Rmu_sc0003315.1_g000016

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003315.1
OG0003270
Physical Location & Seq
Forward (+)
55904 .. 58124
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003315.1_g000016.1.cds

Sequence Viewer

Length: 1278 bp
atgtcgatggctgcaaggctaaggctgatgttctcgggcctagatcagtgggcttctgggccggaggctttctttttcttctgggtcgaaggatttcctgccggtccggtcactttttggccgatttcccggaaggtgattccgattcctggagcctggggtcaggtttctactgtggtgctgatcagtgttgttactgccattatatgtgccattattaactgcgtgaaaaagtttggaagttctattccaattttggccaagatattgagtggtaacaatactgacaacgattccagcaacaaagtagcagtggacttgagacgtaatcaatttccagtagcttttgattccaaggccaagtttccgacaatcaaagggtttaggtggtttggagtagtatataaagggcttctcgaaaatggagtacaagtggctgttaaggtccttacgaacaacaatagggctaagatagttgaagagcagtttatagcaaaagtcggagccttgggaagaacttaccatgtcaatttggttagactctatggcttctgcttctcctccgaaatgaaagcccttgtctacgagtacatggagaatggttctcttgacaagttattgttcagtgacaatggagaagtagatttagagaagctgcacgttattgcagtccaaactgcaaaagggttggcttatttcatgaggagttgtgaacaaaaaatcattcactatgatattaagcccgaaaatgtacttctggatgagaacttgaatcctaaggttgcggattttggactcgccaagctttgcaatagagggagtagtcgaatgctcccaaccaatttcagagggacaaccagatatgcagtcccagagatgtggaagccttatcctgtgactcacaaatgtgatgtttaccgttttggtattcttctctttgagattgttggaagaagaagacactgcgacgataatttgagcgagtccccagactggctacctaagtggacatgtaacatttttgagaaaaatgacttagcagcactactattgcgctgtgggaacgaagagagagacatgggaaaagcagagcggatgttaatgatagctatgtggtgcattcagcattcaccagaagtaagacctctcatgagcaatgtagtgcaactgtcagaggggcataaagaaattactccacctcctttccgctttgagcatttgaaatctccgcaactaaatttcagtcaaaattgtggaacagatgacaacatgcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

425

Amino Acids

48.14

Weight (kDa)

