Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Reverse (-)

16121096 .. 16123549

Gene Structure 2454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG076900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGAGCACCGAAGATGACTTCTTCAATAACAGTGTCAAAGATTTCAATTCCGTATTCAAAACGGCCGTTGTTGCTTCTGTTGTTTCTTCTGTGGTGATGATCATTGCTGTTACAGCCATTGTATATGCCATTATTAACTGCTTGAAAAATTATGGAAATCCTATTGCAAAATATGCCCGGGTAACAAGTAGTAATGATACCGACAAGGATTCCAACAACGTAGAAGTGGACTTAAGAAGTGATCAATTTCCAGTAGCTTTTGGTTCCCAGGCTGAGTTTCCGACAATCAAAGAGTTCCTTAGCAACATGGCAAGAGAGAAGCCTATAACTTACTCAGCAAAGCAAATTGCAGAATTCACACATGACTATAGCCACTCCAACATTTTAGGTTCAGGTGCTTTTGGAATAGTATATAGAGGGCTTCTTAAAAATGGAGTACAAGTGGCTGTCAAGGTTCTTACCAACAACCACAGAGATAAAATAGTTGAAGAGCAGTTTATGGCAGAAGTTGGAACCTTGGGAAGAACTTACCATGTCAATCTGGTTAGACTCTACGGCTTCTGCTTCGCCTCTGAAATGAAAGCGCTTGTCTACGAGTACATGGAGAATGGTTCTCTTGACAAGTTATTGTTCGGTGACAATGGAGAAGCAGATTTAGAGAAGCTTCATGAAATTGCAGTCCAAACTGCAAAAGGTTTGGCTTATTTACATGAGGAGTGTGAACAAAAAATCATTCACTATGATATTAAACCCGAAAACGTGCTTCTTGATGAGAACCTTAATCCCAAGGTTGCTGATTTTGGACTCGCCAAGCTTTGCAATAGAGGGAATAGTGAAATGCTCCTAACCAATGTCAGAGGAACAGTCGGATATGCAGCCCCAGAGATGTGGAAGCCTTATCATGTGACTCACAAATGTGATGTTTACAGTTTTGGTATTCTTCTCTTTGAGATTGTTGGAAAAAGAAGACACTACGATGATAATGTGAGCGAGTCCCGGGACTGGCTACCTAAGTGGACATGGAACATGTTTGAGAAAAATAACTTAGCAGCACTATTATTGCGCTGTGGGATCGAGGAGAGAGATAGGGGAAAAGCTGAGAGGATGTTACTGGTAGCTTTGTGGTGCATTCAGCATTCACCAGAAGCGAGACCTCTCATGAGCAATGTAGTGCAAATGTTGGAGGGGCATAGAGAAATTAGTCCACCACCTTGCCCCTTTGAACATTTGCAATCTCCGCAACTAAATTTCAGTCAAAATAGTGGAACAGATGACGACACTTGTACTTCTGCATCAGGCACACTCACTGATCCACGCCGCATTTTAAGTGCTGCGCCCGAAATTGAGCTCATTGTTGTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

454

Amino Acids

51.05

Weight (kDa)

