RLG00000001640

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001761
Physical Location & Seq
Forward (+)
18636519 .. 18637673
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001640

Sequence Viewer

Length: 567 bp
ATGGGTGGTCGTCTAATTGTCGCAACTATCCTCACCTTCACCTTGTTCACCATCATCATCCTTCCCTCCGAGGCAAAGGGAACAACTTACATGTTGGGTTTTACGGGTTGTGATGCCTCGATCCTGTTGGACGCGACACCATCTAGTGAGCCTATAGAGAAAACATCACCAGCCAATAGTGAAACACAAAGAGGTCTTGATGTTATTGATGAGATCAAGGCCCAGAAGATATGGTTCGTCCGGTGCACACTCCATTGGCGAAGCACAATGCACCCAATTGAAGACGGACTATACAAATATAGTGAAGCTCAGCCCCAAGACCCTTCCCTGGACCCAACCTATGCTGATGAGCTTAGCGGAAAGTGCCCAGCACCAGACACATTGCCTGCAGAGCAAGCATTACGTATAATGGTGGACTTTGATCCAACAACACCACTTGACCTCGACAATCAGTACTATGTGAACCTGATGAGAGGGAGAGGCTTGCTTCAATCTGATCAAGTACTGACTACTAATCCCCAAACAGGAGCAATTGTGTTCAAAATGGCTGCTAGCTCTGAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

189

Amino Acids

20.69

Weight (kDa)

4.53

Isoelectric Point (pI)

