Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Reverse (-)

13282888 .. 13283412

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG079000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCTCTTAACCAATTTCAGAGGGACAGCCGGATATGCAGCCCCAGAGATGTGGAAGCCTTATCCTGTGACTCACAAATGTGATGTTTACAGTTTTGGTATTCTTCTCTTTGAGATTGTTGGAAGAAGACACTACGATGATAATGTGAGCGAGTCCCGGGACTGGCTACCTAAGTGGACATGGAACATGTTTGAGAAAAATAACTTAGCAGCACTATTATTGTGCTGTGGGATCGAGGAGAGAGACAGGAGAAAAGCTGAGAGGATGTTACTGATAGCTTTGTGGTGCATTCAGCATTCACCAGAAGCGAGACCTCTCATGAGCAATTTACTGCAAATGTTGGAGGGGCATAAAGAAATTACTCCACCTCCTTACCCCTTTGAACATTTGCAATCTTCGCAACGAAATTTCAGTCAAAATAGTGGAACAGATGACGACAATAGTACTTGTTCATCAGGCACACTTACTGATCCACGCCCTTTTTTAAGTGCTGCACATGAAATTGAGCCAGTTATCGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

174

Amino Acids

20.04

Weight (kDa)

5.51

Isoelectric Point (pI)

63.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 112	2e-07	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	11 - 114	3.3e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	239, 464
AcsI	RAATTY	1 cut(s)	406
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	383
AleI	CACNNNNGTG	1 cut(s)	78
AluBI	AGCT	2 cut(s)	257, 278
AluI	AGCT	2 cut(s)	257, 278
Alw26I	GTCTC	2 cut(s)	237, 304
AlwI	GGATC	2 cut(s)	239, 464
Ama87I	CYCGRG	1 cut(s)	156
ApeKI	GCWGC	3 cut(s)	38, 209, 491
ApoI	RAATTY	1 cut(s)	406
ArsI	GACNNNNNNTTYG	2 cut(s)	397, 429
AsuC2I	CCSGG	2 cut(s)	157, 158
AsuHPI	GGTGA	1 cut(s)	291
AvaI	CYCGRG	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	50, 221, 478
BcnI	CCSGG	2 cut(s)	157, 158
BcoDI	GTCTC	2 cut(s)	237, 304
BisI	GCNGC	3 cut(s)	39, 210, 492
BlsI	GCNGC	3 cut(s)	40, 211, 493
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	2 cut(s)	157, 158
BmeT110I	CYCGRG	1 cut(s)	156
BmrFI	CCNGG	2 cut(s)	157, 158
BpiI	GAAGAC	1 cut(s)	133
BpuMI	CCSGG	2 cut(s)	157, 158
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse1I	ACTGG	2 cut(s)	167, 509
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	167, 509
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	3 cut(s)	50, 221, 478
BsgI	GTGCAG	1 cut(s)	477
BsiHKCI	CYCGRG	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	30, 157
BslFI	GGGAC	3 cut(s)	37, 139, 173
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	2 cut(s)	237, 304
BsmFI	GGGAC	3 cut(s)	37, 139, 173
BsmI	GAATGC	2 cut(s)	288, 295
Bso31I	GGTCTC	1 cut(s)	304
BsoBI	CYCGRG	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	231, 469
BspCNI	CTCAG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	318
BspPI	GGATC	2 cut(s)	239, 464
BspTNI	GGTCTC	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	167, 509
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	231, 469
Bst4CI	ACNGT	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	171, 205, 258
BstF5I	GGATG	1 cut(s)	270
BstKTI	GATC	2 cut(s)	234, 472
BstMAI	GTCTC	2 cut(s)	237, 304
BstMBI	GATC	2 cut(s)	231, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 397
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	2 cut(s)	155, 156
BstV1I	GCAGC	3 cut(s)	50, 221, 478
BstV2I	GAAGAC	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	270
