Rmu_sc0000842.1_g000033

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000842.1
OG0003270
Physical Location & Seq
Reverse (-)
97029 .. 97810
782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000842.1_g000033.1.cds

Sequence Viewer

Length: 699 bp
atgaaagccctcatctatgagtacatggagaatgggttggcttatttgcatgaggagtgtgaacaaaagatcattcactatgatattaagcccggaaatgtgcttctggatgagaacttcaatcccaaggttgtggattttggactcgccaggctttgcaatagagggagtagtcgaatgctcctaaccaattttagagggatagccagatatgcagccctagagatgtggaagccttatcctatgactcacaaatgtgatgttcacagttttggtatttttctctttgagattgttggaagaagaagacactgcgacgataatgtgagcaagtcccgagactggctacctaagtggacatggaacatgtttgagaaaaatgacttagcagcactattattgtgttgtggtattgaagagagagacaggggaaaagcagaaaggatgttaatgatagctctgtggtgcattcagcattcaccagaagcaagacctctcatgagcaatgtagtgcaaatgttggaggggcataaagaaattactccatctccttgccccattgaacatttgcaatctgcacaactaaatttcagtcaaaatagtggaacagatgacgacactagtactttggcatcagccacaatgattgatccccaccctagtgttgcgcatgaaattgagcttgttgttgtccaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

232

Amino Acids

26.65

Weight (kDa)

