Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Reverse (-)

15372508 .. 15374089

Gene Structure 1582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55641

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGTACCGCTTTTCTACTGTGGTACTGATCATTGCTGTTACAGCCATTATATGTGCCATTATTAACTGCGTGCAAAAGTCTGGAAGTTCTATTCCAATTTCTGCCAAGATAAGTAGTAGCAATACCGACAACGATTCCAACAACAAAGTAGCAGTGGACTTGAGACGTGTTCAATTTCCAGTAGCTTTTGATTCCCAGGCTGAGTTTCCGACAATCAAAGGGTTTCTAAGCAACATGGCAAGAGAGAAGCCTATAACTTACTCAGCGAAGCAAATTGCAGAATTCACACATAACTATAGCTACTCTAACATATTAGGTTCAGGCGGTTTTGGAGTAGTATATAAAGGGCTTCTCGAAAATGGAGTACAAGTGGCTGTCAAGGTCCTTACGAACAACAATAGGGCTAAGATAGTTGAAGAGCAGTTTATGGCAGAAGTTGGAGCCTTGGGAAGAACTTACCACGTCAATTTGGTTAGACTCTATGGCTTCTGCTTCGCCCCCGAAATGAAAGCCCTTGTCTATGAGTACATGGAGAATGGTTCTCTTGACAAGTTATTGTTCAGTGACAATGGAGAAGTAGATTTAGAGAAGCTTCATGTTATTGCAGTCCAAACTGCAAAAGGGTTGGCTTATTTGCATGAGGAGTGTGAACAAAAGATCATTCACTATGATATTAAGCCCGAAAATGTGCTTCTGGATGAGAACTTGAATCCCAAGGTTGCGGATTTTGGACTCGCCAAGCTTTGCAATAGAGGGAGTAGTCGAATGCTCCTAACCAATTTCAGAGGGACAGCTGGATATGCAGCGCCAGAGATGTGGAAGCCTTATCCTGTGACTCACAAATGTGATGTTTACAGTTTTGGTATTCTTCTCTTTGAGATTGTTGGAAGAAGAAGACACTGCGACGATAATGTGAGCGAGTCTCGAGACTGGCTACCTAAGTGGACATGGAACATGTTTGAGAAAAATGACTTAGCAACACTGTTATTGCGCTGTGGGATCGAAGAGAGAGACAGGGGAAAAGCAGAGAGGATGTTAATGATAGCTCTGTGGTGCATTCAGCATTCACCAGAAGCAAGACCTCTCATGAGCAATGTAGTGCAAATGTTGGAGGGGCATAAAGAAATTACTCCACCTCCTTGCCCCTTTGAACATGTGCAATCTCCGCAACTAAATTTCAGTCAAAATAGTGGAACAGATGACAACACTAGTACTTCGGCATCAGCTACAATGATTGATCCACACCCTAGTGTGACGCATGAAATTGAGCTAGTTGTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

427

Amino Acids

47.89

Weight (kDa)

