Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Reverse (-)

15296237 .. 15297412

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55632

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAGTAGTAACAATACCGACAACGATTCCAACAACAAAGTAGCAGTGGACTTGAGACATGATCAATTTCCAGTAGCTTTTGATTCCCAGGCTGAGTTTCCAACAATCAAAGGGTTTCTAAGAAACATGGCAAGGGAGAAGCCTATAACTTACTCAGCAAAGCAAATTGCAGAATTCACACATAACTATAGCTACTCTAATATATTAGGTTCAGGTGGTTTTGGAGTAGTATATAAAGGGCTTCTCGAAAATGGAGTACAAGTGGCTGTCAAGGTCCTTACCAACCACAATAGGGCTAAGATAGTTGAAGAGCAGTTTATGGCAGAAGTTGGAACCTTGGGAAGAACTTACCACGTCAATCTGGTTAGACTCTATGGCTTCTGCTTTGCCCCAGAAATGAAAGCCCTCGTCTACGAGTACATGGAGAAAGGTTCTCTTGACAAGTTATTGTTCAGTGACAATGGAGAAGTAGATTTAGAGAAGCTGCATGTTATTGCAGTCCAAACTGCAAAAGGGTTGGCTTATTTGCATGAGGAGTGTGAACAAAAAATCATTCACTATGATATTAAGCCCGAAAATGTACTTCTGGATGAGAACTTGAATCCTAAGGTTGCGGATTTTGGACTCGCCAAGCTTTGCAATAGAGGGAGTAGTCGAATGCTCCTAACCAATTTCAGAGGGACAGCTGGATATGCAGCCCCAGAGATGTGGATGCCTTATCCTGTGACTCACAAATGTGATGTTTACAGTTTTGGTATTCTTCTCTTTGAGATTGTTGGAAGAAGAAGACACTGCGACGATAATTTGAGCCAGTCCCGAGACTGGCTACCTAAGTGGACATGGAACATGTTTGAGAAAAATGACTTAGCAACACTATTATTGCGCTGTGGGATCGAAGAGAGAGACAGGGGAAAAGCAGAGAGGATGTTAATGATAGCTTTGTGGTGCATTCAGCATTCACCAGAAGCAAGGCCTCTCATGAGCAATGTAGCGCAAATGTTGGAGGGGCATAAAGAAATTACTCCACCTCCTTGCCCCTTTGAACATTTGCAATCTGCACAACTGAATTTCAGTCAAAATAGTGGAACAGATGACGACACTAGTACTTTGGCATCAACCACAATGATTGATCCACACCCTAGTGTGGCACATGAAATTGAGCTAGTTGTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

391

Amino Acids

44.28

Weight (kDa)

