Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001772.1

Orthogroup ID

OG0001761

Physical Location & Seq

Genomic Coordinates Forward (+)

145824 .. 146992

Gene Structure 1169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001772.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgggtggtcgtctaattgccgcaactatcctcaccttcaccttgttcaccatcatcatccttccctccgaggctaagggagaaggcaaagggaacggcttacatgttgggttttacgcttcgagttgccccaaggttgaggacattgttgctgagggttgtgatgcctcgatcttgttggaggcgacaccatctgctgagcctatagagaaaacatcaccagccaattgtgaaacactcagaggtcttgaggttgttgatgagatcaaagcccaggtagagcaggagtgcccccaaactgtttcctgcgctgacaaattagcatttgctgctcgagaagccgtttacctagccggcctaccccgtcacaatgtcccaaccggtcgccgtgacagtaggactttccgtgcttctaatgtcaatttcaacgagaaatcccacactagaagatatggttgtctcgtccggtgcacactccattggcgaagcacaatgcacccaattgaagacagactatacaaatatagcaaagctcagccccgagacccttccctggacccaacctatgctgatgagctaggcagaaagtgctcagcactagacacattgcctgcaaagcaagcattacgtataatggtggactttgatccaacaacaccacttgaccttgacaatcagtactatgtgaacctgatgagagggagaggcttgcttcaatcggatcaagtactgactactgatccccaaacaggagcaattatgttcagaatggttgactactctgaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

263

Amino Acids

29.15

Weight (kDa)

