Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Forward (+)

54394786 .. 54395643

Gene Structure 858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00323560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCAGAAGTTGGAACCTTGGGAAGAACTTACCATGTCAATCTGGTTAGACTCTATGGCTTCTGCTTCGCCCCAGAAATGAAAGCCCTCGTCTACGAGTACATGGAGAATGGTTCTCTTGACAAGGTATTGTTCAGTGACAATGGAGAAGTAGATTTAGAGAAGCTGCATGTTATTGCAGTCCAAACTGCAAAAGGGTTGGCTTATTTGCATGAGGAGTGTGAACAAAAAATCATTCACTATGATATTAAGCCCGAAAATGTGCTTCTGGATGAGAACTTGAATCCTAAGGTTGCCGATTTTGGACTCGCCAAGCTTTGCAATAGAGGGAGTAGTCGAATGCTCCTAACCAATTTCAGAGGGACAGCCGGATATGCAGCCCCAGAGATGTGGATGCCTTATCCTGTGACTCACAAATGTGATGTTTACAGTTTTGGTATTCTTCTCTTTGAGATTGTTGGAAGAAGAAGACACTGCGACGATAATTTGAGCAAGTCCCGAGACTGGCTACCCAAGTGGACATGGAACATGTTTGAGAAAAATGACTTAGCAGCACTATTATTGCGCTGTGGGATCGAAGAGAGAGACAGGGGAAAAGCAGAGAGGATGTTAATGATAGCTCTGTGGTGCATTCAGCATTCACCAGAAGCAAGACCACTCATGAGCAATGTAGTGCAAATGTTGGAGGGGCATAAAGAAATTACTCCACCTCCTTGCCCCTTTGAACATTTGCAATCTCCACAACTGAATTTCAGTCAAAATAGTGGAACAGATGACTACACTAGTACTTCGGCATCAGCCACAATTATTGATCCACACCCTAGTGTGGCACATGAAATTGAGCTAGTTGTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

285

Amino Acids

32.43

Weight (kDa)