5.89

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	99 - 368	1.2e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	102 - 370	2e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	7, 324, 722, 1166
AclWI	GGATC	2 cut(s)	1007, 1232
AcsI	RAATTY	2 cut(s)	281, 1174
AfaI	GTAC	5 cut(s)	5, 24, 366, 527, 1213
AflIII	ACRYGT	3 cut(s)	166, 954, 1153
AgsI	TTSAA	4 cut(s)	173, 416, 709, 1151
AhlI	ACTAGT	1 cut(s)	1208
AjiI	CACGTC	2 cut(s)	167, 463
AjnI	CCWGG	1 cut(s)	195
AleI	CACNNNNGTG	2 cut(s)	843, 1248
AluBI	AGCT	8 cut(s)	185, 300, 592, 742, 794, 1046, 1226, 1270
AluI	AGCT	8 cut(s)	185, 300, 592, 742, 794, 1046, 1226, 1270
Alw26I	GTCTC	4 cut(s)	157, 921, 927, 1005
AlwI	GGATC	2 cut(s)	1007, 1232
Ama87I	CYCGRG	1 cut(s)	924
ApeKI	GCWGC	1 cut(s)	803
ApoI	RAATTY	2 cut(s)	281, 1174
AspLEI	GCGC	2 cut(s)	808, 993
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	1059
AvaI	CYCGRG	1 cut(s)	924
AvaII	GGWCC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	901
BbvI	GCAGC	1 cut(s)	815
BciT130I	CCWGG	1 cut(s)	197
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	4 cut(s)	157, 921, 927, 1005
BcuI	ACTAGT	1 cut(s)	1208
BfaI	CTAG	3 cut(s)	1209, 1248, 1271
BfmI	CTRYAG	1 cut(s)	295
BfoI	RGCGCY	1 cut(s)	809
BisI	GCNGC	1 cut(s)	804
BlsI	GCNGC	1 cut(s)	805
BmcAI	AGTACT	1 cut(s)	1213
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	924
BmgBI	CACGTC	2 cut(s)	167, 463
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	1229
BpiI	GAAGAC	1 cut(s)	901
BplI	GAGNNNNNCTC	2 cut(s)	907, 939
BpuEI	CTTGAG	1 cut(s)	181
BsaJI	CCNNGG	3 cut(s)	195, 444, 714
BsaXI	ACNNNNNCTCC	4 cut(s)	354, 384, 1120, 1150
Bse1I	ACTGG	2 cut(s)	179, 935
Bse3DI	GCAATG	2 cut(s)	30, 1099
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	3 cut(s)	195, 444, 714
BseGI	GGATG	2 cut(s)	703, 1038
BseMI	GCAATG	2 cut(s)	30, 1099
BseMII	CTCAG	2 cut(s)	192, 276
BseNI	ACTGG	2 cut(s)	179, 935
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	1 cut(s)	815
BsiHKCI	CYCGRG	1 cut(s)	924
BslFI	GGGAC	1 cut(s)	802
BsmAI	GTCTC	4 cut(s)	157, 921, 927, 1005
BsmBI	CGTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	802
BsmI	GAATGC	3 cut(s)	771, 1056, 1063
BsoBI	CYCGRG	1 cut(s)	924
Bsp143I	GATC	4 cut(s)	27, 657, 999, 1237
BspACI	CCGC	4 cut(s)	7, 324, 722, 1166
BspCNI	CTCAG	2 cut(s)	193, 275
BspHI	TCATGA	1 cut(s)	1086
BspLI	GGNNCC	1 cut(s)	442
BspPI	GGATC	2 cut(s)	1007, 1232
BspQI	GCTCTTC	1 cut(s)	411
BsrDI	GCAATG	2 cut(s)	30, 1099
BsrI	ACTGG	2 cut(s)	179, 935
BssECI	CCNNGG	3 cut(s)	195, 444, 714
BssMI	GATC	4 cut(s)	27, 657, 999, 1237
BssT1I	CCWWGG	2 cut(s)	444, 714
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	3 cut(s)	19, 857, 984
Bst6I	CTCTTC	2 cut(s)	411, 999
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	6 cut(s)	201, 227, 262, 405, 939, 973
BstF5I	GGATG	2 cut(s)	703, 1038
BstH2I	RGCGCY	1 cut(s)	809