5.45

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	123 - 392	5e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	127 - 394	7.3e-49	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	591
AciI	CCGC	2 cut(s)	1238, 1318
AclWI	GGATC	2 cut(s)	1079, 1304
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	353, 1246
AfaI	GTAC	3 cut(s)	438, 599, 1285
AfeI	AGCGCT	1 cut(s)	585
AfiI	CCNNNNNNNGG	1 cut(s)	1002
AflII	CTTAAG	1 cut(s)	232
AflIII	ACRYGT	1 cut(s)	1026
AgsI	TTSAA	6 cut(s)	25, 46, 58, 145, 488, 1223
AjnI	CCWGG	1 cut(s)	267
AleI	CACNNNNGTG	1 cut(s)	915
AluBI	AGCT	6 cut(s)	257, 664, 814, 1097, 1118, 1348
AluI	AGCT	6 cut(s)	257, 664, 814, 1097, 1118, 1348
Alw21I	GWGCWC	2 cut(s)	8, 1350
Alw26I	GTCTC	1 cut(s)	1144
AlwI	GGATC	2 cut(s)	1079, 1304
Ama87I	CYCGRG	2 cut(s)	177, 996
Aor51HI	AGCGCT	1 cut(s)	585
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	3 cut(s)	875, 1049, 1331
ApoI	RAATTY	2 cut(s)	353, 1246
AspLEI	GCGC	3 cut(s)	586, 1065, 1336
AsuC2I	CCSGG	4 cut(s)	178, 179, 997, 998
AsuHPI	GGTGA	3 cut(s)	106, 647, 1131
AvaI	CYCGRG	2 cut(s)	177, 996
BanII	GRGCYC	1 cut(s)	1350
BbsI	GAAGAC	1 cut(s)	973
Bbv12I	GWGCWC	2 cut(s)	8, 1350
BbvI	GCAGC	3 cut(s)	887, 1061, 1318
BceAI	ACGGC	3 cut(s)	50, 78, 571
BciT130I	CCWGG	1 cut(s)	269
BclI	TGATCA	2 cut(s)	99, 241
BcnI	CCSGG	4 cut(s)	178, 179, 997, 998
BcoDI	GTCTC	1 cut(s)	1144
BfmI	CTRYAG	1 cut(s)	367
BfoI	RGCGCY	1 cut(s)	587
BfrI	CTTAAG	1 cut(s)	232
BisI	GCNGC	4 cut(s)	876, 1050, 1318, 1332
BlsI	GCNGC	4 cut(s)	877, 1051, 1319, 1333
Bme1390I	CCNGG	5 cut(s)	178, 179, 269, 997, 998
BmeT110I	CYCGRG	2 cut(s)	177, 996
BmiI	GGNNCC	2 cut(s)	265, 514
BmrFI	CCNGG	5 cut(s)	178, 179, 269, 997, 998
BmsI	GCATC	1 cut(s)	1301
BpiI	GAAGAC	1 cut(s)	973
Bpu10I	CCTNAGC	1 cut(s)	299
BpuMI	CCSGG	4 cut(s)	178, 179, 997, 998
BsaI	GGTCTC	1 cut(s)	1144
BsaJI	CCNNGG	5 cut(s)	177, 267, 516, 786, 996
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	1002
Bse1I	ACTGG	3 cut(s)	251, 1007, 1116
Bse3DI	GCAATG	2 cut(s)	102, 1171
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	5 cut(s)	177, 267, 516, 786, 996
BseGI	GGATG	1 cut(s)	1110
BseLI	CCNNNNNNNGG	1 cut(s)	1002
BseMI	GCAATG	2 cut(s)	102, 1171
BseMII	CTCAG	3 cut(s)	264, 348, 1089
BseNI	ACTGG	3 cut(s)	251, 1007, 1116
BseRI	GAGGAG	2 cut(s)	728, 1091
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	3 cut(s)	887, 1061, 1318
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	8, 1350
BsiHKCI	CYCGRG	2 cut(s)	177, 996
BsiSI	CCGG	2 cut(s)	178, 997
BslFI	GGGAC	2 cut(s)	979, 1013
BslI	CCNNNNNNNGG	1 cut(s)	1002
BsmAI	GTCTC	1 cut(s)	1144
BsmFI	GGGAC	2 cut(s)	979, 1013
BsmI	GAATGC	2 cut(s)	1128, 1135
BsnI	GGCC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	1144
BsoBI	CYCGRG	2 cut(s)	177, 996
Bsp1286I	GDGCHC	2 cut(s)	8, 1350
Bsp143I	GATC	4 cut(s)	99, 241, 1071, 1309
BspACI	CCGC	2 cut(s)	1238, 1318
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	3 cut(s)	265, 347, 1090
BspHI	TCATGA	2 cut(s)	667, 1158
BspLI	GGNNCC	2 cut(s)	265, 514
BspPI	GGATC	2 cut(s)	1079, 1304
BspQI	GCTCTTC	1 cut(s)	483
BspTI	CTTAAG	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	1144
