Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001761

Physical Location & Seq

Genomic Coordinates Reverse (-)

27015918 .. 27017723

Gene Structure 1806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g25120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGGTCGACATCGTCTAATTGCCGGAGCTATCCTCATCTTCACCTTGTTCACCGGTGTCATCTTTCCCTCCGATGCTCAGGGAGAAGGCAATGGGAACGGCTTAACTGTCGGGTTTTATGCTTCAAGTTGCCCCAAGGTTGAAGACATTGTTACGGAGGTTGTAGCTCGATTATCGAAGCAAGATCCCACGCTCCCTCCTGCTCTCCTCCGCCTCTTTTTCCATGATTGCTTTGTCAAGGGTTGTGATGCCTCAGTCCTGTTAGACGAAACACCATCTGGTCAGCCTGTAGAGAAAAAATCAGCAGGCAATGGTGACACAATTAGAGGTCTTGAGGTCATTGATGAGATAAAGACTCAGGTCGAGAAAGAGTGCCCCAAAACTGTATCCTGCGCTGACATATTAGCATTTGCTGCTAGAGAAGCCGTTAATCTCTCCGGCCTACCCCGTCACACAGTCCCAGCCGGTCGCCATGACAGTAGGACTTCCCGTGCTTCTGATGCCGACTACTACCTTCCTACACCTGCAATGCCTCTAGAAAAGATTATTGCTATGTTCGCCGAAAGAAACCTGACAATAGAAGATATGGTTGTCTTGTTAGGCGCACATTCCATGGGTCAAGCACATTGCACCCAATTTACAGACAGACTATACAAATTTAACAAAGATACTCCCCGGGACCCTTCCCTGAACGCAATATATGGTAATGAGCTAGCCGGAAAATGCCCGGAAGCAATGTCTAAGGAGCAAGCATCACGTACCACGGTGGACTTGGATCCGACGACACCCCGTGTCCTCGACATTCAGTATTATGTGAACCTGTTGCAAGGGAGAGGCTTGCTTCAATCGGATCAAGTACTTTCTACAGATTCCCGCACCGGAGGCATTGTGAACGCAATGGCTGCTAGCTCTGATACTTGGAGTACAAAATTTCTCAGGGCCATAATCAAGATGGGGAGATCAAATGTTCTCACCGAAGATGAAGGAGAGATTAGAACAAATTGCCGGAACTATCTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

341

Amino Acids

37.12

Weight (kDa)

