Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Reverse (-)

10119731 .. 10122952

Gene Structure 3222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0061700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGTTTTTCTTACTTCAACCTCCGATACAGCAAGGCACAACATGTAATTTGCAGAATTCTATTGATTGCTCCCGGAGACGAGGACGCGATTAAGTGCAAAGAGGCACTTTCCATGATTCGATCTTGCAAAAATCGTGCTCTCTATTTCAGCGTCTTCAAGATAATGGCACCTTCGACACGAAAAGCTTCCTCTCAAGCACTAGCAATGGCAAAAAGAATGAGGGAAATCCAGCTGAGAAGGACAAGCAAATCTACTAATACTAAGCAATCAAATGGATCATCATCAAGGGGAACAATGGCTTCAAAAAAAACTGCATCAAAGTTGTCATTGAAACGACCAACTGGTCAACAGTCTCTTTTCTTGCGCGGGCGTGCCAGCACCGTTCGGGTGCGGTCGTCGGGGGTGTCCCTTGACCTGACTTCTATCAAGCGATTATTGAGCAGAGCGAAATCACCGGGAAGTATTGAGATCTTGCTAAAGCGTGACTTTAGCTTGGCTGGGTTGCTAGGGCGTTACCCTTGCTTGGCTGGTTCTGTAACCGTTGTGGTCGCGGCACTACCGTCGGCTCCCGAGGAGACTAGGACCGAAGCACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

199

Amino Acids

21.79

Weight (kDa)

