Rh1AG079200

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003270
Physical Location & Seq
Reverse (-)
13374390 .. 13374911
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG079200.1

Sequence Viewer

Length: 522 bp
ATGCTCCTAACCAATTTTAGAGGGACAGCCGGATATGCAGCCTTAGAGATGTGGAAGCCTTTTCCTATGACTCACAAATGTGATGTTTACAGTTTTGGTATTTTTCTCTTTGAGATTGTTGGAAGAAGAAGACATTGCGACGATAATGTGAGCGAGTCCCGAGACTGGCTACCTAAGTGGACATGGAACATGTTTGAGAAAAATGACTTAGCAGCACTATTATTGCATTGTGGGATCGAAGAGAGAGACAGGGGAAAAGCAGAGAGGATGTTAATGATAGCTCTGTGGTGCATTCAGCATTCACCAGAAGCAAGACCTCTCATGAGCAATGTAGTGCAAATGTTGGAGGGGCATAAAGAAATTACTCCACCTCCTTGCCCCTTTGAACATTTGCAATCTGCACAACTGAATTTCAGTCAAAATAGTGGAACAGATGATGACACTAGTACTTTGGCATCAGCCACAATTATTGATCCCCACCCTAGTGTTGCGCATGAAATTGAGCTTGTTGTTGTCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

173

Amino Acids

19.77

Weight (kDa)