BstHHI	GCGC	2 cut(s)	808, 993
BstKTI	GATC	4 cut(s)	30, 660, 1002, 1240
BstMAI	GTCTC	4 cut(s)	157, 921, 927, 1005
BstMBI	GATC	4 cut(s)	27, 657, 999, 1237
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 800, 1165
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	2 cut(s)	958, 1157
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	815
BstV2I	GAAGAC	1 cut(s)	901
BstXI	CCANNNNNNTGG	1 cut(s)	816
BtrI	CACGTC	2 cut(s)	167, 463
BtsCI	GGATG	2 cut(s)	703, 1038
BtsI	GCAGTG	2 cut(s)	159, 898
BtsIMutI	CAGTG	4 cut(s)	159, 568, 898, 980
Cac8I	GCNNGC	1 cut(s)	71
CciI	TCATGA	1 cut(s)	1086
CfoI	GCGC	2 cut(s)	808, 993
Cfr13I	GGNCC	1 cut(s)	382
CseI	GACGC	1 cut(s)	1264
Csp6I	GTAC	5 cut(s)	4, 23, 365, 526, 1212
CviAII	CATG	9 cut(s)	235, 529, 596, 638, 948, 955, 1087, 1154, 1259
CviQI	GTAC	5 cut(s)	4, 23, 365, 526, 1212
DdeI	CTNAG	6 cut(s)	201, 227, 262, 405, 939, 973
DpnI	GATC	4 cut(s)	29, 659, 1001, 1239
DpnII	GATC	4 cut(s)	27, 657, 999, 1237
Eam1104I	CTCTTC	2 cut(s)	411, 999
EarI	CTCTTC	2 cut(s)	411, 999
Eco130I	CCWWGG	2 cut(s)	444, 714
Eco47I	GGWCC	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	924
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	2 cut(s)	444, 714
ErhI	CCWWGG	2 cut(s)	444, 714
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	9 cut(s)	238, 532, 599, 641, 951, 958, 1090, 1157, 1262
FaqI	GGGAC	1 cut(s)	802
FatI	CATG	9 cut(s)	234, 528, 595, 637, 947, 954, 1086, 1153, 1258
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	804
FokI	GGATG	2 cut(s)	710, 1045
Fsp4HI	GCNGC	1 cut(s)	804
FspBI	CTAG	3 cut(s)	1209, 1248, 1271
GlaI	GCGC	2 cut(s)	807, 992
GluI	GCNGC	1 cut(s)	804
HaeII	RGCGCY	1 cut(s)	809
HgaI	GACGC	1 cut(s)	1264
HhaI	GCGC	2 cut(s)	808, 993
Hin1II	CATG	9 cut(s)	238, 532, 599, 641, 951, 958, 1090, 1157, 1262
Hin6I	GCGC	2 cut(s)	806, 991
HinP1I	GCGC	2 cut(s)	806, 991
HindIII	AAGCTT	2 cut(s)	590, 740
HinfI	GANTC	7 cut(s)	134, 191, 477, 709, 732, 835, 920
HphI	GGTGA	1 cut(s)	1059
Hpy166II	GTNNAC	4 cut(s)	157, 650, 853, 945
Hpy188I	TCNGA	2 cut(s)	210, 785
Hpy188III	TCNNGA	7 cut(s)	81, 353, 545, 695, 924, 926, 1087
Hpy8I	GTNNAC	4 cut(s)	157, 650, 853, 945
Hpy99I	CGWCG	1 cut(s)	908
HpyCH4III	ACNGT	3 cut(s)	19, 857, 984
HpyCH4IV	ACGT	2 cut(s)	166, 462
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 800, 1165
HpyF3I	CTNAG	6 cut(s)	201, 227, 262, 405, 939, 973
HpySE526I	ACGT	2 cut(s)	166, 462
Hsp92II	CATG	9 cut(s)	238, 532, 599, 641, 951, 958, 1090, 1157, 1262
HspAI	GCGC	2 cut(s)	806, 991
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	27, 657, 999, 1237
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	440, 774
Lsp1109I	GCAGC	1 cut(s)	815
LweI	GCATC	1 cut(s)	1229
MaeI	CTAG	3 cut(s)	1209, 1248, 1271
MaeII	ACGT	2 cut(s)	166, 462
MaeIII	GTNAC	4 cut(s)	37, 563, 832, 1252
MalI	GATC	4 cut(s)	29, 659, 1001, 1239
MboI	GATC	4 cut(s)	27, 657, 999, 1237
