAC	1 cut(s)	973
BstXI	CCANNNNNNTGG	3 cut(s)	385, 888, 1262
BsuI	GTATCC	2 cut(s)	37, 1276
BsuRI	GGCC	1 cut(s)	804
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	1110
Cac8I	GCNNGC	1 cut(s)	1332
CciI	TCATGA	2 cut(s)	667, 1158
CfoI	GCGC	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	454
Csp6I	GTAC	4 cut(s)	598, 680, 761, 925
CviQI	GTAC	4 cut(s)	598, 680, 761, 925
DdeI	CTNAG	2 cut(s)	299, 477
DpnI	GATC	2 cut(s)	252, 613
DpnII	GATC	2 cut(s)	250, 611
Eam1104I	CTCTTC	2 cut(s)	483, 1071
EarI	CTCTTC	2 cut(s)	483, 1071
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	63
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	2 cut(s)	874, 1200
FauI	CCCGC	2 cut(s)	382, 1061
FauNDI	CATATG	1 cut(s)	1191
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	5 cut(s)	81, 123, 196, 876, 1335
FokI	GGATG	1 cut(s)	1117
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	5 cut(s)	81, 123, 196, 876, 1335
FspBI	CTAG	1 cut(s)	1331
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	5 cut(s)	81, 123, 196, 876, 1335
GsuI	CTGGAG	1 cut(s)	864
HaeIII	GGCC	1 cut(s)	804
HapII	CCGG	2 cut(s)	41, 210
HhaI	GCGC	1 cut(s)	152
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	2 cut(s)	202, 846
HindII	GTYRAC	2 cut(s)	202, 846
HindIII	AAGCTT	2 cut(s)	662, 812
HinfI	GANTC	6 cut(s)	218, 729, 781, 907, 992, 1198
HpaI	GTTAAC	1 cut(s)	846
HpaII	CCGG	2 cut(s)	41, 210
HphI	GGTGA	5 cut(s)	30, 327, 1131, 1183, 1207
Hpy166II	GTNNAC	5 cut(s)	202, 357, 846, 925, 1017
Hpy188I	TCNGA	4 cut(s)	186, 404, 1282, 1312
Hpy188III	TCNNGA	5 cut(s)	668, 767, 881, 974, 1159
Hpy8I	GTNNAC	5 cut(s)	202, 357, 846, 925, 1017
Hpy99I	CGWCG	2 cut(s)	431, 638
HpyAV	CCTTC	4 cut(s)	61, 151, 954, 1268
HpyCH4III	ACNGT	1 cut(s)	929
HpyCH4IV	ACGT	4 cut(s)	35, 240, 852, 1258
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 158, 204, 872
HpyF3I	CTNAG	2 cut(s)	299, 477
HpySE526I	ACGT	4 cut(s)	35, 240, 852, 1258
HspAI	GCGC	1 cut(s)	150
Ksp22I	TGATCA	1 cut(s)	250
KspAI	GTTAAC	1 cut(s)	846
Kzo9I	GATC	2 cut(s)	250, 611
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	1 cut(s)	883
Lsp1109I	GCAGC	5 cut(s)	67, 134, 207, 887, 1321
LweI	GCATC	1 cut(s)	1301
MaeI	CTAG	1 cut(s)	1331
MaeII	ACGT	4 cut(s)	35, 240, 852, 1258
MaeIII	GTNAC	3 cut(s)	36, 530, 904
MalI	GATC	2 cut(s)	252, 613
MboI	GATC	2 cut(s)	250, 611
MboII	GAAGA	6 cut(s)	500, 534, 978, 1088, 1157, 1186
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	212, 901, 1001
MmeI	TCCRAC	4 cut(s)	246, 302, 937, 1161
MnlI	CCTC	9 cut(s)	40, 70, 706, 851, 1095, 1164, 1177, 1212, 1248
MroXI	GAANNNNTTC	1 cut(s)	1005
MseI	TTAA	4 cut(s)	144, 747, 845, 981
MslI	CAYNNNNRTG	2 cut(s)	915, 975
MspI	CCGG	2 cut(s)	41, 210
Mva1269I	GAATGC	1 cut(s)	1128
MwoI	GCNNNNNNNGC	4 cut(s)	122, 158, 204, 872
NcoI	CCATGG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	1191
NdeII	GATC	2 cut(s)	250, 611
NheI	GCTAGC	1 cut(s)	1330
NmuCI	GTSAC	3 cut(s)	36, 530, 904
NspI	RCATGY	1 cut(s)	1030
OliI	CACNNNNGTG	1 cut(s)	915
PagI	TCATGA	2 cut(s)	667, 1158
PciI	ACATGT	1 cut(s)	1026
PciSI	GCTCTTC	1 cut(s)	483
PctI	GAATGC	1 cut(s)	1128
PdmI	GAANNNNTTC	1 cut(s)	1005
PfeI	GAWTC	3 cut(s)	729, 781, 1198
PkrI	GCNGC	5 cut(s)	82, 124, 197, 877, 1336
PleI	GAGTC	3 cut(s)	212, 901, 1000
PpsI	GAGTC	3 cut(s)	212, 901, 1000
PpuMI	RGGWCCY	1 cut(s)	454
PscI	ACATGT	1 cut(s)	1026
PsiI	TTATAA	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	852
Psp5II	RGGWCCY	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	454
PspPPI	RGGWCCY	1 cut(s)	454
PstI	CTGCAG	1 cut(s)	1339
RsaI	GTAC	4 cut(s)	599, 681, 762, 926
RsaNI	GTAC	4 cut(s)	598, 680, 761, 925
RseI	CAYNNNNRTG	2 cut(s)	915, 975
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	4 cut(s)	144, 747, 845, 981
SatI	GCNGC	5 cut(s)	81, 123, 196, 876, 1335
Sau3AI	GATC	2 cut(s)	250, 611
Sau96I	GGNCC	1 cut(s)	454
SchI	GAGTC	3 cut(s)	212, 901, 1001
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	1301
SfcI	CTRYAG	2 cut(s)	324, 1335
SinI	GGWCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	2 cut(s)	915, 975
SsiI	CCGC	3 cut(s)	375, 1049, 1068
SspMI	CTAG	1 cut(s)	1331
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	929
TaiI	ACGT	4 cut(s)	38, 243, 855, 1261
TaqI	TCGA	3 cut(s)	429, 567, 633
TatI	WGTACW	4 cut(s)	597, 679, 760, 924
TfiI	GAWTC	3 cut(s)	729, 781, 1198
Tru1I	TTAA	4 cut(s)	144, 747, 845, 981
Tru9I	TTAA	4 cut(s)	144, 747, 845, 981
TseFI	GTSAC	3 cut(s)	36, 530, 904
TseI	GCWGC	5 cut(s)	80, 122, 195, 875, 1334
Tsp45I	GTSAC	3 cut(s)	36, 530, 904
TspDTI	ATGAA	6 cut(s)	487, 551, 656, 725, 1056, 1287
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	4 cut(s)	525, 538, 775, 1246
XceI	RCATGY	1 cut(s)	1030
XcmI	CCANNNNNNNNNTGG	2 cut(s)	70, 1017
XmnI	GAANNNNTTC	1 cut(s)	1005
XspI	CTAG	1 cut(s)	1331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.