5.41

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 12 - 115 3.9e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 492
AclWI GGATC 2 cut(s) 242, 467
AcsI RAATTY 1 cut(s) 409
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 1 cut(s) 165
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 1 cut(s) 386
AhlI ACTAGT 1 cut(s) 443
AleI CACNNNNGTG 2 cut(s) 78, 483
AluBI AGCT 2 cut(s) 281, 505
AluI AGCT 2 cut(s) 281, 505
Alw26I GTCTC 2 cut(s) 156, 240
AlwI GGATC 2 cut(s) 242, 467
Ama87I CYCGRG 1 cut(s) 159
ApeKI GCWGC 2 cut(s) 38, 212
ApoI RAATTY 1 cut(s) 409
AspLEI GCGC 1 cut(s) 493
AsuHPI GGTGA 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 50, 224
BcoDI GTCTC 2 cut(s) 156, 240
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 2 cut(s) 444, 483
BisI GCNGC 2 cut(s) 39, 213
BlsI GCNGC 2 cut(s) 40, 214
BmcAI AGTACT 1 cut(s) 448
BmeT110I CYCGRG 1 cut(s) 159
BmsI GCATC 1 cut(s) 464
BpiI GAAGAC 1 cut(s) 136
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 170
Bse3DI GCAATG 2 cut(s) 133, 334
BseGI GGATG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMI GCAATG 2 cut(s) 133, 334
BseNI ACTGG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 50, 224
BsgI GTGCAG 1 cut(s) 384
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 2 cut(s) 37, 142
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 2 cut(s) 156, 240
BsmFI GGGAC 2 cut(s) 37, 142
BsmI GAATGC 2 cut(s) 291, 298
BsoBI CYCGRG 1 cut(s) 159
Bsp143I GATC 2 cut(s) 234, 472
BspHI TCATGA 1 cut(s) 321
BspPI GGATC 2 cut(s) 242, 467
BsrDI GCAATG 2 cut(s) 133, 334
BsrI ACTGG 1 cut(s) 170
BssMI GATC 2 cut(s) 234, 472
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 234
BstDEI CTNAG 3 cut(s) 43, 174, 208
BstF5I GGATG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 493
BstKTI GATC 2 cut(s) 237, 475
BstMAI GTCTC 2 cut(s) 156, 240
BstMBI GATC 2 cut(s) 234, 472
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 50, 224
BstV2I GAAGAC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 273
CciI TCATGA 1 cut(s) 321
CfoI GCGC 1 cut(s) 493
Csp6I GTAC 1 cut(s) 447
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviAII CATG 4 cut(s) 183, 190, 322, 494
CviJI RGCY 7 cut(s) 29, 41, 58, 169, 281, 461, 505
CviKI_1 RGCY 7 cut(s) 29, 41, 58, 169, 281, 461, 505
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 3 cut(s) 43, 174, 208
DpnI GATC 2 cut(s) 236, 474
DpnII GATC 2 cut(s) 234, 472
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 159
FaeI CATG 4 cut(s) 186, 193, 325, 497
FaiI YATR 7 cut(s) 36, 68, 184, 191, 323, 354, 495
FaqI GGGAC 2 cut(s) 37, 142
FatI CATG 4 cut(s) 182, 189, 321, 493
Fnu4HI GCNGC 2 cut(s) 39, 213
FokI GGATG 1 cut(s) 280
Fsp4HI GCNGC 2 cut(s) 39, 213
FspBI CTAG 2 cut(s) 444, 483
FspI TGCGCA 1 cut(s) 492
GlaI GCGC 1 cut(s) 492
GluI GCNGC 2 cut(s) 39, 213
HapII CCGG 1 cut(s) 30
HhaI GCGC 1 cut(s) 493
Hin1II CATG 4 cut(s) 186, 193, 325, 497
Hin6I GCGC 1 cut(s) 491
HinP1I GCGC 1 cut(s) 491
HinfI GANTC 2 cut(s) 70, 155
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 294
Hpy166II GTNNAC 2 cut(s) 88, 180
Hpy188III TCNNGA 2 cut(s) 159, 322
Hpy8I GTNNAC 2 cut(s) 88, 180
Hpy99I CGWCG 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 6 cut(s) 38, 226, 291, 337, 394, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 3 cut(s) 43, 174, 208
Hsp92II CATG 4 cut(s) 186, 193, 325, 497
HspAI GCGC 1 cut(s) 491
Kzo9I GATC 2 cut(s) 234, 472
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 4 cut(s) 43, 151, 235, 318
Lsp1109I GCAGC 2 cut(s) 50, 224
LweI GCATC 1 cut(s) 464
MaeI CTAG 2 cut(s) 444, 483
MalI GATC 2 cut(s) 236, 474
MboI GATC 2 cut(s) 234, 472
MboII GAAGA 4 cut(s) 135, 138, 141, 251
MluCI AATT 5 cut(s) 13, 360, 409, 465, 498
MlyI GAGTC 2 cut(s) 64, 164
MmeI TCCRAC 2 cut(s) 100, 324
MnlI CCTC 5 cut(s) 14, 258, 327, 340, 381
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 2 cut(s) 78, 483
MspI CCGG 1 cut(s) 30
Mva1269I GAATGC 2 cut(s) 291, 298
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 2 cut(s) 234, 472
NlaIII CATG 4 cut(s) 186, 193, 325, 497
NsbI TGCGCA 1 cut(s) 492
NspI RCATGY 1 cut(s) 193
OliI CACNNNNGTG 2 cut(s) 78, 483
PagI TCATGA 1 cut(s) 321
PciI ACATGT 1 cut(s) 189
PctI GAATGC 2 cut(s) 291, 298
PkrI GCNGC 2 cut(s) 40, 214
PleI GAGTC 2 cut(s) 64, 163
PpsI GAGTC 2 cut(s) 64, 163
PscI ACATGT 1 cut(s) 189
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
RseI CAYNNNNRTG 2 cut(s) 78, 483
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 2 cut(s) 39, 213
Sau3AI GATC 2 cut(s) 234, 472
ScaI AGTACT 1 cut(s) 448
SchI GAGTC 2 cut(s) 64, 164
SetI ASST 5 cut(s) 175, 283, 319, 373, 507
SfaNI GCATC 1 cut(s) 464
SmiMI CAYNNNNRTG 2 cut(s) 78, 483
SpeI ACTAGT 1 cut(s) 443
Sse9I AATT 5 cut(s) 13, 360, 409, 465, 498
SspMI CTAG 2 cut(s) 444, 483
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 237
TasI AATT 5 cut(s) 13, 360, 409, 465, 498
TatI WGTACW 1 cut(s) 446
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TseI GCWGC 2 cut(s) 38, 212
TspDTI ATGAA 1 cut(s) 510
XapI RAATTY 1 cut(s) 409
XceI RCATGY 1 cut(s) 193
XspI CTAG 2 cut(s) 444, 483
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.