Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003270

Physical Location & Seq

Genomic Coordinates Forward (+)

54112740 .. 54114292

Gene Structure 1553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030051

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGAGCTCCGAAGATGACTTCTTCAATAACAGTGTCAAAGATTTCGATTCCGTATTCAAAACGGCTGTTGTTGCTTCTGTTGTTTCTTCTGTGGTGATGATCATTGCTGTTACAGCCATTGTATATGCCATTATTAACTGCTTGAAAAATTATGGAAATCCTATTGCAAAATATGCCCGGGTAACAAGTAGTAACGATACCGACAACGATTCCAACAACGTAGAAGTGGACTTCAGATGCGATCAATTTCCAGTAGCTCTTGATTCCCAGGCTGAGTTTCCGACAATCAAAGAGTTCCTTAGCAACATGGCAAGAGAGAAGCCTATAACTTACTCAGCAAAGCAAATTGCAGAATTCACACATGACTATAGCTACTCCAACATTTTAGGTTCAGGTGGTTTTGGAGTAGTATATAAAGGGCTTCTTGAAAATGGAGTACACGTGGCTGTCAAGGTCCTCACCAACAACCATAGGGCAAAGATAGTTGAAGAGCAGTTTATGGCAGAAGTTGGAACCCTGGGAAGAACTTACCATGTCAATCTGGTTAGACTCTACGGCTTCTGCTTCACCTCCGAAATGAAAGCCCTTGTCTACGAGTACATGGAAAATGGTTCTCTTGACAAATTATTGTTCGGTGACAATGGAGAAGTAGATTTAGAGAAGCTTCATGAAATTGCAGTCCAAACTGCGAAAGGTTTGGCTTATTTGCATGAGGAGTGTGAACAAAAAATCATTCACTATGATATTAAGCCCGAAAATGTGCTTCTTGATGAGAACCTTAATCCCAAGGTTGCAGATTTTGGACTCGCCAAGCTTTGCAATAGAGGGAATAGTGAAATGCTCCTAACCAATTTCAGAGGAACAGCCGGATATGCAGCCCCAGAGATGTGGAAGCCTTATCCAGTGACTCACAAATGTGATGTTTACAGTTTTGGTATTCTTCTCTTTGAGATTGTTGGAAGAAGAAGACACTGCGACGATAATGTGAGCGAGTCCCGGGACTGGCTACCTAAGTGGACATGGAACATGTTTGAGAAAAATAACTTAGCAGCACTATTATTGCGCTGTGGGATCGAAGAGAGAGACAGGGGAAAAGCTGAGAGGATGTTACTGATAGCTTTGTGGTGCATTCAGCATTCACCAGAAGCGAGACCTCTCATGAGCAATGTAGTGCAAATGTTGGAGGGGCATAAAGAAATTACTCCACCTCCTTGCCCCTTTGAACATTTGCAATCTCCGCAACTAAATTTCAGTCAAAATAGTGGAACAGATGACGACAATAGTACTTCTGCATCAGGCACACTTACTGATCCACGCCATTTTTTAAGTGCTGCACATGAAATTGAGCTAGTTGTCGTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

455

Amino Acids

51.08

Weight (kDa)