5.76

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	51 - 302	4.4e-80	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001761)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25120 FvH4_4g25140
malus_domestica	MD13G1097600.v1.1 MD13G1097700.v1.1 MD16G1098700.v1.1 MD16G1098800.v1.1
prunus_persica	Prupe.1G247700_v2.0.a1 Prupe.1G247800_v2.0.a1
pyrus_communis	pycom13g08540
rosa_chinensis	RchiOBHm_Chr4g0432321 RchiOBHm_Chr4g0432331 RchiOBHm_Chr4g0433321 RchiOBHm_Chr4g0433341
rosa_laevigata	RLG00000001640 RLG00000006762 RLG00000006763 RLG00000006853
rosa_multiflora	Rmu_co8257897.1_g000001 Rmu_co8369943.1_g000001 Rmu_sc0000354.1_g000009 Rmu_sc0000354.1_g000012 Rmu_sc0001772.1_g000035
rosa_roxburghii	Rroxscaffold_3G00232110 Rroxscaffold_5G00374880 Rroxscaffold_5G00374910
rosa_rugosa	Rorug04G0257100 Rorug04G0268000
rosa_samantha	Rh4AG313300 Rh4AG322600 Rh4AG322700 Rh4BG320900 Rh4BG330100 Rh4BG330200 Rh4CG336100 Rh4CG345500 Rh4CG345600 Rh4CG345800 Rh4DG316400 Rh4DG316500 Rh4DG326800 Rh4DG326900 Rh7AG394400
rosa_wichuraiana	Rw0G000490 Rw0G023850 Rw4G027240 Rw4G027920 Rw4G027930 Rw7G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	532
AccI	GTMKAC	1 cut(s)	7
AciI	CCGC	2 cut(s)	211, 874
AclWI	GGATC	4 cut(s)	179, 770, 783, 858
AcsI	RAATTY	2 cut(s)	656, 929
AdeI	CACNNNGTG	1 cut(s)	791
AfaI	GTAC	3 cut(s)	760, 858, 925
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	126, 143, 845
AluBI	AGCT	4 cut(s)	29, 167, 712, 909
AluI	AGCT	4 cut(s)	29, 167, 712, 909
AlwI	GGATC	4 cut(s)	179, 770, 783, 858
Ama87I	CYCGRG	1 cut(s)	675
AoxI	GGCC	2 cut(s)	439, 939
ApeKI	GCWGC	2 cut(s)	413, 902
ApoI	RAATTY	2 cut(s)	656, 929
AsiGI	ACCGGT	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	395, 605
AspS9I	GGNCC	2 cut(s)	679, 939
AsuC2I	CCSGG	3 cut(s)	676, 677, 728
AsuHPI	GGTGA	4 cut(s)	34, 43, 326, 964
AsuNHI	GCTAGC	2 cut(s)	712, 905
AvaI	CYCGRG	1 cut(s)	675
AvaII	GGWCC	1 cut(s)	679
BaeGI	GKGCMC	1 cut(s)	377
BamHI	GGATCC	1 cut(s)	775
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	400, 889
BccI	CCATC	2 cut(s)	283, 946
BceAI	ACGGC	2 cut(s)	115, 410
BciVI	GTATCC	1 cut(s)	397
BcnI	CCSGG	3 cut(s)	676, 677, 728
BfaI	CTAG	4 cut(s)	417, 536, 713, 906
BfmI	CTRYAG	2 cut(s)	288, 864
BfuAI	ACCTGC	1 cut(s)	532
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	2 cut(s)	414, 903
BlsI	GCNGC	2 cut(s)	415, 904
BmcAI	AGTACT	1 cut(s)	858
Bme1390I	CCNGG	3 cut(s)	676, 677, 728
Bme18I	GGWCC	1 cut(s)	679
BmeT110I	CYCGRG	1 cut(s)	675
BmgT120I	GGNCC	2 cut(s)	679, 939
BmiI	GGNNCC	3 cut(s)	680, 681, 777
BmrFI	CCNGG	3 cut(s)	676, 677, 728
BmsI	GCATC	4 cut(s)	64, 238, 490, 761
BmtI	GCTAGC	2 cut(s)	716, 909
BoxI	GACNNNNGTC	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	18, 50
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	3 cut(s)	676, 677, 728
BsaAI	YACGTR	1 cut(s)	758
BsaJI	CCNNGG	5 cut(s)	135, 612, 674, 675, 762
BsaWI	WCCGGW	2 cut(s)	53, 878
BsaXI	ACNNNNNCTCC	4 cut(s)	181, 211, 873, 903
Bse118I	RCCGGY	2 cut(s)	53, 464
Bse3DI	GCAATG	6 cut(s)	97, 316, 534, 625, 741, 903
BseDI	CCNNGG	5 cut(s)	135, 612, 674, 675, 762
BseMI	GCAATG	6 cut(s)	97, 316, 534, 625, 741, 903
BseMII	CTCAG	4 cut(s)	92, 267, 371, 949
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	400, 889
BseYI	CCCAGC	1 cut(s)	460
Bsh1285I	CGRYCG	1 cut(s)	469
BshFI	GGCC	2 cut(s)	441, 941