11.12

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	345
AccB1I	GGYRCC	1 cut(s)	169
AccII	CGCG	3 cut(s)	89, 369, 554
AciI	CCGC	3 cut(s)	369, 394, 554
AclWI	GGATC	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	526
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	4 cut(s)	19, 160, 306, 334
AluBI	AGCT	3 cut(s)	188, 235, 495
AluI	AGCT	3 cut(s)	188, 235, 495
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	3 cut(s)	72, 360, 572
AlwI	GGATC	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	572
ApoI	RAATTY	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	585
AsuC2I	CCSGG	2 cut(s)	75, 459
AsuHPI	GGTGA	1 cut(s)	447
AvaI	CYCGRG	1 cut(s)	572
AvaII	GGWCC	1 cut(s)	585
BanI	GGYRCC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	142
BcgI	CGANNNNNNTGC	2 cut(s)	546, 580
BcnI	CCSGG	2 cut(s)	75, 459
BcoDI	GTCTC	3 cut(s)	72, 360, 572
BfaI	CTAG	3 cut(s)	203, 509, 582
BglII	AGATCT	1 cut(s)	471
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	2 cut(s)	75, 459
Bme18I	GGWCC	1 cut(s)	585
BmeT110I	CYCGRG	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	585
BmiI	GGNNCC	2 cut(s)	171, 570
BmrFI	CCNGG	2 cut(s)	75, 459
BmsI	GCATC	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	180
BpuMI	CCSGG	2 cut(s)	75, 459
BsaBI	GATNNNNATC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse1I	ACTGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	213
Bse8I	GATNNNNATC	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	573
BseJI	GATNNNNATC	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	590
BseYI	CCCAGC	1 cut(s)	500
Bsh1236I	CGCG	3 cut(s)	89, 369, 554
Bsh1285I	CGRYCG	1 cut(s)	398
BshNI	GGYRCC	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	572
BsiSI	CCGG	2 cut(s)	75, 458
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	3 cut(s)	72, 360, 572
BsmBI	CGTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	394
BsoBI	CYCGRG	1 cut(s)	572
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	122, 278, 471
BspACI	CCGC	3 cut(s)	369, 394, 554
BspCNI	CTCAG	1 cut(s)	228
BspFNI	CGCG	3 cut(s)	89, 369, 554
BspLI	GGNNCC	2 cut(s)	171, 570
BspPI	GGATC	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	3 cut(s)	122, 278, 471
Bst4CI	ACNGT	4 cut(s)	354, 385, 544, 564
BstC8I	GCNNGC	3 cut(s)	371, 375, 379
BstDEI	CTNAG	2 cut(s)	236, 264
BstFNI	CGCG	3 cut(s)	89, 369, 554
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	3 cut(s)	125, 281, 474
BstMAI	GTCTC	3 cut(s)	72, 360, 572
BstMBI	GATC	3 cut(s)	122, 278, 471
BstMCI	CGRYCG	1 cut(s)	398
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	73, 457
BstUI	CGCG	3 cut(s)	89, 369, 554
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
Cac8I	GCNNGC	3 cut(s)	371, 375, 379
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	585
CseI	GACGC	2 cut(s)	95, 142
CviAII	CATG	2 cut(s)	44, 115
CviJI	RGCY	7 cut(s)	188, 235, 302, 495, 500, 530, 569
CviKI_1	RGCY	7 cut(s)	188, 235, 302, 495, 500, 530, 569
DdeI	CTNAG	2 cut(s)	236, 264
DpnI	GATC	3 cut(s)	124, 280, 473
DpnII	GATC	3 cut(s)	122, 278, 471
DrdI	GACNNNNNNGTC	1 cut(s)	345
DseDI	GACNNNNNNGTC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	572
EcoRI	GAATTC	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	2 cut(s)	47, 118
FaiI	YATR	2 cut(s)	45, 116
FalI	AAGNNNNNCTT	4 cut(s)	93, 125, 473, 505
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	2 cut(s)	43, 114
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	1 cut(s)	555
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	3 cut(s)	203, 509, 582
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	1 cut(s)	555
GsaI	CCCAGC	1 cut(s)	504
HapII	CCGG	2 cut(s)	75, 458
HgaI	GACGC	2 cut(s)	95, 142
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	2 cut(s)	47, 118
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	350
HindII	GTYRAC	1 cut(s)	350
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	2 cut(s)	75, 458
HphI	GGTGA	1 cut(s)	447
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	2 cut(s)	160, 572
Hpy8I	GTNNAC	1 cut(s)	350
Hpy99I	CGWCG	2 cut(s)	403, 568
HpyAV	CCTTC	2 cut(s)	183, 234
HpyCH4III	ACNGT	4 cut(s)	354, 385, 544, 564
HpyCH4IV	ACGT	1 cut(s)	595
HpyCH4V	TGCA	4 cut(s)	54, 99, 129, 317
HpyF3I	CTNAG	2 cut(s)	236, 264
HpySE526I	ACGT	1 cut(s)	595
Hsp92II	CATG	2 cut(s)	47, 118
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	122, 278, 471
LmnI	GCTCC	2 cut(s)	76, 574
LpnPI	CCDG	8 cut(s)	88, 245, 330, 391, 431, 471, 486, 516
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	3 cut(s)	203, 509, 582
MaeII	ACGT	1 cut(s)	595
MaeIII	GTNAC	3 cut(s)	485, 515, 538
MalI	GATC	3 cut(s)	124, 280, 473
MboI	GATC	3 cut(s)	122, 278, 471
MboII	GAAGA	1 cut(s)	148
MflI	RGATCY	1 cut(s)	471
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	2 cut(s)	48, 57
MnlI	CCTC	6 cut(s)	32, 76, 97, 202, 216, 568
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	235
MspI	CCGG	2 cut(s)	75, 458
MspR9I	CCNGG	2 cut(s)	75, 459
MvnI	CGCG	3 cut(s)	89, 369, 554
NciI	CCSGG	2 cut(s)	75, 459
NdeII	GATC	3 cut(s)	122, 278, 471
NlaIII	CATG	2 cut(s)	47, 118
NlaIV	GGNNCC	2 cut(s)	171, 570
NmuCI	GTSAC	1 cut(s)	485
NspI	RCATGY	1 cut(s)	47
PciI	ACATGT	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	118
PfoI	TCCNGGA	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	556
PscI	ACATGT	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	171, 570
PspPI	GGNCC	1 cut(s)	585
PsuI	RGATCY	1 cut(s)	471
PvuII	CAGCTG	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	3 cut(s)	122, 278, 471
Sau96I	GGNCC	1 cut(s)	585
ScrFI	CCNGG	2 cut(s)	75, 459
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	7 cut(s)	24, 175, 190, 237, 420, 497, 598
SfaNI	GCATC	1 cut(s)	326
SinI	GGWCC	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	2 cut(s)	48, 57
SsiI	CCGC	3 cut(s)	369, 394, 554
SspMI	CTAG	3 cut(s)	203, 509, 582
StyD4I	CCNGG	2 cut(s)	73, 457
TaaI	ACNGT	4 cut(s)	354, 385, 544, 564
TaiI	ACGT	1 cut(s)	598
TaqI	TCGA	2 cut(s)	121, 176
TasI	AATT	2 cut(s)	48, 57
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	585
XapI	RAATTY	1 cut(s)	57
XceI	RCATGY	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	3 cut(s)	203, 509, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.