Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Reverse (-)

36287808 .. 36288611

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1307500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCGAGCACTTGTCTATGAGTGCATGGAGAATGGATCACTTGACGAGTTCTTGTTTAGTGAGCATAGAGAAATAGGTTTGGAGATGCTGCACAATATCGCAGTCCAAACAGCAAAAGGGTTGGCTTATTTGCATGAGGAATGTGAACAAAGAATCATTCATTATGATATTAAGCCCGGGAATGTACTTCTCAATAAGAATTTGAATCCAAAGGTCGCAGATTTTGGACTTGCCAAGCTTTGCAACAGAGGAAGCAGTCAAATGTTGTTAACCAAGGGAAGAGGGACACCCGGATATGCAGCACCAGAGATGTGGAAGCCTTATCCGGTTACTCACAAGTGCGATGTTTACAGTTTTGGCATGCTTCTCTTTGAGGTTGTTGGAAGGAGGAGAAATTTTGATGAGGATGTAAATGAGTCACACGAATGGCTTCCGAGGTGGATCTGGAACATGTTTCATAACAATGAATTAGAAGAGGTGCTGTCGTTTTGTGGGATTGAAGAACAAGACAGAGAAAAAGCAGAGAAGATGATAATGGTAGCTCTGCTGTGCATTCAGCATGCACCGGAAGCAAGACCTCTCATGAGCAATGTAGTGCAGATGTTGGAGGGACATAATGAAATTGATTCACCGCCTTTTCCTTTCCAGCATTTGCAGTCGCCGCAAGGAAATTTAACACAACATAGTGGAACAGATGAAGACTTGAGTTCTTCTGCATCAGCCACGAAAACTTCTGCACAATCCGAGCACCCTTATAATACTGCTGTACAGAACAAATGTGAAATTGAGCTAGCTACATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

268

Amino Acids

30.44

Weight (kDa)

5.21

Isoelectric Point (pI)