5.8

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001761)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25120 FvH4_4g25140
malus_domestica	MD13G1097600.v1.1 MD13G1097700.v1.1 MD16G1098700.v1.1 MD16G1098800.v1.1
prunus_persica	Prupe.1G247700_v2.0.a1 Prupe.1G247800_v2.0.a1
pyrus_communis	pycom13g08540
rosa_chinensis	RchiOBHm_Chr4g0432321 RchiOBHm_Chr4g0432331 RchiOBHm_Chr4g0433321 RchiOBHm_Chr4g0433341
rosa_laevigata	RLG00000001640 RLG00000006762 RLG00000006763 RLG00000006853
rosa_multiflora	Rmu_co8257897.1_g000001 Rmu_co8369943.1_g000001 Rmu_sc0000354.1_g000009 Rmu_sc0000354.1_g000012 Rmu_sc0001772.1_g000035
rosa_roxburghii	Rroxscaffold_3G00232110 Rroxscaffold_5G00374880 Rroxscaffold_5G00374910
rosa_rugosa	Rorug04G0257100 Rorug04G0268000
rosa_samantha	Rh4AG313300 Rh4AG322600 Rh4AG322700 Rh4BG320900 Rh4BG330100 Rh4BG330200 Rh4CG336100 Rh4CG345500 Rh4CG345600 Rh4CG345800 Rh4DG316400 Rh4DG316500 Rh4DG326800 Rh4DG326900 Rh7AG394400
rosa_wichuraiana	Rw0G000490 Rw0G023850 Rw4G027240 Rw4G027920 Rw4G027930 Rw7G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	3 cut(s)	641, 729, 734
AfaI	GTAC	2 cut(s)	680, 729
AfiI	CCNNNNNNNGG	2 cut(s)	553, 749
AflIII	ACRYGT	1 cut(s)	103
AgeI	ACCGGT	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	427, 506, 716
AjnI	CCWGG	2 cut(s)	273, 552
AluBI	AGCT	2 cut(s)	533, 577
AluI	AGCT	2 cut(s)	533, 577
Alw21I	GWGCWC	2 cut(s)	473, 593
Alw26I	GTCTC	2 cut(s)	464, 537
Alw44I	GTGCAC	1 cut(s)	469
AlwI	GGATC	3 cut(s)	641, 729, 734
Ama87I	CYCGRG	2 cut(s)	333, 540
AoxI	GGCC	1 cut(s)	355
ApaLI	GTGCAC	1 cut(s)	469
ApeKI	GCWGC	1 cut(s)	329
AsiGI	ACCGGT	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	556
AsuHPI	GGTGA	4 cut(s)	25, 31, 40, 210
AvaI	CYCGRG	2 cut(s)	333, 540
AvaII	GGWCC	1 cut(s)	556
BaeGI	GKGCMC	2 cut(s)	293, 473
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	2 cut(s)	473, 593
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	2 cut(s)	59, 199
BceAI	ACGGC	3 cut(s)	112, 326, 372
BciT130I	CCWGG	2 cut(s)	275, 554
BcoDI	GTCTC	2 cut(s)	464, 537
BfaI	CTAG	4 cut(s)	350, 444, 578, 599
BfmI	CTRYAG	1 cut(s)	204
BisI	GCNGC	2 cut(s)	21, 330
BlpI	GCTNAGC	3 cut(s)	198, 534, 592
BlsI	GCNGC	2 cut(s)	22, 331
BmcAI	AGTACT	2 cut(s)	680, 729
Bme1390I	CCNGG	2 cut(s)	275, 554
Bme18I	GGWCC	1 cut(s)	556
BmeT110I	CYCGRG	2 cut(s)	333, 540
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	2 cut(s)	275, 554
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	513
Bpu10I	CCTNAGC	2 cut(s)	75, 153
Bpu1102I	GCTNAGC	3 cut(s)	198, 534, 592
BpuEI	CTTGAG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	629
BsaI	GGTCTC	1 cut(s)	537
BsaJI	CCNNGG	4 cut(s)	69, 132, 273, 552
BsaWI	WCCGGW	2 cut(s)	380, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 749
Bse118I	RCCGGY	2 cut(s)	353, 380
Bse3DI	GCAATG	1 cut(s)	605
BseBI	CCWGG	2 cut(s)	275, 554
BseDI	CCNNGG	4 cut(s)	69, 132, 273, 552
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	553, 749
BseMI	GCAATG	1 cut(s)	605
BseMII	CTCAG	5 cut(s)	144, 189, 253, 548, 606
BseSI	GKGCMC	2 cut(s)	293, 473
BseXI	GCAGC	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	1 cut(s)	357
BshTI	ACCGGT	1 cut(s)	380
BsiEI	CGRYCG	1 cut(s)	385
BsiHKAI	GWGCWC	2 cut(s)	473, 593
BsiHKCI	CYCGRG	2 cut(s)	333, 540
BsiSI	CCGG	3 cut(s)	354, 381, 466
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	2 cut(s)	553, 749
BsmAI	GTCTC	2 cut(s)	464, 537
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	537
BsoBI	CYCGRG	2 cut(s)	333, 540
Bsp1286I	GDGCHC	3 cut(s)	293, 473, 593
Bsp143I	GATC	5 cut(s)	171, 264, 646, 721, 739
Bsp1720I	GCTNAGC	3 cut(s)	198, 534, 592
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	5 cut(s)	145, 190, 252, 547, 605
BspLI	GGNNCC	1 cut(s)	558
BspPI	GGATC	3 cut(s)	641, 729, 734
BspTNI	GGTCTC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	605