54.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 93 - 184 8.1e-17 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 134
AciI CCGC 1 cut(s) 357
AclWI GGATC 2 cut(s) 115, 416
AfaI GTAC 2 cut(s) 455, 504
AfiI CCNNNNNNNGG 2 cut(s) 328, 524
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 3 cut(s) 281, 491, 541
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 3 cut(s) 308, 352, 555
AluI AGCT 3 cut(s) 308, 352, 555
Alw21I GWGCWC 1 cut(s) 248
Alw44I GTGCAC 1 cut(s) 244
AlwI GGATC 2 cut(s) 115, 416
AoxI GGCC 1 cut(s) 219
ApaLI GTGCAC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 220, 331
AsuHPI GGTGA 4 cut(s) 25, 31, 40, 159
AsuNHI GCTAGC 1 cut(s) 551
AvaII GGWCC 1 cut(s) 331
BaeGI GKGCMC 2 cut(s) 248, 368
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 535
BccI CCATC 2 cut(s) 59, 148
BciT130I CCWGG 1 cut(s) 329
BclI TGATCA 1 cut(s) 496
BfaI CTAG 2 cut(s) 144, 552
BfmI CTRYAG 2 cut(s) 153, 387
BisI GCNGC 1 cut(s) 549
BlpI GCTNAGC 2 cut(s) 309, 353
BlsI GCNGC 1 cut(s) 550
BmcAI AGTACT 2 cut(s) 455, 504
Bme1390I CCNGG 1 cut(s) 329
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 220, 331
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 329
BmsI GCATC 1 cut(s) 103
BmtI GCTAGC 1 cut(s) 555
BpiI GAAGAC 1 cut(s) 288
Bpu1102I GCTNAGC 2 cut(s) 309, 353
BsaAI YACGTR 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 69, 327
BsaWI WCCGGW 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bsc4I CCNNNNNNNGG 2 cut(s) 328, 524
Bse3DI GCAATG 1 cut(s) 380
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 2 cut(s) 69, 327
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 328, 524
BseMI GCAATG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 323
BseSI GKGCMC 2 cut(s) 248, 368
BseXI GCAGC 1 cut(s) 535
BseYI CCCAGC 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 241
BslI CCNNNNNNNGG 2 cut(s) 328, 524
BsnI GGCC 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 248, 368
Bsp143I GATC 4 cut(s) 120, 213, 421, 496
Bsp1720I GCTNAGC 2 cut(s) 309, 353
BspACI CCGC 1 cut(s) 357
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 333
BspMAI CTGCAG 1 cut(s) 391
BspOI GCTAGC 1 cut(s) 555
BspPI GGATC 2 cut(s) 115, 416
BsrDI GCAATG 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 69, 327
BssMI GATC 4 cut(s) 120, 213, 421, 496
Bst2UI CCWGG 1 cut(s) 329
BstBAI YACGTR 1 cut(s) 404
BstC8I GCNNGC 4 cut(s) 387, 396, 485, 553
BstDEI CTNAG 2 cut(s) 309, 353
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 4 cut(s) 123, 216, 424, 499
BstMBI GATC 4 cut(s) 120, 213, 421, 496
BstMWI GCNNNNNNNGC 3 cut(s) 363, 391, 395
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 327
BstSFI CTRYAG 2 cut(s) 153, 387
BstSLI GKGCMC 2 cut(s) 248, 368
BstSNI TACGTA 1 cut(s) 404
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 535
BstV2I GAAGAC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 221
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 4 cut(s) 387, 396, 485, 553
Cfr13I GGNCC 2 cut(s) 220, 331
CseI GACGC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 454, 503
CviAII CATG 1 cut(s) 91
CviJI RGCY 9 cut(s) 151, 173, 221, 308, 313, 352, 483, 548, 555
CviKI_1 RGCY 9 cut(s) 151, 173, 221, 308, 313, 352, 483, 548, 555
CviQI GTAC 2 cut(s) 454, 503
DdeI CTNAG 2 cut(s) 309, 353
DpnI GATC 4 cut(s) 122, 215, 423, 498
DpnII GATC 4 cut(s) 120, 213, 421, 496
Eco105I TACGTA 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 327
FaeI CATG 1 cut(s) 94
FaiI YATR 8 cut(s) 92, 155, 232, 292, 300, 342, 407, 459
FatI CATG 1 cut(s) 90
FbaI TGATCA 1 cut(s) 496
Fnu4HI GCNGC 1 cut(s) 549
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 549
FspBI CTAG 2 cut(s) 144, 552
GluI GCNGC 1 cut(s) 549
GsaI CCCAGC 1 cut(s) 371
HaeIII GGCC 1 cut(s) 221
HapII CCGG 1 cut(s) 241
HgaI GACGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 94
HpaII CCGG 1 cut(s) 241
HphI GGTGA 4 cut(s) 25, 31, 40, 159
Hpy166II GTNNAC 4 cut(s) 48, 246, 415, 463
Hpy188I TCNGA 3 cut(s) 70, 496, 559
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 4 cut(s) 48, 246, 415, 463
HpyAV CCTTC 3 cut(s) 46, 71, 333
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 3 cut(s) 246, 271, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 363, 391, 395
HpyF3I CTNAG 2 cut(s) 309, 353
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 4 cut(s) 120, 213, 421, 496
LmnI GCTCC 1 cut(s) 527
Lsp1109I GCAGC 1 cut(s) 535
LweI GCATC 1 cut(s) 103
MaeI CTAG 2 cut(s) 144, 552
MaeII ACGT 1 cut(s) 403
MalI GATC 4 cut(s) 122, 215, 423, 498
MboI GATC 4 cut(s) 120, 213, 421, 496
MboII GAAGA 2 cut(s) 238, 293
MfeI CAATTG 2 cut(s) 276, 531
MhlI GDGCHC 2 cut(s) 248, 368
MluCI AATT 3 cut(s) 15, 276, 531
MmeI TCCRAC 2 cut(s) 108, 449
MnlI CCTC 8 cut(s) 41, 64, 76, 127, 185, 452, 467, 473
MseI TTAA 1 cut(s) 565
MspI CCGG 1 cut(s) 241
MspR9I CCNGG 1 cut(s) 329
MunI CAATTG 2 cut(s) 276, 531
MvaI CCWGG 1 cut(s) 329
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 3 cut(s) 363, 391, 395
NdeII GATC 4 cut(s) 120, 213, 421, 496
NheI GCTAGC 1 cut(s) 551
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 333
NspI RCATGY 1 cut(s) 94
PciI ACATGT 1 cut(s) 90
PkrI GCNGC 1 cut(s) 550
Ppu21I YACGTR 1 cut(s) 404
PscI ACATGT 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 327
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 2 cut(s) 220, 331
PstI CTGCAG 1 cut(s) 391
RsaI GTAC 2 cut(s) 455, 504
RsaNI GTAC 2 cut(s) 454, 503
SaqAI TTAA 1 cut(s) 565
SatI GCNGC 1 cut(s) 549
Sau3AI GATC 4 cut(s) 120, 213, 421, 496
Sau96I GGNCC 2 cut(s) 220, 331
ScaI AGTACT 2 cut(s) 455, 504
ScrFI CCNGG 1 cut(s) 329
SduI GDGCHC 2 cut(s) 248, 368
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 2 cut(s) 153, 387
SinI GGWCC 1 cut(s) 331
SnaBI TACGTA 1 cut(s) 404
Sse9I AATT 3 cut(s) 15, 276, 531
SsiI CCGC 1 cut(s) 357
SspMI CTAG 2 cut(s) 144, 552
StyD4I CCNGG 1 cut(s) 327
TaiI ACGT 1 cut(s) 406
TaqI TCGA 2 cut(s) 119, 444
TasI AATT 3 cut(s) 15, 276, 531
TatI WGTACW 2 cut(s) 453, 502
Tru1I TTAA 1 cut(s) 565
Tru9I TTAA 1 cut(s) 565
TseI GCWGC 1 cut(s) 548
TspGWI ACGGA 1 cut(s) 300
VneI GTGCAC 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 331
XceI RCATGY 1 cut(s) 94
XspI CTAG 2 cut(s) 144, 552
ZrmI AGTACT 2 cut(s) 455, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.