BshTI	ACCGGT	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	469
BsiHKCI	CYCGRG	1 cut(s)	675
BsiSI	CCGG	9 cut(s)	24, 54, 438, 465, 676, 717, 728, 879, 1006
BslFI	GGGAC	2 cut(s)	443, 692
BsmFI	GGGAC	2 cut(s)	443, 692
BsnI	GGCC	2 cut(s)	441, 941
BsoBI	CYCGRG	1 cut(s)	675
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	4 cut(s)	184, 775, 850, 959
Bsp19I	CCATGG	1 cut(s)	612
BspACI	CCGC	2 cut(s)	211, 874
BspANI	GGCC	2 cut(s)	441, 941
BspCNI	CTCAG	4 cut(s)	91, 266, 370, 948
BspLI	GGNNCC	3 cut(s)	680, 681, 777
BspMI	ACCTGC	1 cut(s)	532
BspOI	GCTAGC	2 cut(s)	716, 909
BspPI	GGATC	4 cut(s)	179, 770, 783, 858
BsrDI	GCAATG	6 cut(s)	97, 316, 534, 625, 741, 903
BsrFI	RCCGGY	2 cut(s)	53, 464
BssAI	RCCGGY	2 cut(s)	53, 464
BssECI	CCNNGG	5 cut(s)	135, 612, 674, 675, 762
BssMI	GATC	4 cut(s)	184, 775, 850, 959
BssT1I	CCWWGG	2 cut(s)	135, 612
Bst4CI	ACNGT	5 cut(s)	109, 385, 457, 479, 766
BstAPI	GCANNNNNTGC	2 cut(s)	413, 902
BstBAI	YACGTR	1 cut(s)	758
BstC8I	GCNNGC	5 cut(s)	307, 714, 750, 839, 907
BstDEI	CTNAG	5 cut(s)	78, 253, 357, 741, 935
BstDSI	CCRYGG	2 cut(s)	612, 762
BstHHI	GCGC	2 cut(s)	395, 605
BstKTI	GATC	4 cut(s)	187, 778, 853, 962
BstMBI	GATC	4 cut(s)	184, 775, 850, 959
BstMCI	CGRYCG	1 cut(s)	469
BstMWI	GCNNNNNNNGC	6 cut(s)	413, 422, 500, 557, 882, 902
BstPAI	GACNNNNGTC	1 cut(s)	359
BstSCI	CCNGG	3 cut(s)	674, 675, 726
BstSFI	CTRYAG	2 cut(s)	288, 864
BstSLI	GKGCMC	1 cut(s)	377
BstV1I	GCAGC	2 cut(s)	400, 889
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	184, 775
BstYI	RGATCY	2 cut(s)	184, 775
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	441, 941
BtgI	CCRYGG	2 cut(s)	612, 762
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	5 cut(s)	307, 714, 750, 839, 907
CfoI	GCGC	2 cut(s)	395, 605
Cfr10I	RCCGGY	2 cut(s)	53, 464
Cfr13I	GGNCC	2 cut(s)	679, 939
Cfr9I	CCCGGG	1 cut(s)	675
Csp6I	GTAC	3 cut(s)	759, 857, 924
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	3 cut(s)	224, 473, 613
CviQI	GTAC	3 cut(s)	759, 857, 924
DdeI	CTNAG	5 cut(s)	78, 253, 357, 741, 935
DpnI	GATC	4 cut(s)	186, 777, 852, 961
DpnII	GATC	4 cut(s)	184, 775, 850, 959
DraIII	CACNNNGTG	1 cut(s)	791
EciI	GGCGGA	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	135, 612
Eco47I	GGWCC	1 cut(s)	679
Eco88I	CYCGRG	1 cut(s)	675
EcoO109I	RGGNCCY	1 cut(s)	679
EcoT14I	CCWWGG	2 cut(s)	135, 612
ErhI	CCWWGG	2 cut(s)	135, 612
FaeI	CATG	3 cut(s)	227, 476, 616
FaqI	GGGAC	2 cut(s)	443, 692
FatI	CATG	3 cut(s)	223, 472, 612
FauI	CCCGC	1 cut(s)	881
FblI	GTMKAC	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	414, 903
Fsp4HI	GCNGC	2 cut(s)	414, 903
FspBI	CTAG	4 cut(s)	417, 536, 713, 906
GlaI	GCGC	2 cut(s)	394, 604
GluI	GCNGC	2 cut(s)	414, 903
GsaI	CCCAGC	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	441, 941
HapII	CCGG	9 cut(s)	24, 54, 438, 465, 676, 717, 728, 879, 1006
HhaI	GCGC	2 cut(s)	395, 605
Hin1II	CATG	3 cut(s)	227, 476, 616
Hin6I	GCGC	2 cut(s)	393, 603
HinP1I	GCGC	2 cut(s)	393, 603
HincII	GTYRAC	1 cut(s)	8
HindII	GTYRAC	1 cut(s)	8
HinfI	GANTC	2 cut(s)	355, 869
HpaII	CCGG	9 cut(s)	24, 54, 438, 465, 676, 717, 728, 879, 1006
HphI	GGTGA	4 cut(s)	34, 43, 326, 964
Hpy166II	GTNNAC	5 cut(s)	8, 51, 769, 817, 892
Hpy188I	TCNGA	5 cut(s)	73, 499, 780, 850, 913
Hpy188III	TCNNGA	4 cut(s)	332, 364, 536, 949
Hpy8I	GTNNAC	5 cut(s)	8, 51, 769, 817, 892
Hpy99I	CGWCG	1 cut(s)	784