5.17

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	123 - 392	4.8e-49	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	126 - 394	1.7e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22030 FvH4_4g22030
malus_domestica	MD02G1307500.v1.1 MD07G1018100.v1.1
prunus_persica	Prupe.3G089700_v2.0.a1 Prupe.3G089700_v2.0.a1
pyrus_communis	pycom07g01390
rosa_chinensis	RchiOBHm_Chr1g0326751 RchiOBHm_Chr1g0326841 RchiOBHm_Chr1g0326851 RchiOBHm_Chr1g0326921
rosa_laevigata	RLG00000030051 RLG00000030053 RLG00000030059
rosa_multiflora	Rmu_sc0000842.1_g000010 Rmu_sc0000842.1_g000033 Rmu_sc0000842.1_g000035 Rmu_sc0003315.1_g000010 Rmu_sc0003315.1_g000016 Rmu_sc0003315.1_g000020 Rmu_sc0005098.1_g000011 Rmu_sc0017564.1_g000001 Rmu_sc0017869.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323520 Rroxscaffold_4G00323540 Rroxscaffold_4G00323560
rosa_rugosa	Rorug01G0061700 Rorug01G0062000
rosa_samantha	Rh1AG078300 Rh1AG079000 Rh1AG079200 Rh1AG079300 Rh1CG076900 Rh1DG083300
rosa_wichuraiana	Rw1G006260 Rw1G006270 Rw1G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	591
AciI	CCGC	1 cut(s)	1238
AclWI	GGATC	2 cut(s)	1079, 1304
AcsI	RAATTY	2 cut(s)	353, 1246
AcuI	CTGAAG	1 cut(s)	217
AcvI	CACGTG	1 cut(s)	442
AfaI	GTAC	3 cut(s)	438, 599, 1285
AfiI	CCNNNNNNNGG	1 cut(s)	1002
AflIII	ACRYGT	2 cut(s)	439, 1026
AgsI	TTSAA	6 cut(s)	25, 58, 145, 428, 488, 1223
AjnI	CCWGG	2 cut(s)	267, 516
AleI	CACNNNNGTG	1 cut(s)	915
AluBI	AGCT	8 cut(s)	6, 257, 372, 664, 814, 1097, 1118, 1348
AluI	AGCT	8 cut(s)	6, 257, 372, 664, 814, 1097, 1118, 1348
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	1077, 1144
AlwI	GGATC	2 cut(s)	1079, 1304
Ama87I	CYCGRG	2 cut(s)	177, 996
ApeKI	GCWGC	3 cut(s)	875, 1049, 1331
ApoI	RAATTY	2 cut(s)	353, 1246
AspLEI	GCGC	1 cut(s)	1065
AspS9I	GGNCC	1 cut(s)	454
AsuC2I	CCSGG	4 cut(s)	178, 179, 997, 998
AsuHPI	GGTGA	5 cut(s)	106, 451, 559, 647, 1131
AvaI	CYCGRG	2 cut(s)	177, 996
AvaII	GGWCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	8
BbrPI	CACGTG	1 cut(s)	442
BbsI	GAAGAC	1 cut(s)	973
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	887, 1061, 1318
BceAI	ACGGC	2 cut(s)	78, 571
BciT130I	CCWGG	2 cut(s)	269, 518
BclI	TGATCA	1 cut(s)	99
BcnI	CCSGG	4 cut(s)	178, 179, 997, 998
BcoDI	GTCTC	2 cut(s)	1077, 1144
BfaI	CTAG	1 cut(s)	1349
BfmI	CTRYAG	1 cut(s)	367
BisI	GCNGC	3 cut(s)	876, 1050, 1332
BlsI	GCNGC	3 cut(s)	877, 1051, 1333
BmcAI	AGTACT	1 cut(s)	1285
Bme1390I	CCNGG	6 cut(s)	178, 179, 269, 518, 997, 998
Bme18I	GGWCC	1 cut(s)	454
BmeT110I	CYCGRG	2 cut(s)	177, 996