8.76

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1093
AccI GTMKAC 1 cut(s) 582
AciI CCGC 4 cut(s) 785, 1093, 1207, 1229
AcoI YGGCCR 2 cut(s) 119, 258
AcsI RAATTY 1 cut(s) 1237
AfaI GTAC 3 cut(s) 429, 590, 753
AfiI CCNNNNNNNGG 2 cut(s) 149, 993
AflIII ACRYGT 1 cut(s) 1010
AgsI TTSAA 3 cut(s) 479, 772, 1222
AjnI CCWGG 2 cut(s) 148, 155
AleI CACNNNNGTG 1 cut(s) 906
AluBI AGCT 4 cut(s) 344, 655, 805, 1109
AluI AGCT 4 cut(s) 344, 655, 805, 1109
Alw26I GTCTC 2 cut(s) 316, 1068
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 5 cut(s) 37, 59, 119, 258, 357
ApeKI GCWGC 3 cut(s) 11, 655, 1040
ApoI RAATTY 1 cut(s) 1237
Asp700I GAANNNNTTC 1 cut(s) 93
AspLEI GCGC 1 cut(s) 1056
AspS9I GGNCC 4 cut(s) 37, 59, 104, 445
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 148, 1122
AvaI CYCGRG 1 cut(s) 34
AvaII GGWCC 2 cut(s) 104, 445
AxyI CCTNAGG 1 cut(s) 777
BalI TGGCCA 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 964
BbvI GCAGC 2 cut(s) 642, 1052
BciT130I CCWGG 2 cut(s) 150, 157
BclI TGATCA 1 cut(s) 183
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 316, 1068
BfaI CTAG 2 cut(s) 41, 1276
BisI GCNGC 3 cut(s) 12, 656, 1041
BlsI GCNGC 3 cut(s) 13, 657, 1042
Bme1390I CCNGG 3 cut(s) 130, 150, 157
Bme18I GGWCC 2 cut(s) 104, 445
BmeT110I CYCGRG 1 cut(s) 34
BmgT120I GGNCC 4 cut(s) 37, 59, 104, 445
BmiI GGNNCC 2 cut(s) 154, 505
BmrFI CCNGG 3 cut(s) 130, 150, 157
BpiI GAAGAC 1 cut(s) 964
BpmI CTGGAG 1 cut(s) 171
Bpu10I CCTNAGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 130
BsaJI CCNNGG 3 cut(s) 156, 354, 507
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 1183, 1213
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 993
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 338, 998
Bse21I CCTNAGG 1 cut(s) 777
Bse3DI GCAATG 1 cut(s) 1162
BseBI CCWGG 2 cut(s) 150, 157
BseDI CCNNGG 3 cut(s) 156, 354, 507
BseGI GGATG 2 cut(s) 766, 1101
BseLI CCNNNNNNNGG 2 cut(s) 149, 993
BseMI GCAATG 1 cut(s) 1162
BseNI ACTGG 2 cut(s) 338, 998
BseRI GAGGAG 2 cut(s) 550, 718
BseXI GCAGC 2 cut(s) 642, 1052
BsgI GTGCAG 1 cut(s) 641
BshFI GGCC 5 cut(s) 39, 61, 121, 260, 359
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 4 cut(s) 62, 102, 107, 130
BslFI GGGAC 3 cut(s) 854, 865, 970
BslI CCNNNNNNNGG 2 cut(s) 149, 993
BsmAI GTCTC 2 cut(s) 316, 1068
BsmBI CGTCTC 1 cut(s) 316
BsmFI GGGAC 3 cut(s) 854, 865, 970
BsmI GAATGC 3 cut(s) 834, 1119, 1126
BsnI GGCC 5 cut(s) 39, 61, 121, 260, 359
BsoBI CYCGRG 1 cut(s) 34
Bsp143I GATC 2 cut(s) 43, 183
BspACI CCGC 4 cut(s) 785, 1093, 1207, 1229
BspANI GGCC 5 cut(s) 39, 61, 121, 260, 359
BspHI TCATGA 2 cut(s) 699, 1149
BspLI GGNNCC 2 cut(s) 154, 505
BspQI GCTCTTC 1 cut(s) 474
BsrBI CCGCTC 1 cut(s) 1093
BsrDI GCAATG 1 cut(s) 1162
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 2 cut(s) 338, 998
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 3 cut(s) 156, 354, 507
BssMI GATC 2 cut(s) 43, 183
BssT1I CCWWGG 2 cut(s) 354, 507
Bst2UI CCWGG 2 cut(s) 150, 157
Bst4CI ACNGT 3 cut(s) 175, 920, 1170
Bst6I CTCTTC 2 cut(s) 474, 1062