BsrDI	GCAATG	2 cut(s)	102, 1171
BsrI	ACTGG	3 cut(s)	251, 1007, 1116
BssECI	CCNNGG	5 cut(s)	177, 267, 516, 786, 996
BssMI	GATC	4 cut(s)	99, 241, 1071, 1309
BssT1I	CCWWGG	2 cut(s)	516, 786
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	3 cut(s)	32, 865, 929
Bst6I	CTCTTC	1 cut(s)	483
BstAFI	CTTAAG	1 cut(s)	232
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstDEI	CTNAG	6 cut(s)	273, 299, 334, 1011, 1045, 1098
BstF5I	GGATG	1 cut(s)	1110
BstH2I	RGCGCY	1 cut(s)	587
BstHHI	GCGC	3 cut(s)	586, 1065, 1336
BstKTI	GATC	4 cut(s)	102, 244, 1074, 1312
BstMAI	GTCTC	1 cut(s)	1144
BstMBI	GATC	4 cut(s)	99, 241, 1071, 1309
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 113, 173, 1237
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	1030
BstSCI	CCNGG	5 cut(s)	176, 177, 267, 995, 996
BstSFI	CTRYAG	1 cut(s)	367
BstV1I	GCAGC	3 cut(s)	887, 1061, 1318
BstV2I	GAAGAC	1 cut(s)	973
BstXI	CCANNNNNNTGG	1 cut(s)	888
BstZI	CGGCCG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	1110
BtsIMutI	CAGTG	2 cut(s)	37, 1305
CciI	TCATGA	2 cut(s)	667, 1158
CfoI	GCGC	3 cut(s)	586, 1065, 1336
Cfr9I	CCCGGG	2 cut(s)	177, 996
Csp6I	GTAC	3 cut(s)	437, 598, 1284
CviQI	GTAC	3 cut(s)	437, 598, 1284
DdeI	CTNAG	6 cut(s)	273, 299, 334, 1011, 1045, 1098
DpnI	GATC	4 cut(s)	101, 243, 1073, 1311
DpnII	GATC	4 cut(s)	99, 241, 1071, 1309
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Ecl136II	GAGCTC	1 cut(s)	1348
EclXI	CGGCCG	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	516, 786
Eco24I	GRGCYC	1 cut(s)	1350
Eco31I	GGTCTC	1 cut(s)	1144
Eco47III	AGCGCT	1 cut(s)	585
Eco52I	CGGCCG	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	1348
Eco88I	CYCGRG	2 cut(s)	177, 996
EcoICRI	GAGCTC	1 cut(s)	1348
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	516, 786
EcoT38I	GRGCYC	1 cut(s)	1350
ErhI	CCWWGG	2 cut(s)	516, 786
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	2 cut(s)	979, 1013
FbaI	TGATCA	2 cut(s)	99, 241
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	4 cut(s)	876, 1050, 1318, 1332
FokI	GGATG	1 cut(s)	1117
FriOI	GRGCYC	1 cut(s)	1350
Fsp4HI	GCNGC	4 cut(s)	876, 1050, 1318, 1332
GlaI	GCGC	3 cut(s)	585, 1064, 1335
GluI	GCNGC	4 cut(s)	876, 1050, 1318, 1332
HaeII	RGCGCY	1 cut(s)	587
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	2 cut(s)	178, 997
HhaI	GCGC	3 cut(s)	586, 1065, 1336
Hin6I	GCGC	3 cut(s)	584, 1063, 1334
HinP1I	GCGC	3 cut(s)	584, 1063, 1334
HindIII	AAGCTT	2 cut(s)	662, 812
HinfI	GANTC	5 cut(s)	209, 549, 804, 907, 992
HpaII	CCGG	2 cut(s)	178, 997
HphI	GGTGA	3 cut(s)	106, 647, 1131
Hpy166II	GTNNAC	6 cut(s)	229, 592, 722, 925, 1017, 1205
Hpy188I	TCNGA	4 cut(s)	282, 574, 857, 869
Hpy188III	TCNNGA	4 cut(s)	617, 668, 767, 1159
Hpy8I	GTNNAC	6 cut(s)	229, 592, 722, 925, 1017, 1205
HpyCH4III	ACNGT	3 cut(s)	32, 865, 929
HpyCH4IV	ACGT	2 cut(s)	219, 759
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 113, 173, 1237
HpyF3I	CTNAG	6 cut(s)	273, 299, 334, 1011, 1045, 1098
HpySE526I	ACGT	2 cut(s)	219, 759
HspAI	GCGC	3 cut(s)	584, 1063, 1334
Ksp22I	TGATCA	2 cut(s)	99, 241
Kzo9I	GATC	4 cut(s)	99, 241, 1071, 1309