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	6 cut(s)	178, 179, 269, 518, 997, 998
BmsI	GCATC	2 cut(s)	227, 1301
BpiI	GAAGAC	1 cut(s)	973
Bpu10I	CCTNAGC	1 cut(s)	299
BpuMI	CCSGG	4 cut(s)	178, 179, 997, 998
BsaAI	YACGTR	1 cut(s)	442
BsaI	GGTCTC	1 cut(s)	1144
BsaJI	CCNNGG	6 cut(s)	177, 267, 516, 517, 786, 996
BsaXI	ACNNNNNCTCC	4 cut(s)	426, 456, 1192, 1222
Bsc4I	CCNNNNNNNGG	1 cut(s)	1002
Bse1I	ACTGG	3 cut(s)	251, 902, 1007
Bse3DI	GCAATG	2 cut(s)	102, 1171
BseBI	CCWGG	2 cut(s)	269, 518
BseDI	CCNNGG	6 cut(s)	177, 267, 516, 517, 786, 996
BseGI	GGATG	1 cut(s)	1110
BseLI	CCNNNNNNNGG	1 cut(s)	1002
BseMI	GCAATG	2 cut(s)	102, 1171
BseMII	CTCAG	3 cut(s)	264, 348, 1089
BseNI	ACTGG	3 cut(s)	251, 902, 1007
BseRI	GAGGAG	1 cut(s)	728
BseXI	GCAGC	3 cut(s)	887, 1061, 1318
BsgI	GTGCAG	1 cut(s)	1317
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	2 cut(s)	177, 996
BsiSI	CCGG	3 cut(s)	178, 867, 997
BslFI	GGGAC	2 cut(s)	979, 1013
BslI	CCNNNNNNNGG	1 cut(s)	1002
BsmAI	GTCTC	2 cut(s)	1077, 1144
BsmFI	GGGAC	2 cut(s)	979, 1013
BsmI	GAATGC	2 cut(s)	1128, 1135
Bso31I	GGTCTC	1 cut(s)	1144
BsoBI	CYCGRG	2 cut(s)	177, 996
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	99, 241, 1071, 1309
BspACI	CCGC	1 cut(s)	1238
BspCNI	CTCAG	3 cut(s)	265, 347, 1090
BspHI	TCATGA	2 cut(s)	667, 1158
BspLI	GGNNCC	1 cut(s)	514
BspPI	GGATC	2 cut(s)	1079, 1304
BspQI	GCTCTTC	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	1144
BsrDI	GCAATG	2 cut(s)	102, 1171
BsrI	ACTGG	3 cut(s)	251, 902, 1007
BssECI	CCNNGG	6 cut(s)	177, 267, 516, 517, 786, 996
BssMI	GATC	4 cut(s)	99, 241, 1071, 1309
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	2 cut(s)	269, 518
Bst4CI	ACNGT	2 cut(s)	32, 929
Bst6I	CTCTTC	2 cut(s)	483, 1071
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	442
BstDEI	CTNAG	6 cut(s)	273, 299, 334, 1011, 1045, 1098
BstF5I	GGATG	1 cut(s)	1110
BstHHI	GCGC	1 cut(s)	1065
BstKTI	GATC	4 cut(s)	102, 244, 1074, 1312
BstMAI	GTCTC	2 cut(s)	1077, 1144
BstMBI	GATC	4 cut(s)	99, 241, 1071, 1309
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 113, 173, 872, 1237
BstNI	CCWGG	2 cut(s)	269, 518
BstNSI	RCATGY	1 cut(s)	1030
BstSCI	CCNGG	6 cut(s)	176, 177, 267, 516, 995, 996
BstSFI	CTRYAG	1 cut(s)	367
BstV1I	GCAGC	3 cut(s)	887, 1061, 1318
BstV2I	GAAGAC	1 cut(s)	973
BstXI	CCANNNNNNTGG	1 cut(s)	888
BtsCI	GGATG	1 cut(s)	1110
BtsI	GCAGTG	1 cut(s)	970
BtsIMutI	CAGTG	3 cut(s)	37, 909, 970
CciI	TCATGA	2 cut(s)	667, 1158
CfoI	GCGC	1 cut(s)	1065
Cfr13I	GGNCC	1 cut(s)	454
Cfr9I	CCCGGG	2 cut(s)	177, 996