BstDEI CTNAG 5 cut(s) 20, 468, 777, 1002, 1036
BstF5I GGATG 2 cut(s) 766, 1101
BstHHI GCGC 1 cut(s) 1056
BstKTI GATC 2 cut(s) 46, 186
BstMAI GTCTC 2 cut(s) 316, 1068
BstMBI GATC 2 cut(s) 43, 183
BstNI CCWGG 2 cut(s) 150, 157
BstNSI RCATGY 2 cut(s) 1014, 1273
BstSCI CCNGG 3 cut(s) 128, 148, 155
BstV1I GCAGC 2 cut(s) 642, 1052
BstV2I GAAGAC 1 cut(s) 964
BstXI CCANNNNNNTGG 1 cut(s) 879
Bsu36I CCTNAGG 1 cut(s) 777
BsuRI GGCC 5 cut(s) 39, 61, 121, 260, 359
BtsCI GGATG 2 cut(s) 766, 1101
BtsI GCAGTG 2 cut(s) 318, 961
BtsIMutI CAGTG 5 cut(s) 53, 193, 318, 631, 961
CciI TCATGA 2 cut(s) 699, 1149
CfoI GCGC 1 cut(s) 1056
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 4 cut(s) 37, 59, 104, 445
CpoI CGGWCCG 1 cut(s) 104
Csp6I GTAC 3 cut(s) 428, 589, 752
CspI CGGWCCG 1 cut(s) 104
CviAII CATG 7 cut(s) 524, 592, 700, 1011, 1078, 1150, 1270
CviQI GTAC 3 cut(s) 428, 589, 752
DdeI CTNAG 5 cut(s) 20, 468, 777, 1002, 1036
DpnI GATC 2 cut(s) 45, 185
DpnII GATC 2 cut(s) 43, 183
EaeI YGGCCR 2 cut(s) 119, 258
Eam1104I CTCTTC 2 cut(s) 474, 1062
EarI CTCTTC 2 cut(s) 474, 1062
Eco130I CCWWGG 2 cut(s) 354, 507
Eco47I GGWCC 2 cut(s) 104, 445
Eco81I CCTNAGG 1 cut(s) 777
Eco88I CYCGRG 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 445
EcoRII CCWGG 2 cut(s) 148, 155
EcoT14I CCWWGG 2 cut(s) 354, 507
ErhI CCWWGG 2 cut(s) 354, 507
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 7 cut(s) 527, 595, 703, 1014, 1081, 1153, 1273
FaqI GGGAC 3 cut(s) 854, 865, 970
FatI CATG 7 cut(s) 523, 591, 699, 1010, 1077, 1149, 1269
FbaI TGATCA 1 cut(s) 183
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 3 cut(s) 12, 656, 1041
FokI GGATG 2 cut(s) 773, 1108
Fsp4HI GCNGC 3 cut(s) 12, 656, 1041
FspBI CTAG 2 cut(s) 41, 1276
GlaI GCGC 1 cut(s) 1055
GluI GCNGC 3 cut(s) 12, 656, 1041
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 5 cut(s) 39, 61, 121, 260, 359
HapII CCGG 4 cut(s) 62, 102, 107, 130
HhaI GCGC 1 cut(s) 1056
Hin1II CATG 7 cut(s) 527, 595, 703, 1014, 1081, 1153, 1273
Hin6I GCGC 1 cut(s) 1054
HinP1I GCGC 1 cut(s) 1054
HindIII AAGCTT 1 cut(s) 803
HinfI GANTC 9 cut(s) 139, 145, 293, 350, 540, 772, 795, 898, 983
HpaII CCGG 4 cut(s) 62, 102, 107, 130
HphI GGTGA 2 cut(s) 148, 1122
Hpy166II GTNNAC 5 cut(s) 316, 583, 713, 916, 1008
Hpy188I TCNGA 6 cut(s) 144, 369, 503, 565, 848, 1174
Hpy188III TCNNGA 5 cut(s) 416, 608, 700, 758, 1150
Hpy8I GTNNAC 5 cut(s) 316, 583, 713, 916, 1008
Hpy99I CGWCG 1 cut(s) 971
HpyAV CCTTC 2 cut(s) 83, 127
HpyCH4III ACNGT 3 cut(s) 175, 920, 1170
HpyCH4IV ACGT 2 cut(s) 325, 660
HpyCH4V TGCA 9 cut(s) 14, 658, 668, 680, 810, 866, 1119, 1165, 1273
HpyF3I CTNAG 5 cut(s) 20, 468, 777, 1002, 1036
HpySE526I ACGT 2 cut(s) 325, 660
Hsp92II CATG 7 cut(s) 527, 595, 703, 1014, 1081, 1153, 1273
HspAI GCGC 1 cut(s) 1054
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 2 cut(s) 43, 183
LguI GCTCTTC 1 cut(s) 474
LmnI GCTCC 3 cut(s) 152, 503, 837
Lsp1109I GCAGC 2 cut(s) 642, 1052
MaeI CTAG 2 cut(s) 41, 1276
MaeII ACGT 2 cut(s) 325, 660
MaeIII GTNAC 6 cut(s) 109, 193, 275, 626, 895, 1013
MalI GATC 2 cut(s) 45, 185