5.79

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 669
AclWI GGATC 1 cut(s) 644
AcsI RAATTY 1 cut(s) 586
AfaI GTAC 2 cut(s) 23, 625
AfiI CCNNNNNNNGG 1 cut(s) 342
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 3 cut(s) 121, 416, 563
AhlI ACTAGT 1 cut(s) 620
AjnI CCWGG 1 cut(s) 149
AleI CACNNNNGTG 2 cut(s) 255, 660
AluBI AGCT 2 cut(s) 458, 682
AluI AGCT 2 cut(s) 458, 682
Alw26I GTCTC 2 cut(s) 333, 417
AlwI GGATC 1 cut(s) 644
Ama87I CYCGRG 1 cut(s) 336
ApeKI GCWGC 2 cut(s) 215, 389
ApoI RAATTY 1 cut(s) 586
AspLEI GCGC 1 cut(s) 670
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 471
AvaI CYCGRG 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 227, 401
BccI CCATC 1 cut(s) 553
BciT130I CCWGG 1 cut(s) 151
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 2 cut(s) 333, 417
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 3 cut(s) 221, 621, 660
BisI GCNGC 2 cut(s) 216, 390
BlsI GCNGC 2 cut(s) 217, 391
BmcAI AGTACT 1 cut(s) 625
Bme1390I CCNGG 2 cut(s) 93, 151
BmeT110I CYCGRG 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 93, 151
BmsI GCATC 1 cut(s) 641
BpiI GAAGAC 1 cut(s) 313
BpuMI CCSGG 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 126
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 532, 562
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse1I ACTGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 511
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 2 cut(s) 115, 450
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMI GCAATG 1 cut(s) 511
BseNI ACTGG 1 cut(s) 347
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 2 cut(s) 227, 401
BsgI GTGCAG 1 cut(s) 561
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 2 cut(s) 333, 417
BsmFI GGGAC 1 cut(s) 319
BsmI GAATGC 3 cut(s) 183, 468, 475
BsoBI CYCGRG 1 cut(s) 336
Bsp143I GATC 2 cut(s) 69, 649
BspHI TCATGA 1 cut(s) 498
BspPI GGATC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 511
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 69, 649
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 411
BstDEI CTNAG 2 cut(s) 351, 385
BstF5I GGATG 2 cut(s) 115, 450
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 2 cut(s) 72, 652
BstMAI GTCTC 2 cut(s) 333, 417
BstMBI GATC 2 cut(s) 69, 649
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 2 cut(s) 91, 149
BstV1I GCAGC 2 cut(s) 227, 401
BstV2I GAAGAC 1 cut(s) 313
BstXI CCANNNNNNTGG 1 cut(s) 133
BtsCI GGATG 2 cut(s) 115, 450
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 310
CciI TCATGA 1 cut(s) 498
CfoI GCGC 1 cut(s) 670
Csp6I GTAC 2 cut(s) 22, 624
CspCI CAANNNNNGTGG 2 cut(s) 628, 663
CviAII CATG 6 cut(s) 25, 50, 360, 367, 499, 671
CviQI GTAC 2 cut(s) 22, 624
DdeI CTNAG 2 cut(s) 351, 385
DpnI GATC 2 cut(s) 71, 651
DpnII GATC 2 cut(s) 69, 649
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 6 cut(s) 28, 53, 363, 370, 502, 674
FaqI GGGAC 1 cut(s) 319
FatI CATG 6 cut(s) 24, 49, 359, 366, 498, 670
Fnu4HI GCNGC 2 cut(s) 216, 390
FokI GGATG 2 cut(s) 122, 457
Fsp4HI GCNGC 2 cut(s) 216, 390
FspBI CTAG 3 cut(s) 221, 621, 660
FspI TGCGCA 1 cut(s) 669
GlaI GCGC 1 cut(s) 669
GluI GCNGC 2 cut(s) 216, 390
HapII CCGG 1 cut(s) 93
HhaI GCGC 1 cut(s) 670
Hin1II CATG 6 cut(s) 28, 53, 363, 370, 502, 674
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HinfI GANTC 2 cut(s) 144, 247
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 471
Hpy166II GTNNAC 3 cut(s) 62, 265, 357
Hpy188III TCNNGA 3 cut(s) 107, 336, 499
Hpy8I GTNNAC 3 cut(s) 62, 265, 357
Hpy99I CGWCG 1 cut(s) 320
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 7 cut(s) 49, 159, 215, 468, 514, 571, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 2 cut(s) 351, 385
Hsp92II CATG 6 cut(s) 28, 53, 363, 370, 502, 674
HspAI GCGC 1 cut(s) 668
Kzo9I GATC 2 cut(s) 69, 649
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 8 cut(s) 92, 106, 136, 163, 220, 328, 412, 495
Lsp1109I GCAGC 2 cut(s) 227, 401
LweI GCATC 1 cut(s) 641
MaeI CTAG 3 cut(s) 221, 621, 660
MalI GATC 2 cut(s) 71, 651
MboI GATC 2 cut(s) 69, 649
MboII GAAGA 4 cut(s) 312, 315, 318, 428
MluCI AATT 4 cut(s) 190, 537, 586, 675
MlyI GAGTC 2 cut(s) 138, 241
MmeI TCCRAC 2 cut(s) 277, 501
MnlI CCTC 6 cut(s) 20, 46, 158, 191, 504, 517
MseI TTAA 2 cut(s) 87, 449
MslI CAYNNNNRTG 2 cut(s) 255, 660
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 2 cut(s) 93, 151
Mva1269I GAATGC 3 cut(s) 183, 468, 475
MvaI CCWGG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 212
NciI CCSGG 1 cut(s) 93
NdeII GATC 2 cut(s) 69, 649
NlaIII CATG 6 cut(s) 28, 53, 363, 370, 502, 674
NsbI TGCGCA 1 cut(s) 669
NspI RCATGY 1 cut(s) 370
OliI CACNNNNGTG 2 cut(s) 255, 660
PagI TCATGA 1 cut(s) 498
PciI ACATGT 1 cut(s) 366
PctI GAATGC 3 cut(s) 183, 468, 475
PkrI GCNGC 2 cut(s) 217, 391
PleI GAGTC 2 cut(s) 138, 241
PpsI GAGTC 2 cut(s) 138, 241
PscI ACATGT 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
RsaI GTAC 2 cut(s) 23, 625
RsaNI GTAC 2 cut(s) 22, 624
RseI CAYNNNNRTG 2 cut(s) 255, 660
SaqAI TTAA 2 cut(s) 87, 449
SatI GCNGC 2 cut(s) 216, 390
Sau3AI GATC 2 cut(s) 69, 649
ScaI AGTACT 1 cut(s) 625
SchI GAGTC 2 cut(s) 138, 241
ScrFI CCNGG 2 cut(s) 93, 151
SetI ASST 5 cut(s) 132, 352, 460, 496, 684
SfaNI GCATC 1 cut(s) 641
SmiMI CAYNNNNRTG 2 cut(s) 255, 660
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 4 cut(s) 190, 537, 586, 675
SspMI CTAG 3 cut(s) 221, 621, 660
StyD4I CCNGG 2 cut(s) 91, 149
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 175
TasI AATT 4 cut(s) 190, 537, 586, 675
TatI WGTACW 2 cut(s) 21, 623
Tru1I TTAA 2 cut(s) 87, 449
Tru9I TTAA 2 cut(s) 87, 449
TscAI CASTG 1 cut(s) 317
TseI GCWGC 2 cut(s) 215, 389
TspDTI ATGAA 2 cut(s) 17, 687
TspRI CASTG 1 cut(s) 317
XapI RAATTY 1 cut(s) 586
XceI RCATGY 1 cut(s) 370
XspI CTAG 3 cut(s) 221, 621, 660
ZrmI AGTACT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.