MboII	GAAGA	7 cut(s)	428, 462, 860, 900, 903, 906, 1016
MluCI	AATT	9 cut(s)	96, 173, 273, 281, 466, 778, 1125, 1174, 1263
MlyI	GAGTC	4 cut(s)	471, 726, 829, 929
MmeI	TCCRAC	5 cut(s)	162, 233, 418, 865, 1089
MnlI	CCTC	7 cut(s)	634, 746, 779, 1023, 1092, 1105, 1146
MseI	TTAA	3 cut(s)	63, 675, 1037
MslI	CAYNNNNRTG	2 cut(s)	843, 1248
MspA1I	CMGCKG	1 cut(s)	794
MspR9I	CCNGG	1 cut(s)	197
Mva1269I	GAATGC	3 cut(s)	771, 1056, 1063
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	41, 800, 1165
NdeII	GATC	4 cut(s)	27, 657, 999, 1237
NlaIII	CATG	9 cut(s)	238, 532, 599, 641, 951, 958, 1090, 1157, 1262
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	3 cut(s)	563, 832, 1252
NspI	RCATGY	2 cut(s)	958, 1157
OliI	CACNNNNGTG	2 cut(s)	843, 1248
PaeR7I	CTCGAG	1 cut(s)	924
PagI	TCATGA	1 cut(s)	1086
PciI	ACATGT	2 cut(s)	954, 1153
PciSI	GCTCTTC	1 cut(s)	411
PctI	GAATGC	3 cut(s)	771, 1056, 1063
PfeI	GAWTC	3 cut(s)	134, 191, 709
PkrI	GCNGC	1 cut(s)	805
PleI	GAGTC	4 cut(s)	471, 726, 829, 928
PpsI	GAGTC	4 cut(s)	471, 726, 829, 928
PpuMI	RGGWCCY	1 cut(s)	382
PscI	ACATGT	2 cut(s)	954, 1153
Psp5II	RGGWCCY	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	382
PspPPI	RGGWCCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	5 cut(s)	5, 24, 366, 527, 1213
RsaNI	GTAC	5 cut(s)	4, 23, 365, 526, 1212
RseI	CAYNNNNRTG	2 cut(s)	843, 1248
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	63, 675, 1037
SatI	GCNGC	1 cut(s)	804
Sau3AI	GATC	4 cut(s)	27, 657, 999, 1237
Sau96I	GGNCC	1 cut(s)	382
ScaI	AGTACT	1 cut(s)	1213
SchI	GAGTC	4 cut(s)	471, 726, 829, 929
ScrFI	CCNGG	1 cut(s)	197
SfaNI	GCATC	1 cut(s)	1229
SfcI	CTRYAG	1 cut(s)	295
Sfr274I	CTCGAG	1 cut(s)	924
SinI	GGWCC	1 cut(s)	382
SlaI	CTCGAG	1 cut(s)	924
SmiMI	CAYNNNNRTG	2 cut(s)	843, 1248
SmlI	CTYRAG	2 cut(s)	160, 924
SmoI	CTYRAG	2 cut(s)	160, 924
SpeI	ACTAGT	1 cut(s)	1208
Sse9I	AATT	9 cut(s)	96, 173, 273, 281, 466, 778, 1125, 1174, 1263
SsiI	CCGC	4 cut(s)	7, 324, 722, 1166
SspMI	CTAG	3 cut(s)	1209, 1248, 1271
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	2 cut(s)	444, 714
TaaI	ACNGT	3 cut(s)	19, 857, 984
TaiI	ACGT	2 cut(s)	169, 465
TaqI	TCGA	5 cut(s)	354, 763, 925, 1002, 1278
TasI	AATT	9 cut(s)	96, 173, 273, 281, 466, 778, 1125, 1174, 1263
TatI	WGTACW	3 cut(s)	364, 525, 1211
TfiI	GAWTC	3 cut(s)	134, 191, 709
Tru1I	TTAA	3 cut(s)	63, 675, 1037
Tru9I	TTAA	3 cut(s)	63, 675, 1037
TscAI	CASTG	4 cut(s)	159, 568, 905, 987
TseFI	GTSAC	3 cut(s)	563, 832, 1252
TseI	GCWGC	1 cut(s)	803
Tsp45I	GTSAC	3 cut(s)	563, 832, 1252
TspDTI	ATGAA	3 cut(s)	521, 584, 1275
TspRI	CASTG	4 cut(s)	159, 568, 905, 987
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	2 cut(s)	281, 1174
XceI	RCATGY	2 cut(s)	958, 1157
XhoI	CTCGAG	1 cut(s)	924
XspI	CTAG	3 cut(s)	1209, 1248, 1271
ZrmI	AGTACT	1 cut(s)	1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.