5.49

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 228	9e-37	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 226	3.3e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AclWI	GGATC	2 cut(s)	581, 806
AcsI	RAATTY	1 cut(s)	748
AfaI	GTAC	2 cut(s)	101, 787
AfiI	CCNNNNNNNGG	2 cut(s)	504, 826
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	2 cut(s)	283, 725
AhlI	ACTAGT	1 cut(s)	782
AleI	CACNNNNGTG	2 cut(s)	417, 822
AluBI	AGCT	4 cut(s)	166, 316, 620, 844
AluI	AGCT	4 cut(s)	166, 316, 620, 844
Alw26I	GTCTC	2 cut(s)	495, 579
AlwI	GGATC	2 cut(s)	581, 806
Ama87I	CYCGRG	1 cut(s)	498
ApeKI	GCWGC	3 cut(s)	166, 377, 551
ApoI	RAATTY	1 cut(s)	748
AspLEI	GCGC	1 cut(s)	567
AsuHPI	GGTGA	1 cut(s)	633
AvaI	CYCGRG	1 cut(s)	498
AxyI	CCTNAGG	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	475
BbvI	GCAGC	3 cut(s)	153, 389, 563
BcoDI	GTCTC	2 cut(s)	495, 579
BcuI	ACTAGT	1 cut(s)	782
BfaI	CTAG	3 cut(s)	783, 822, 845
BisI	GCNGC	3 cut(s)	167, 378, 552
BlsI	GCNGC	3 cut(s)	168, 379, 553
BmcAI	AGTACT	1 cut(s)	787
BmeT110I	CYCGRG	1 cut(s)	498
BmiI	GGNNCC	1 cut(s)	16
BmsI	GCATC	2 cut(s)	384, 803
BpiI	GAAGAC	1 cut(s)	475
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	694, 724
Bsc4I	CCNNNNNNNGG	2 cut(s)	504, 826
Bse1I	ACTGG	1 cut(s)	509
Bse21I	CCTNAGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	673
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	3 cut(s)	277, 399, 612
BseLI	CCNNNNNNNGG	2 cut(s)	504, 826
BseMI	GCAATG	1 cut(s)	673
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	3 cut(s)	153, 389, 563
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	2 cut(s)	376, 481
BslI	CCNNNNNNNGG	2 cut(s)	504, 826
BsmAI	GTCTC	2 cut(s)	495, 579
BsmFI	GGGAC	2 cut(s)	376, 481
BsmI	GAATGC	3 cut(s)	345, 630, 637
BsoBI	CYCGRG	1 cut(s)	498
Bsp143I	GATC	2 cut(s)	573, 811
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	2 cut(s)	581, 806
BsrDI	GCAATG	1 cut(s)	673
BsrI	ACTGG	1 cut(s)	509
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	573, 811
BssT1I	CCWWGG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	1 cut(s)	573
BstDEI	CTNAG	2 cut(s)	288, 547
BstF5I	GGATG	3 cut(s)	277, 399, 612
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	2 cut(s)	576, 814
BstMAI	GTCTC	2 cut(s)	495, 579
BstMBI	GATC	2 cut(s)	573, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNSI	RCATGY	2 cut(s)	173, 532
BstV1I	GCAGC	3 cut(s)	153, 389, 563
BstV2I	GAAGAC	1 cut(s)	475
BstXI	CCANNNNNNTGG	1 cut(s)	390
Bsu36I	CCTNAGG	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	277, 399, 612
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	142, 472
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	1 cut(s)	567
Csp6I	GTAC	2 cut(s)	100, 786
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviAII	CATG	8 cut(s)	35, 103, 170, 212, 522, 529, 661, 833
CviQI	GTAC	2 cut(s)	100, 786
DdeI	CTNAG	2 cut(s)	288, 547
DpnI	GATC	2 cut(s)	575, 813
DpnII	GATC	2 cut(s)	573, 811
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Eco130I	CCWWGG	1 cut(s)	18
Eco81I	CCTNAGG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	8 cut(s)	38, 106, 173, 215, 525, 532, 664, 836
FaqI	GGGAC	2 cut(s)	376, 481
FatI	CATG	8 cut(s)	34, 102, 169, 211, 521, 528, 660, 832
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	167, 378, 552
FokI	GGATG	3 cut(s)	284, 406, 619
Fsp4HI	GCNGC	3 cut(s)	167, 378, 552
FspBI	CTAG	3 cut(s)	783, 822, 845
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	3 cut(s)	167, 378, 552
HapII	CCGG	1 cut(s)	369
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	8 cut(s)	38, 106, 173, 215, 525, 532, 664, 836
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	4 cut(s)	51, 283, 306, 409
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	1 cut(s)	633
Hpy166II	GTNNAC	4 cut(s)	94, 224, 427, 519
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	4 cut(s)	119, 269, 498, 661
Hpy8I	GTNNAC	4 cut(s)	94, 224, 427, 519
Hpy99I	CGWCG	1 cut(s)	482
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4V	TGCA	9 cut(s)	169, 179, 191, 211, 321, 377, 630, 676, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	2 cut(s)	288, 547
Hsp92II	CATG	8 cut(s)	38, 106, 173, 215, 525, 532, 664, 836
HspAI	GCGC	1 cut(s)	565
Kzo9I	GATC	2 cut(s)	573, 811
LmnI	GCTCC	1 cut(s)	348
LpnPI	CCDG	9 cut(s)	29, 87, 254, 382, 396, 417, 490, 574, 657
Lsp1109I	GCAGC	3 cut(s)	153, 389, 563
LweI	GCATC	2 cut(s)	384, 803
MaeI	CTAG	3 cut(s)	783, 822, 845
MaeIII	GTNAC	2 cut(s)	137, 406
MalI	GATC	2 cut(s)	575, 813
MboI	GATC	2 cut(s)	573, 811
MboII	GAAGA	6 cut(s)	36, 434, 474, 477, 480, 590
MluCI	AATT	6 cut(s)	352, 484, 699, 748, 804, 837
MlyI	GAGTC	3 cut(s)	45, 300, 403
MmeI	TCCRAC	2 cut(s)	439, 663
MnlI	CCTC	7 cut(s)	98, 208, 320, 353, 597, 679, 720
MseI	TTAA	2 cut(s)	249, 611
MslI	CAYNNNNRTG	2 cut(s)	417, 822
MspI	CCGG	1 cut(s)	369
Mva1269I	GAATGC	3 cut(s)	345, 630, 637
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	2 cut(s)	573, 811
NlaIII	CATG	8 cut(s)	38, 106, 173, 215, 525, 532, 664, 836
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	137, 406
NspI	RCATGY	2 cut(s)	173, 532
OliI	CACNNNNGTG	2 cut(s)	417, 822
PagI	TCATGA	1 cut(s)	660
PciI	ACATGT	1 cut(s)	528
PctI	GAATGC	3 cut(s)	345, 630, 637
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	3 cut(s)	168, 379, 553
PleI	GAGTC	3 cut(s)	45, 300, 403
PpsI	GAGTC	3 cut(s)	45, 300, 403
PscI	ACATGT	1 cut(s)	528
PspN4I	GGNNCC	1 cut(s)	16
RsaI	GTAC	2 cut(s)	101, 787
RsaNI	GTAC	2 cut(s)	100, 786
RseI	CAYNNNNRTG	2 cut(s)	417, 822
SaqAI	TTAA	2 cut(s)	249, 611
SatI	GCNGC	3 cut(s)	167, 378, 552
Sau3AI	GATC	2 cut(s)	573, 811
ScaI	AGTACT	1 cut(s)	787
SchI	GAGTC	3 cut(s)	45, 300, 403
SetI	ASST	8 cut(s)	20, 129, 168, 294, 318, 622, 712, 846
SfaNI	GCATC	2 cut(s)	384, 803
SmiMI	CAYNNNNRTG	2 cut(s)	417, 822
SpeI	ACTAGT	1 cut(s)	782
Sse9I	AATT	6 cut(s)	352, 484, 699, 748, 804, 837
SspMI	CTAG	3 cut(s)	783, 822, 845
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	431
TaqI	TCGA	3 cut(s)	337, 576, 852
TasI	AATT	6 cut(s)	352, 484, 699, 748, 804, 837
TatI	WGTACW	2 cut(s)	99, 785
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	2 cut(s)	249, 611
Tru9I	TTAA	2 cut(s)	249, 611
TscAI	CASTG	2 cut(s)	142, 479
TseFI	GTSAC	2 cut(s)	137, 406
TseI	GCWGC	3 cut(s)	166, 377, 551
Tsp45I	GTSAC	2 cut(s)	137, 406
TspDTI	ATGAA	2 cut(s)	95, 849
TspRI	CASTG	2 cut(s)	142, 479
XapI	RAATTY	1 cut(s)	748
XceI	RCATGY	2 cut(s)	173, 532
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	3 cut(s)	783, 822, 845
ZrmI	AGTACT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.