CciI	TCATGA	1 cut(s)	318
Cfr9I	CCCGGG	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	4 cut(s)	180, 187, 319, 497
CviJI	RGCY	7 cut(s)	29, 41, 58, 166, 257, 278, 508
CviKI_1	RGCY	7 cut(s)	29, 41, 58, 166, 257, 278, 508
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	3 cut(s)	171, 205, 258
DpnI	GATC	2 cut(s)	233, 471
DpnII	GATC	2 cut(s)	231, 469
Eco31I	GGTCTC	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	156
FaeI	CATG	4 cut(s)	183, 190, 322, 500
FaiI	YATR	6 cut(s)	36, 181, 188, 320, 351, 498
FaqI	GGGAC	3 cut(s)	37, 139, 173
FatI	CATG	4 cut(s)	179, 186, 318, 496
Fnu4HI	GCNGC	3 cut(s)	39, 210, 492
FokI	GGATG	1 cut(s)	277
Fsp4HI	GCNGC	3 cut(s)	39, 210, 492
GluI	GCNGC	3 cut(s)	39, 210, 492
HapII	CCGG	2 cut(s)	30, 157
Hin1II	CATG	4 cut(s)	183, 190, 322, 500
HinfI	GANTC	2 cut(s)	70, 152
HpaII	CCGG	2 cut(s)	30, 157
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	2 cut(s)	88, 177
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	2 cut(s)	88, 177
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	5 cut(s)	38, 288, 334, 391, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 397
HpyF3I	CTNAG	3 cut(s)	171, 205, 258
Hsp92II	CATG	4 cut(s)	183, 190, 322, 500
Kzo9I	GATC	2 cut(s)	231, 469
LpnPI	CCDG	8 cut(s)	43, 57, 78, 148, 170, 232, 315, 441
Lsp1109I	GCAGC	3 cut(s)	50, 221, 478
MaeIII	GTNAC	2 cut(s)	67, 267
MalI	GATC	2 cut(s)	233, 471
MboI	GATC	2 cut(s)	231, 469
MboII	GAAGA	4 cut(s)	95, 135, 138, 387
MluCI	AATT	5 cut(s)	13, 325, 357, 406, 501
MlyI	GAGTC	2 cut(s)	64, 161
MmeI	TCCRAC	2 cut(s)	100, 321
MnlI	CCTC	6 cut(s)	14, 229, 255, 324, 337, 378
MseI	TTAA	2 cut(s)	8, 485
MslI	CAYNNNNRTG	2 cut(s)	78, 135
MspI	CCGG	2 cut(s)	30, 157
MspR9I	CCNGG	2 cut(s)	157, 158
Mva1269I	GAATGC	2 cut(s)	288, 295
MwoI	GCNNNNNNNGC	2 cut(s)	35, 397
NciI	CCSGG	2 cut(s)	157, 158
NdeII	GATC	2 cut(s)	231, 469
NlaIII	CATG	4 cut(s)	183, 190, 322, 500
NmuCI	GTSAC	1 cut(s)	67
NspI	RCATGY	1 cut(s)	190
OliI	CACNNNNGTG	1 cut(s)	78
PagI	TCATGA	1 cut(s)	318
PciI	ACATGT	1 cut(s)	186
PctI	GAATGC	2 cut(s)	288, 295
PkrI	GCNGC	3 cut(s)	40, 211, 493
PleI	GAGTC	2 cut(s)	64, 160
PpsI	GAGTC	2 cut(s)	64, 160
PscI	ACATGT	1 cut(s)	186
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
RseI	CAYNNNNRTG	2 cut(s)	78, 135
SaqAI	TTAA	2 cut(s)	8, 485
SatI	GCNGC	3 cut(s)	39, 210, 492
Sau3AI	GATC	2 cut(s)	231, 469
ScaI	AGTACT	1 cut(s)	445
SchI	GAGTC	2 cut(s)	64, 161
ScrFI	CCNGG	2 cut(s)	157, 158
SetI	ASST	5 cut(s)	172, 259, 280, 316, 370
SmaI	CCCGGG	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	78, 135
Sse9I	AATT	5 cut(s)	13, 325, 357, 406, 501
StyD4I	CCNGG	2 cut(s)	155, 156
TaaI	ACNGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	234
TasI	AATT	5 cut(s)	13, 325, 357, 406, 501
TatI	WGTACW	1 cut(s)	443
Tru1I	TTAA	2 cut(s)	8, 485
Tru9I	TTAA	2 cut(s)	8, 485
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	3 cut(s)	38, 209, 491
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	441, 513
TspMI	CCCGGG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	406
XceI	RCATGY	1 cut(s)	190
XmaI	CCCGGG	1 cut(s)	156
ZrmI	AGTACT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.