Csp6I	GTAC	3 cut(s)	437, 598, 1284
CviQI	GTAC	3 cut(s)	437, 598, 1284
DdeI	CTNAG	6 cut(s)	273, 299, 334, 1011, 1045, 1098
DpnI	GATC	4 cut(s)	101, 243, 1073, 1311
DpnII	GATC	4 cut(s)	99, 241, 1071, 1309
Eam1104I	CTCTTC	2 cut(s)	483, 1071
EarI	CTCTTC	2 cut(s)	483, 1071
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	786
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	1144
Eco47I	GGWCC	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	217
Eco72I	CACGTG	1 cut(s)	442
Eco88I	CYCGRG	2 cut(s)	177, 996
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	267, 516
EcoT14I	CCWWGG	1 cut(s)	786
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	786
FalI	AAGNNNNNCTT	4 cut(s)	282, 314, 408, 440
FaqI	GGGAC	2 cut(s)	979, 1013
FbaI	TGATCA	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	3 cut(s)	876, 1050, 1332
FokI	GGATG	1 cut(s)	1117
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	876, 1050, 1332
FspBI	CTAG	1 cut(s)	1349
GlaI	GCGC	1 cut(s)	1064
GluI	GCNGC	3 cut(s)	876, 1050, 1332
HapII	CCGG	3 cut(s)	178, 867, 997
HhaI	GCGC	1 cut(s)	1065
Hin6I	GCGC	1 cut(s)	1063
HinP1I	GCGC	1 cut(s)	1063
HindIII	AAGCTT	2 cut(s)	662, 812
HinfI	GANTC	7 cut(s)	47, 209, 263, 549, 804, 907, 992
HpaII	CCGG	3 cut(s)	178, 867, 997
HphI	GGTGA	5 cut(s)	106, 451, 559, 647, 1131
Hpy166II	GTNNAC	6 cut(s)	229, 439, 592, 722, 925, 1017
Hpy188I	TCNGA	5 cut(s)	10, 236, 282, 574, 857
Hpy188III	TCNNGA	6 cut(s)	260, 425, 617, 668, 767, 1159
Hpy8I	GTNNAC	6 cut(s)	229, 439, 592, 722, 925, 1017
Hpy99I	CGWCG	1 cut(s)	980
HpyCH4III	ACNGT	2 cut(s)	32, 929
HpyCH4IV	ACGT	2 cut(s)	219, 441
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 113, 173, 872, 1237
HpyF3I	CTNAG	6 cut(s)	273, 299, 334, 1011, 1045, 1098
HpySE526I	ACGT	2 cut(s)	219, 441
HspAI	GCGC	1 cut(s)	1063
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	4 cut(s)	99, 241, 1071, 1309
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	2 cut(s)	11, 846
Lsp1109I	GCAGC	3 cut(s)	887, 1061, 1318
LweI	GCATC	2 cut(s)	227, 1301
MaeI	CTAG	1 cut(s)	1349
MaeII	ACGT	2 cut(s)	219, 441
MaeIII	GTNAC	6 cut(s)	109, 181, 191, 635, 904, 1107
MalI	GATC	4 cut(s)	101, 243, 1073, 1311
MboI	GATC	4 cut(s)	99, 241, 1071, 1309
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	4 cut(s)	543, 798, 901, 1001
MmeI	TCCRAC	6 cut(s)	237, 305, 402, 490, 937, 1161
MnlI	CCTC	9 cut(s)	467, 580, 706, 818, 851, 1095, 1164, 1177, 1218
MseI	TTAA	4 cut(s)	135, 747, 780, 1325
MslI	CAYNNNNRTG	1 cut(s)	915
MspI	CCGG	3 cut(s)	178, 867, 997