HpyAV	CCTTC	4 cut(s)	80, 524, 693, 977
HpyCH4III	ACNGT	5 cut(s)	109, 385, 457, 479, 766
HpyCH4IV	ACGT	1 cut(s)	757
HpyCH4V	TGCA	3 cut(s)	527, 630, 826
HpyF10VI	GCNNNNNNNGC	6 cut(s)	413, 422, 500, 557, 882, 902
HpyF3I	CTNAG	5 cut(s)	78, 253, 357, 741, 935
HpySE526I	ACGT	1 cut(s)	757
Hsp92II	CATG	3 cut(s)	227, 476, 616
HspAI	GCGC	2 cut(s)	393, 603
KflI	GGGWCCC	1 cut(s)	679
Kzo9I	GATC	4 cut(s)	184, 775, 850, 959
LmnI	GCTCC	3 cut(s)	26, 198, 745
Lsp1109I	GCAGC	2 cut(s)	400, 889
LweI	GCATC	4 cut(s)	64, 238, 490, 761
MaeI	CTAG	4 cut(s)	417, 536, 713, 906
MaeII	ACGT	1 cut(s)	757
MaeIII	GTNAC	3 cut(s)	151, 314, 449
MalI	GATC	4 cut(s)	186, 777, 852, 961
MboI	GATC	4 cut(s)	184, 775, 850, 959
MboII	GAAGA	4 cut(s)	31, 155, 593, 989
MflI	RGATCY	2 cut(s)	184, 775
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	6 cut(s)	18, 321, 635, 656, 929, 1000
MlyI	GAGTC	1 cut(s)	349
MmeI	TCCRAC	1 cut(s)	803
MseI	TTAA	3 cut(s)	104, 429, 660
MspI	CCGG	9 cut(s)	24, 54, 438, 465, 676, 717, 728, 879, 1006
MspR9I	CCNGG	3 cut(s)	676, 677, 728
MwoI	GCNNNNNNNGC	6 cut(s)	413, 422, 500, 557, 882, 902
NciI	CCSGG	3 cut(s)	676, 677, 728
NcoI	CCATGG	1 cut(s)	612
NdeII	GATC	4 cut(s)	184, 775, 850, 959
NheI	GCTAGC	2 cut(s)	712, 905
NlaIII	CATG	3 cut(s)	227, 476, 616
NlaIV	GGNNCC	3 cut(s)	680, 681, 777
NmuCI	GTSAC	2 cut(s)	314, 449
PaqCI	CACCTGC	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	869
PflFI	GACNNNGTC	1 cut(s)	12
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	415, 904
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	758
PpuMI	RGGWCCY	1 cut(s)	679
PshAI	GACNNNNGTC	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	679
PspFI	CCCAGC	1 cut(s)	460
PspN4I	GGNNCC	3 cut(s)	680, 681, 777
PspPI	GGNCC	2 cut(s)	679, 939
PspPPI	RGGWCCY	1 cut(s)	679
PsuI	RGATCY	2 cut(s)	184, 775
PsyI	GACNNNGTC	1 cut(s)	12
RsaI	GTAC	3 cut(s)	760, 858, 925
RsaNI	GTAC	3 cut(s)	759, 857, 924
SalI	GTCGAC	1 cut(s)	6
SaqAI	TTAA	3 cut(s)	104, 429, 660
SatI	GCNGC	2 cut(s)	414, 903
Sau3AI	GATC	4 cut(s)	184, 775, 850, 959
Sau96I	GGNCC	2 cut(s)	679, 939
ScaI	AGTACT	1 cut(s)	858
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	3 cut(s)	676, 677, 728
SduI	GDGCHC	1 cut(s)	377
SfaNI	GCATC	4 cut(s)	64, 238, 490, 761
SfcI	CTRYAG	2 cut(s)	288, 864
SgrAI	CRCCGGYG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	679
SmaI	CCCGGG	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	6 cut(s)	18, 321, 635, 656, 929, 1000
SsiI	CCGC	2 cut(s)	211, 874
SspMI	CTAG	4 cut(s)	417, 536, 713, 906
StyD4I	CCNGG	3 cut(s)	674, 675, 726
StyI	CCWWGG	2 cut(s)	135, 612
TaaI	ACNGT	5 cut(s)	109, 385, 457, 479, 766
TaiI	ACGT	1 cut(s)	760
TaqI	TCGA	5 cut(s)	7, 169, 176, 363, 798
TasI	AATT	6 cut(s)	18, 321, 635, 656, 929, 1000
TatI	WGTACW	2 cut(s)	856, 923
TfiI	GAWTC	1 cut(s)	869
Tru1I	TTAA	3 cut(s)	104, 429, 660
Tru9I	TTAA	3 cut(s)	104, 429, 660
TseFI	GTSAC	2 cut(s)	314, 449
TseI	GCWGC	2 cut(s)	413, 902
Tsp45I	GTSAC	2 cut(s)	314, 449
TspDTI	ATGAA	1 cut(s)	996
TspGWI	ACGGA	1 cut(s)	170
TspMI	CCCGGG	1 cut(s)	675
Tth111I	GACNNNGTC	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	679
XapI	RAATTY	2 cut(s)	656, 929
XbaI	TCTAGA	1 cut(s)	535
XcmI	CCANNNNNNNNNTGG	2 cut(s)	769, 949
XmaI	CCCGGG	1 cut(s)	675
XmiI	GTMKAC	1 cut(s)	7
XspI	CTAG	4 cut(s)	417, 536, 713, 906
ZrmI	AGTACT	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.