62.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 200	1.5e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 202	1.2e-30	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	756
AciI	CCGC	2 cut(s)	632, 662
AclWI	GGATC	2 cut(s)	43, 449
AcsI	RAATTY	3 cut(s)	199, 394, 670
AfaI	GTAC	2 cut(s)	186, 768
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	2 cut(s)	205, 500
AluBI	AGCT	4 cut(s)	238, 542, 790, 794
AluI	AGCT	4 cut(s)	238, 542, 790, 794
Alw21I	GWGCWC	2 cut(s)	10, 750
AlwI	GGATC	2 cut(s)	43, 449
Ama87I	CYCGRG	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	88, 299
ApoI	RAATTY	3 cut(s)	199, 394, 670
Asp700I	GAANNNNTTC	1 cut(s)	429
AsuC2I	CCSGG	3 cut(s)	177, 178, 291
AsuHPI	GGTGA	1 cut(s)	621
AsuNHI	GCTAGC	1 cut(s)	790
AvaI	CYCGRG	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	2 cut(s)	10, 750
BbvI	GCAGC	2 cut(s)	75, 311
BcnI	CCSGG	3 cut(s)	177, 178, 291
BfaI	CTAG	1 cut(s)	791
BisI	GCNGC	3 cut(s)	89, 300, 662
BlsI	GCNGC	3 cut(s)	90, 301, 663
Bme1390I	CCNGG	3 cut(s)	177, 178, 291
BmeT110I	CYCGRG	1 cut(s)	176
BmrFI	CCNGG	3 cut(s)	177, 178, 291
BmsI	GCATC	2 cut(s)	75, 725
BmtI	GCTAGC	1 cut(s)	794
BpiI	GAAGAC	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	724
BpuMI	CCSGG	3 cut(s)	177, 178, 291
BsaJI	CCNNGG	3 cut(s)	176, 273, 434
BsaWI	WCCGGW	2 cut(s)	325, 565
Bse3DI	GCAATG	1 cut(s)	595
BseDI	CCNNGG	3 cut(s)	176, 273, 434
BseGI	GGATG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	595
BseRI	GAGGAG	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	75, 311
BsgI	GTGCAG	3 cut(s)	74, 617, 720
BsiHKAI	GWGCWC	2 cut(s)	10, 750
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	4 cut(s)	177, 291, 326, 566
BslFI	GGGAC	2 cut(s)	298, 624
BsmFI	GGGAC	2 cut(s)	298, 624
BsmI	GAATGC	1 cut(s)	552
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	10, 750
Bsp1407I	TGTACA	1 cut(s)	766
Bsp143I	GATC	2 cut(s)	35, 441
BspACI	CCGC	2 cut(s)	632, 662
BspHI	TCATGA	1 cut(s)	582
BspOI	GCTAGC	1 cut(s)	794
BspPI	GGATC	2 cut(s)	43, 449
BsrDI	GCAATG	1 cut(s)	595
BsrGI	TGTACA	1 cut(s)	766
BssECI	CCNNGG	3 cut(s)	176, 273, 434
BssMI	GATC	2 cut(s)	35, 441
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	2 cut(s)	274, 468
BstAUI	TGTACA	1 cut(s)	766
BstC8I	GCNNGC	4 cut(s)	6, 362, 561, 792
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	2 cut(s)	38, 444
BstMBI	GATC	2 cut(s)	35, 441
BstMWI	GCNNNNNNNGC	2 cut(s)	569, 661
BstNSI	RCATGY	3 cut(s)	364, 454, 563
BstSCI	CCNGG	3 cut(s)	175, 176, 289
BstV1I	GCAGC	2 cut(s)	75, 311
BstV2I	GAAGAC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	441
BstXI	CCANNNNNNTGG	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	441
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	412
Cac8I	GCNNGC	4 cut(s)	6, 362, 561, 792
CciI	TCATGA	1 cut(s)	582
Cfr9I	CCCGGG	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	185, 767
CviAII	CATG	6 cut(s)	25, 134, 361, 451, 560, 583
CviJI	RGCY	9 cut(s)	125, 175, 238, 319, 430, 542, 722, 790, 794
CviKI_1	RGCY	9 cut(s)	125, 175, 238, 319, 430, 542, 722, 790, 794
CviQI	GTAC	2 cut(s)	185, 767
DpnI	GATC	2 cut(s)	37, 443
DpnII	GATC	2 cut(s)	35, 441
Eam1104I	CTCTTC	2 cut(s)	274, 468
EarI	CTCTTC	2 cut(s)	274, 468
Eco130I	CCWWGG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	6 cut(s)	28, 137, 364, 454, 563, 586