MspR9I	CCNGG	6 cut(s)	178, 179, 269, 518, 997, 998
Mva1269I	GAATGC	2 cut(s)	1128, 1135
MvaI	CCWGG	2 cut(s)	269, 518
MwoI	GCNNNNNNNGC	5 cut(s)	71, 113, 173, 872, 1237
NciI	CCSGG	4 cut(s)	178, 179, 997, 998
NdeII	GATC	4 cut(s)	99, 241, 1071, 1309
NlaIV	GGNNCC	1 cut(s)	514
NmuCI	GTSAC	2 cut(s)	635, 904
NspI	RCATGY	1 cut(s)	1030
OliI	CACNNNNGTG	1 cut(s)	915
PagI	TCATGA	2 cut(s)	667, 1158
PasI	CCCWGGG	1 cut(s)	517
PciI	ACATGT	1 cut(s)	1026
PciSI	GCTCTTC	1 cut(s)	483
PctI	GAATGC	2 cut(s)	1128, 1135
PfeI	GAWTC	3 cut(s)	47, 209, 263
PkrI	GCNGC	3 cut(s)	877, 1051, 1333
PleI	GAGTC	4 cut(s)	543, 798, 901, 1000
PmaCI	CACGTG	1 cut(s)	442
PmlI	CACGTG	1 cut(s)	442
PpsI	GAGTC	4 cut(s)	543, 798, 901, 1000
Ppu21I	YACGTR	1 cut(s)	442
PpuMI	RGGWCCY	1 cut(s)	454
PscI	ACATGT	1 cut(s)	1026
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	454
Psp6I	CCWGG	2 cut(s)	267, 516
PspCI	CACGTG	1 cut(s)	442
PspGI	CCWGG	2 cut(s)	267, 516
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	1 cut(s)	454
PspPPI	RGGWCCY	1 cut(s)	454
RsaI	GTAC	3 cut(s)	438, 599, 1285
RsaNI	GTAC	3 cut(s)	437, 598, 1284
RseI	CAYNNNNRTG	1 cut(s)	915
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	4 cut(s)	135, 747, 780, 1325
SatI	GCNGC	3 cut(s)	876, 1050, 1332
Sau3AI	GATC	4 cut(s)	99, 241, 1071, 1309
Sau96I	GGNCC	1 cut(s)	454
ScaI	AGTACT	1 cut(s)	1285
SchI	GAGTC	4 cut(s)	543, 798, 901, 1001
ScrFI	CCNGG	6 cut(s)	178, 179, 269, 518, 997, 998
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	227, 1301
SfcI	CTRYAG	1 cut(s)	367
SinI	GGWCC	1 cut(s)	454
SmaI	CCCGGG	2 cut(s)	179, 998
SmiMI	CAYNNNNRTG	1 cut(s)	915
SsiI	CCGC	1 cut(s)	1238
SspMI	CTAG	1 cut(s)	1349
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	6 cut(s)	176, 177, 267, 516, 995, 996
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	2 cut(s)	32, 929
TaiI	ACGT	2 cut(s)	222, 444
TaqI	TCGA	2 cut(s)	45, 1074
TatI	WGTACW	3 cut(s)	436, 597, 1283
TfiI	GAWTC	3 cut(s)	47, 209, 263
Tru1I	TTAA	4 cut(s)	135, 747, 780, 1325
Tru9I	TTAA	4 cut(s)	135, 747, 780, 1325
TscAI	CASTG	3 cut(s)	37, 909, 977
TseFI	GTSAC	2 cut(s)	635, 904
TseI	GCWGC	3 cut(s)	875, 1049, 1331
Tsp45I	GTSAC	2 cut(s)	635, 904
TspDTI	ATGAA	4 cut(s)	593, 656, 684, 1353
TspGWI	ACGGA	1 cut(s)	40
TspMI	CCCGGG	2 cut(s)	177, 996
TspRI	CASTG	3 cut(s)	37, 909, 977
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	2 cut(s)	353, 1246
XceI	RCATGY	1 cut(s)	1030
XmaI	CCCGGG	2 cut(s)	177, 996
XmiI	GTMKAC	1 cut(s)	591
XspI	CTAG	1 cut(s)	1349
ZrmI	AGTACT	1 cut(s)	1285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.