5.64

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	63 - 330	8e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	66 - 334	4.7e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	1 cut(s)	614
AclWI	GGATC	2 cut(s)	899, 1124
AcsI	RAATTY	2 cut(s)	173, 1066
AfaI	GTAC	4 cut(s)	258, 419, 582, 1105
AfiI	CCNNNNNNNGG	3 cut(s)	292, 822, 1144
AflIII	ACRYGT	1 cut(s)	846
AgsI	TTSAA	3 cut(s)	308, 601, 1043
AhlI	ACTAGT	1 cut(s)	1100
AjiI	CACGTC	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	87
AleI	CACNNNNGTG	2 cut(s)	735, 1140
AluBI	AGCT	7 cut(s)	77, 192, 484, 634, 686, 938, 1162
AluI	AGCT	7 cut(s)	77, 192, 484, 634, 686, 938, 1162
Alw26I	GTCTC	3 cut(s)	49, 813, 897
AlwI	GGATC	2 cut(s)	899, 1124
Ama87I	CYCGRG	1 cut(s)	816
AoxI	GGCC	1 cut(s)	971
ApeKI	GCWGC	2 cut(s)	484, 695
ApoI	RAATTY	2 cut(s)	173, 1066
AspLEI	GCGC	2 cut(s)	885, 994
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	951
AvaI	CYCGRG	1 cut(s)	816
AvaII	GGWCC	1 cut(s)	274
AxyI	CCTNAGG	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	793
BbvI	GCAGC	2 cut(s)	471, 707
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	3 cut(s)	49, 813, 897
BcuI	ACTAGT	1 cut(s)	1100
BfaI	CTAG	3 cut(s)	1101, 1140, 1163
BfmI	CTRYAG	1 cut(s)	187
BisI	GCNGC	2 cut(s)	485, 696
BlsI	GCNGC	2 cut(s)	486, 697
BmcAI	AGTACT	1 cut(s)	1105
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	816
BmgBI	CACGTC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	702, 1121
BpiI	GAAGAC	1 cut(s)	793
BpuEI	CTTGAG	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	87, 336
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 1012, 1042
Bsc4I	CCNNNNNNNGG	3 cut(s)	292, 822, 1144
Bse1I	ACTGG	3 cut(s)	71, 811, 827
Bse21I	CCTNAGG	1 cut(s)	606
Bse3DI	GCAATG	1 cut(s)	991
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	87, 336
BseGI	GGATG	3 cut(s)	595, 717, 930
BseLI	CCNNNNNNNGG	3 cut(s)	292, 822, 1144
BseMI	GCAATG	1 cut(s)	991
BseMII	CTCAG	2 cut(s)	84, 168
BseNI	ACTGG	3 cut(s)	71, 811, 827
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	2 cut(s)	471, 707
BsgI	GTGCAG	1 cut(s)	1041
BshFI	GGCC	1 cut(s)	973
BsiHKCI	CYCGRG	1 cut(s)	816
BslFI	GGGAC	2 cut(s)	694, 799
BslI	CCNNNNNNNGG	3 cut(s)	292, 822, 1144
BsmAI	GTCTC	3 cut(s)	49, 813, 897
BsmFI	GGGAC	2 cut(s)	694, 799
BsmI	GAATGC	3 cut(s)	663, 948, 955
BsnI	GGCC	1 cut(s)	973
BsoBI	CYCGRG	1 cut(s)	816
Bsp143I	GATC	3 cut(s)	61, 891, 1129
BspACI	CCGC	1 cut(s)	614
BspANI	GGCC	1 cut(s)	973
BspCNI	CTCAG	2 cut(s)	85, 167
BspHI	TCATGA	1 cut(s)	978
BspLI	GGNNCC	1 cut(s)	334
BspPI	GGATC	2 cut(s)	899, 1124
BspQI	GCTCTTC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	991
BsrI	ACTGG	3 cut(s)	71, 811, 827
BssECI	CCNNGG	2 cut(s)	87, 336
BssMI	GATC	3 cut(s)	61, 891, 1129
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	749
Bst6I	CTCTTC	2 cut(s)	303, 891
BstDEI	CTNAG	7 cut(s)	93, 119, 154, 297, 606, 831, 865
BstF5I	GGATG	3 cut(s)	595, 717, 930
BstHHI	GCGC	2 cut(s)	885, 994
BstKTI	GATC	3 cut(s)	64, 894, 1132
BstMAI	GTCTC	3 cut(s)	49, 813, 897
BstMBI	GATC	3 cut(s)	61, 891, 1129
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	2 cut(s)	491, 850
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	187
BstV1I	GCAGC	2 cut(s)	471, 707
BstV2I	GAAGAC	1 cut(s)	793
BstXI	CCANNNNNNTGG	1 cut(s)	708
Bsu36I	CCTNAGG	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	973
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	3 cut(s)	595, 717, 930
BtsI	GCAGTG	2 cut(s)	51, 790
BtsIMutI	CAGTG	3 cut(s)	51, 460, 790
CciI	TCATGA	1 cut(s)	978
CfoI	GCGC	2 cut(s)	885, 994
Cfr13I	GGNCC	1 cut(s)	274
Csp6I	GTAC	4 cut(s)	257, 418, 581, 1104
CspCI	CAANNNNNGTGG	2 cut(s)	1108, 1143
CviAII	CATG	9 cut(s)	59, 127, 421, 488, 530, 840, 847, 979, 1151
CviQI	GTAC	4 cut(s)	257, 418, 581, 1104
DdeI	CTNAG	7 cut(s)	93, 119, 154, 297, 606, 831, 865
DpnI	GATC	3 cut(s)	63, 893, 1131
DpnII	GATC	3 cut(s)	61, 891, 1129
Eam1104I	CTCTTC	2 cut(s)	303, 891
EarI	CTCTTC	2 cut(s)	303, 891
Eco130I	CCWWGG	1 cut(s)	336
Eco147I	AGGCCT	1 cut(s)	973
Eco47I	GGWCC	1 cut(s)	274
Eco81I	CCTNAGG	1 cut(s)	606
Eco88I	CYCGRG	1 cut(s)	816
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	9 cut(s)	62, 130, 424, 491, 533, 843, 850, 982, 1154