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	1 cut(s)	846
Lsp1109I	GCAGC	3 cut(s)	887, 1061, 1318
LweI	GCATC	1 cut(s)	1301
MaeII	ACGT	2 cut(s)	219, 759
MaeIII	GTNAC	5 cut(s)	109, 181, 635, 904, 1107
MalI	GATC	4 cut(s)	101, 243, 1073, 1311
MboI	GATC	4 cut(s)	99, 241, 1071, 1309
MboII	GAAGA	7 cut(s)	13, 23, 78, 500, 534, 932, 978
MhlI	GDGCHC	2 cut(s)	8, 1350
MluCI	AATT	9 cut(s)	46, 148, 245, 345, 353, 672, 1197, 1246, 1341
MlyI	GAGTC	4 cut(s)	543, 798, 901, 1001
MmeI	TCCRAC	7 cut(s)	237, 305, 402, 490, 847, 937, 1161
MnlI	CCTC	9 cut(s)	410, 580, 706, 818, 851, 1069, 1095, 1164, 1177
MseI	TTAA	6 cut(s)	135, 233, 426, 747, 780, 1325
MslI	CAYNNNNRTG	3 cut(s)	915, 975, 1355
MspCI	CTTAAG	1 cut(s)	232
MspI	CCGG	2 cut(s)	178, 997
MspR9I	CCNGG	5 cut(s)	178, 179, 269, 997, 998
Mva1269I	GAATGC	2 cut(s)	1128, 1135
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	4 cut(s)	71, 113, 173, 1237
NciI	CCSGG	4 cut(s)	178, 179, 997, 998
NdeII	GATC	4 cut(s)	99, 241, 1071, 1309
NlaIV	GGNNCC	2 cut(s)	265, 514
NmuCI	GTSAC	2 cut(s)	635, 904
NspI	RCATGY	1 cut(s)	1030
OliI	CACNNNNGTG	1 cut(s)	915
PagI	TCATGA	2 cut(s)	667, 1158
PciI	ACATGT	1 cut(s)	1026
PciSI	GCTCTTC	1 cut(s)	483
PctI	GAATGC	2 cut(s)	1128, 1135
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	877, 1051, 1319, 1333
PleI	GAGTC	4 cut(s)	543, 798, 901, 1000
PpsI	GAGTC	4 cut(s)	543, 798, 901, 1000
PscI	ACATGT	1 cut(s)	1026
Psp124BI	GAGCTC	1 cut(s)	1350
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	265, 514
RsaI	GTAC	3 cut(s)	438, 599, 1285
RsaNI	GTAC	3 cut(s)	437, 598, 1284
RseI	CAYNNNNRTG	3 cut(s)	915, 975, 1355
SacI	GAGCTC	1 cut(s)	1350
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	6 cut(s)	135, 233, 426, 747, 780, 1325
SatI	GCNGC	4 cut(s)	876, 1050, 1318, 1332
Sau3AI	GATC	4 cut(s)	99, 241, 1071, 1309
SchI	GAGTC	4 cut(s)	543, 798, 901, 1001
ScrFI	CCNGG	5 cut(s)	178, 179, 269, 997, 998
SduI	GDGCHC	2 cut(s)	8, 1350
SfaNI	GCATC	1 cut(s)	1301
SfcI	CTRYAG	1 cut(s)	367
SmaI	CCCGGG	2 cut(s)	179, 998
SmiMI	CAYNNNNRTG	3 cut(s)	915, 975, 1355
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	9 cut(s)	46, 148, 245, 345, 353, 672, 1197, 1246, 1341
SsiI	CCGC	2 cut(s)	1238, 1318
SstI	GAGCTC	1 cut(s)	1350
StyD4I	CCNGG	5 cut(s)	176, 177, 267, 995, 996
StyI	CCWWGG	2 cut(s)	516, 786
TaaI	ACNGT	3 cut(s)	32, 865, 929
TaiI	ACGT	2 cut(s)	222, 762
TaqI	TCGA	1 cut(s)	1074
TasI	AATT	9 cut(s)	46, 148, 245, 345, 353, 672, 1197, 1246, 1341
TatI	WGTACW	3 cut(s)	436, 597, 1283
TauI	GCSGC	1 cut(s)	1320
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	6 cut(s)	135, 233, 426, 747, 780, 1325
Tru9I	TTAA	6 cut(s)	135, 233, 426, 747, 780, 1325
TscAI	CASTG	2 cut(s)	37, 1312
TseFI	GTSAC	2 cut(s)	635, 904
TseI	GCWGC	3 cut(s)	875, 1049, 1331
Tsp45I	GTSAC	2 cut(s)	635, 904
TspDTI	ATGAA	3 cut(s)	593, 656, 684
TspGWI	ACGGA	1 cut(s)	40
TspMI	CCCGGG	2 cut(s)	177, 996
TspRI	CASTG	2 cut(s)	37, 1312
Vha464I	CTTAAG	1 cut(s)	232
XapI	RAATTY	2 cut(s)	353, 1246
XceI	RCATGY	1 cut(s)	1030
XmaI	CCCGGG	2 cut(s)	177, 996
XmiI	GTMKAC	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.