FaqI	GGGAC	2 cut(s)	298, 624
FatI	CATG	6 cut(s)	24, 133, 360, 450, 559, 582
Fnu4HI	GCNGC	3 cut(s)	89, 300, 662
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	3 cut(s)	89, 300, 662
FspBI	CTAG	1 cut(s)	791
GluI	GCNGC	3 cut(s)	89, 300, 662
HapII	CCGG	4 cut(s)	177, 291, 326, 566
Hin1II	CATG	6 cut(s)	28, 137, 364, 454, 563, 586
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	4 cut(s)	153, 205, 416, 626
HpaI	GTTAAC	1 cut(s)	270
HpaII	CCGG	4 cut(s)	177, 291, 326, 566
HphI	GGTGA	1 cut(s)	621
Hpy166II	GTNNAC	3 cut(s)	146, 270, 349
Hpy188I	TCNGA	2 cut(s)	435, 745
Hpy188III	TCNNGA	2 cut(s)	445, 583
Hpy8I	GTNNAC	3 cut(s)	146, 270, 349
HpyAV	CCTTC	1 cut(s)	378
HpyCH4III	ACNGT	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	569, 661
Hsp92II	CATG	6 cut(s)	28, 137, 364, 454, 563, 586
KspAI	GTTAAC	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	35, 441
LpnPI	CCDG	7 cut(s)	190, 304, 318, 339, 430, 579, 659
Lsp1109I	GCAGC	2 cut(s)	75, 311
LweI	GCATC	2 cut(s)	75, 725
MaeI	CTAG	1 cut(s)	791
MaeIII	GTNAC	2 cut(s)	328, 417
MalI	GATC	2 cut(s)	37, 443
MboI	GATC	2 cut(s)	35, 441
MboII	GAAGA	6 cut(s)	291, 485, 512, 538, 702, 710
MflI	RGATCY	1 cut(s)	441
MhlI	GDGCHC	2 cut(s)	10, 750
MluCI	AATT	6 cut(s)	199, 394, 467, 621, 670, 783
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	2 cut(s)	361, 585
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	4 cut(s)	171, 269, 674, 802
MslI	CAYNNNNRTG	2 cut(s)	424, 462
MspI	CCGG	4 cut(s)	177, 291, 326, 566
MspR9I	CCNGG	3 cut(s)	177, 178, 291
Mva1269I	GAATGC	1 cut(s)	552
MwoI	GCNNNNNNNGC	2 cut(s)	569, 661
NciI	CCSGG	3 cut(s)	177, 178, 291
NdeII	GATC	2 cut(s)	35, 441
NheI	GCTAGC	1 cut(s)	790
NlaIII	CATG	6 cut(s)	28, 137, 364, 454, 563, 586
NmuCI	GTSAC	1 cut(s)	417
NspI	RCATGY	3 cut(s)	364, 454, 563
PaeI	GCATGC	2 cut(s)	364, 563
PagI	TCATGA	1 cut(s)	582
PciI	ACATGT	1 cut(s)	450
PctI	GAATGC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	153, 205, 626
PkrI	GCNGC	3 cut(s)	90, 301, 663
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PscI	ACATGT	1 cut(s)	450
PsiI	TTATAA	1 cut(s)	756
PsuI	RGATCY	1 cut(s)	441
RsaI	GTAC	2 cut(s)	186, 768
RsaNI	GTAC	2 cut(s)	185, 767
RseI	CAYNNNNRTG	2 cut(s)	424, 462
SaqAI	TTAA	4 cut(s)	171, 269, 674, 802
SatI	GCNGC	3 cut(s)	89, 300, 662
Sau3AI	GATC	2 cut(s)	35, 441
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	3 cut(s)	177, 178, 291
SduI	GDGCHC	2 cut(s)	10, 750
SfaNI	GCATC	2 cut(s)	75, 725
SmaI	CCCGGG	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	424, 462
SmlI	CTYRAG	1 cut(s)	703
SmoI	CTYRAG	1 cut(s)	703
SphI	GCATGC	2 cut(s)	364, 563
Sse9I	AATT	6 cut(s)	199, 394, 467, 621, 670, 783
SsiI	CCGC	2 cut(s)	632, 662
SspMI	CTAG	1 cut(s)	791
StyD4I	CCNGG	3 cut(s)	175, 176, 289
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	353
TasI	AATT	6 cut(s)	199, 394, 467, 621, 670, 783
TatI	WGTACW	2 cut(s)	184, 766
TauI	GCSGC	1 cut(s)	664
TfiI	GAWTC	3 cut(s)	153, 205, 626
Tru1I	TTAA	4 cut(s)	171, 269, 674, 802
Tru9I	TTAA	4 cut(s)	171, 269, 674, 802
TseFI	GTSAC	1 cut(s)	417
TseI	GCWGC	2 cut(s)	88, 299
Tsp45I	GTSAC	1 cut(s)	417
TspDTI	ATGAA	5 cut(s)	149, 446, 480, 633, 711
TspMI	CCCGGG	1 cut(s)	176
XapI	RAATTY	3 cut(s)	199, 394, 670
XceI	RCATGY	3 cut(s)	364, 454, 563
XmaI	CCCGGG	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.