MbiI CCGCTC 1 cut(s) 1093
MboI GATC 2 cut(s) 43, 183
MboII GAAGA 8 cut(s) 70, 491, 525, 923, 963, 966, 969, 1079
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 8 cut(s) 252, 332, 529, 841, 973, 1188, 1237, 1249
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 4 cut(s) 534, 789, 892, 992
MmeI TCCRAC 3 cut(s) 392, 481, 928
MnlI CCTC 8 cut(s) 58, 571, 696, 809, 842, 1155, 1168, 1209
Mox20I TGGCCA 1 cut(s) 260
MroXI GAANNNNTTC 1 cut(s) 93
MscI TGGCCA 1 cut(s) 260
MseI TTAA 4 cut(s) 219, 441, 738, 1100
MslI CAYNNNNRTG 1 cut(s) 906
Msp20I TGGCCA 1 cut(s) 260
MspI CCGG 4 cut(s) 62, 102, 107, 130
MspR9I CCNGG 3 cut(s) 130, 150, 157
Mva1269I GAATGC 3 cut(s) 834, 1119, 1126
MvaI CCWGG 2 cut(s) 150, 157
NciI CCSGG 1 cut(s) 130
NdeII GATC 2 cut(s) 43, 183
NlaIII CATG 7 cut(s) 527, 595, 703, 1014, 1081, 1153, 1273
NlaIV GGNNCC 2 cut(s) 154, 505
NmuCI GTSAC 3 cut(s) 109, 626, 895
NspI RCATGY 2 cut(s) 1014, 1273
OliI CACNNNNGTG 1 cut(s) 906
PagI TCATGA 2 cut(s) 699, 1149
PciI ACATGT 1 cut(s) 1010
PciSI GCTCTTC 1 cut(s) 474
PctI GAATGC 3 cut(s) 834, 1119, 1126
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 5 cut(s) 139, 145, 293, 350, 772
PfoI TCCNGGA 2 cut(s) 128, 148
PkrI GCNGC 3 cut(s) 13, 657, 1042
PleI GAGTC 4 cut(s) 534, 789, 892, 991
PpsI GAGTC 4 cut(s) 534, 789, 892, 991
PpuMI RGGWCCY 1 cut(s) 445
PscI ACATGT 1 cut(s) 1010
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 2 cut(s) 148, 155
PspGI CCWGG 2 cut(s) 148, 155
PspN4I GGNNCC 2 cut(s) 154, 505
PspPI GGNCC 4 cut(s) 37, 59, 104, 445
PspPPI RGGWCCY 1 cut(s) 445
RsaI GTAC 3 cut(s) 429, 590, 753
RsaNI GTAC 3 cut(s) 428, 589, 752
RseI CAYNNNNRTG 1 cut(s) 906
Rsr2I CGGWCCG 1 cut(s) 104
RsrII CGGWCCG 1 cut(s) 104
SapI GCTCTTC 1 cut(s) 474
SaqAI TTAA 4 cut(s) 219, 441, 738, 1100
SatI GCNGC 3 cut(s) 12, 656, 1041
Sau3AI GATC 2 cut(s) 43, 183
Sau96I GGNCC 4 cut(s) 37, 59, 104, 445
SchI GAGTC 4 cut(s) 534, 789, 892, 992
ScrFI CCNGG 3 cut(s) 130, 150, 157
SinI GGWCC 2 cut(s) 104, 445
SmiMI CAYNNNNRTG 1 cut(s) 906
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 8 cut(s) 252, 332, 529, 841, 973, 1188, 1237, 1249
SsiI CCGC 4 cut(s) 785, 1093, 1207, 1229
SspMI CTAG 2 cut(s) 41, 1276
StyD4I CCNGG 3 cut(s) 128, 148, 155
StyI CCWWGG 2 cut(s) 354, 507
TaaI ACNGT 3 cut(s) 175, 920, 1170
TaiI ACGT 2 cut(s) 328, 663
TaqI TCGA 4 cut(s) 5, 87, 417, 826
TasI AATT 8 cut(s) 252, 332, 529, 841, 973, 1188, 1237, 1249
TatI WGTACW 3 cut(s) 427, 588, 751
TfiI GAWTC 5 cut(s) 139, 145, 293, 350, 772
Tru1I TTAA 4 cut(s) 219, 441, 738, 1100
Tru9I TTAA 4 cut(s) 219, 441, 738, 1100
TscAI CASTG 5 cut(s) 53, 193, 318, 631, 968
TseFI GTSAC 3 cut(s) 109, 626, 895
TseI GCWGC 3 cut(s) 11, 655, 1040
Tsp45I GTSAC 3 cut(s) 109, 626, 895
TspDTI ATGAA 2 cut(s) 584, 688
TspRI CASTG 5 cut(s) 53, 193, 318, 631, 968
VpaK11BI GGWCC 2 cut(s) 104, 445
XapI RAATTY 1 cut(s) 1237
XceI RCATGY 2 cut(s) 1014, 1273
XmiI GTMKAC 1 cut(s) 582
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 2 cut(s) 41, 1276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.