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	2 cut(s)	694, 799
FatI	CATG	9 cut(s)	58, 126, 420, 487, 529, 839, 846, 978, 1150
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	485, 696
FokI	GGATG	3 cut(s)	602, 724, 937
Fsp4HI	GCNGC	2 cut(s)	485, 696
FspBI	CTAG	3 cut(s)	1101, 1140, 1163
GlaI	GCGC	2 cut(s)	884, 993
GluI	GCNGC	2 cut(s)	485, 696
HaeIII	GGCC	1 cut(s)	973
HhaI	GCGC	2 cut(s)	885, 994
Hin1II	CATG	9 cut(s)	62, 130, 424, 491, 533, 843, 850, 982, 1154
Hin6I	GCGC	2 cut(s)	883, 992
HinP1I	GCGC	2 cut(s)	883, 992
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	6 cut(s)	26, 83, 369, 601, 624, 727
HphI	GGTGA	1 cut(s)	951
Hpy166II	GTNNAC	5 cut(s)	49, 412, 542, 745, 837
Hpy188I	TCNGA	1 cut(s)	677
Hpy188III	TCNNGA	5 cut(s)	245, 437, 587, 816, 979
Hpy8I	GTNNAC	5 cut(s)	49, 412, 542, 745, 837
Hpy99I	CGWCG	1 cut(s)	800
HpyCH4III	ACNGT	1 cut(s)	749
HpyCH4IV	ACGT	1 cut(s)	354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	7 cut(s)	93, 119, 154, 297, 606, 831, 865
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	9 cut(s)	62, 130, 424, 491, 533, 843, 850, 982, 1154
HspAI	GCGC	2 cut(s)	883, 992
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 891, 1129
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	666
Lsp1109I	GCAGC	2 cut(s)	471, 707
LweI	GCATC	2 cut(s)	702, 1121
MaeI	CTAG	3 cut(s)	1101, 1140, 1163
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	3 cut(s)	8, 455, 724
MalI	GATC	3 cut(s)	63, 893, 1131
MboI	GATC	3 cut(s)	61, 891, 1129
MboII	GAAGA	7 cut(s)	320, 354, 752, 792, 795, 798, 908
MluCI	AATT	8 cut(s)	65, 165, 173, 670, 802, 1017, 1066, 1155
MlyI	GAGTC	3 cut(s)	363, 618, 721
MmeI	TCCRAC	5 cut(s)	54, 125, 310, 757, 981
MnlI	CCTC	8 cut(s)	416, 526, 638, 671, 915, 984, 997, 1038
MseI	TTAA	2 cut(s)	567, 929
MslI	CAYNNNNRTG	2 cut(s)	735, 1140
MspA1I	CMGCKG	1 cut(s)	686
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	3 cut(s)	663, 948, 955
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	692
NdeII	GATC	3 cut(s)	61, 891, 1129
NlaIII	CATG	9 cut(s)	62, 130, 424, 491, 533, 843, 850, 982, 1154
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	2 cut(s)	455, 724
NspI	RCATGY	2 cut(s)	491, 850
OliI	CACNNNNGTG	2 cut(s)	735, 1140
PagI	TCATGA	1 cut(s)	978
PceI	AGGCCT	1 cut(s)	973
PciI	ACATGT	1 cut(s)	846
PciSI	GCTCTTC	1 cut(s)	303
PctI	GAATGC	3 cut(s)	663, 948, 955
PfeI	GAWTC	3 cut(s)	26, 83, 601
PkrI	GCNGC	2 cut(s)	486, 697
PleI	GAGTC	3 cut(s)	363, 618, 721
PpsI	GAGTC	3 cut(s)	363, 618, 721
PpuMI	RGGWCCY	1 cut(s)	274
PscI	ACATGT	1 cut(s)	846
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	1 cut(s)	274
PspPPI	RGGWCCY	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	4 cut(s)	258, 419, 582, 1105
RsaNI	GTAC	4 cut(s)	257, 418, 581, 1104
RseI	CAYNNNNRTG	2 cut(s)	735, 1140
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	567, 929
SatI	GCNGC	2 cut(s)	485, 696
Sau3AI	GATC	3 cut(s)	61, 891, 1129
Sau96I	GGNCC	1 cut(s)	274
ScaI	AGTACT	1 cut(s)	1105
SchI	GAGTC	3 cut(s)	363, 618, 721
ScrFI	CCNGG	1 cut(s)	89
SfaNI	GCATC	2 cut(s)	702, 1121
SfcI	CTRYAG	1 cut(s)	187
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	2 cut(s)	735, 1140
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
SpeI	ACTAGT	1 cut(s)	1100
Sse9I	AATT	8 cut(s)	65, 165, 173, 670, 802, 1017, 1066, 1155
SseBI	AGGCCT	1 cut(s)	973
SsiI	CCGC	1 cut(s)	614
SspMI	CTAG	3 cut(s)	1101, 1140, 1163
StuI	AGGCCT	1 cut(s)	973
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	749
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	4 cut(s)	246, 655, 894, 1170
TasI	AATT	8 cut(s)	65, 165, 173, 670, 802, 1017, 1066, 1155
TatI	WGTACW	4 cut(s)	256, 417, 580, 1103
TfiI	GAWTC	3 cut(s)	26, 83, 601
Tru1I	TTAA	2 cut(s)	567, 929
Tru9I	TTAA	2 cut(s)	567, 929
TscAI	CASTG	3 cut(s)	51, 460, 797
TseFI	GTSAC	2 cut(s)	455, 724
TseI	GCWGC	2 cut(s)	484, 695
Tsp45I	GTSAC	2 cut(s)	455, 724
TspDTI	ATGAA	2 cut(s)	413, 1167
TspRI	CASTG	3 cut(s)	51, 460, 797
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	2 cut(s)	173, 1066
XceI	RCATGY	2 cut(s)	491, 850
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	3 cut(s)	1101, 1140, 1163
ZrmI	AGTACT	1 cut(s)	1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.