BsrFI	RCCGGY	2 cut(s)	353, 380
BssAI	RCCGGY	2 cut(s)	353, 380
BssECI	CCNNGG	4 cut(s)	69, 132, 273, 552
BssMI	GATC	5 cut(s)	171, 264, 646, 721, 739
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	275, 554
Bst4CI	ACNGT	2 cut(s)	301, 395
BstAPI	GCANNNNNTGC	2 cut(s)	329, 588
BstBAI	YACGTR	1 cut(s)	629
BstC8I	GCNNGC	4 cut(s)	355, 612, 621, 710
BstDEI	CTNAG	6 cut(s)	75, 153, 198, 239, 534, 592
BstF5I	GGATG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	5 cut(s)	174, 267, 649, 724, 742
BstMAI	GTCTC	2 cut(s)	464, 537
BstMBI	GATC	5 cut(s)	171, 264, 646, 721, 739
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	5 cut(s)	329, 338, 588, 616, 620
BstNI	CCWGG	2 cut(s)	275, 554
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	273, 552
BstSFI	CTRYAG	1 cut(s)	204
BstSLI	GKGCMC	2 cut(s)	293, 473
BstSNI	TACGTA	1 cut(s)	629
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	4 cut(s)	355, 612, 621, 710
CfoI	GCGC	1 cut(s)	311
Cfr10I	RCCGGY	2 cut(s)	353, 380
Cfr13I	GGNCC	1 cut(s)	556
Csp6I	GTAC	2 cut(s)	679, 728
CspAI	ACCGGT	1 cut(s)	380
CviAII	CATG	1 cut(s)	104
CviQI	GTAC	2 cut(s)	679, 728
DdeI	CTNAG	6 cut(s)	75, 153, 198, 239, 534, 592
DpnI	GATC	5 cut(s)	173, 266, 648, 723, 741
DpnII	GATC	5 cut(s)	171, 264, 646, 721, 739
Eco105I	TACGTA	1 cut(s)	629
Eco130I	CCWWGG	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	556
Eco88I	CYCGRG	2 cut(s)	333, 540
EcoRII	CCWGG	2 cut(s)	273, 552
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	1 cut(s)	107
FaiI	YATR	9 cut(s)	105, 206, 453, 517, 525, 567, 632, 684, 761
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	21, 330
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	21, 330
FspBI	CTAG	4 cut(s)	350, 444, 578, 599
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	2 cut(s)	21, 330
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	3 cut(s)	354, 381, 466
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HpaII	CCGG	3 cut(s)	354, 381, 466
HphI	GGTGA	4 cut(s)	25, 31, 40, 210
Hpy166II	GTNNAC	6 cut(s)	48, 346, 471, 640, 688, 775
Hpy188I	TCNGA	5 cut(s)	70, 242, 721, 767, 784
Hpy188III	TCNNGA	2 cut(s)	248, 335
Hpy8I	GTNNAC	6 cut(s)	48, 346, 471, 640, 688, 775
HpyAV	CCTTC	4 cut(s)	46, 71, 77, 558
HpyCH4III	ACNGT	2 cut(s)	301, 395
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	3 cut(s)	471, 496, 614
HpyF10VI	GCNNNNNNNGC	5 cut(s)	329, 338, 588, 616, 620
HpyF3I	CTNAG	6 cut(s)	75, 153, 198, 239, 534, 592
HpySE526I	ACGT	1 cut(s)	628
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	309
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
Kzo9I	GATC	5 cut(s)	171, 264, 646, 721, 739
LmnI	GCTCC	1 cut(s)	752
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	4 cut(s)	350, 444, 578, 599
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	2 cut(s)	365, 389
MalI	GATC	5 cut(s)	173, 266, 648, 723, 741
MboI	GATC	5 cut(s)	171, 264, 646, 721, 739
MboII	GAAGA	2 cut(s)	459, 518
MfeI	CAATTG	2 cut(s)	226, 501
MhlI	GDGCHC	3 cut(s)	293, 473, 593
MluCI	AATT	6 cut(s)	15, 226, 317, 421, 501, 756
MmeI	TCCRAC	2 cut(s)	159, 674
MroNI	GCCGGC	1 cut(s)	353
MspI	CCGG	3 cut(s)	354, 381, 466
MspR9I	CCNGG	2 cut(s)	275, 554
MunI	CAATTG	2 cut(s)	226, 501
MvaI	CCWGG	2 cut(s)	275, 554
MwoI	GCNNNNNNNGC	5 cut(s)	329, 338, 588, 616, 620
NaeI	GCCGGC	1 cut(s)	355
NdeII	GATC	5 cut(s)	171, 264, 646, 721, 739
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	2 cut(s)	365, 389
NspI	RCATGY	1 cut(s)	107
PaeR7I	CTCGAG	1 cut(s)	333
PciI	ACATGT	1 cut(s)	103
PdiI	GCCGGC	1 cut(s)	355
PinAI	ACCGGT	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	22, 331
Ppu21I	YACGTR	1 cut(s)	629
PscI	ACATGT	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	273, 552
PspGI	CCWGG	2 cut(s)	273, 552
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	1 cut(s)	556
RsaI	GTAC	2 cut(s)	680, 729
RsaNI	GTAC	2 cut(s)	679, 728
SatI	GCNGC	2 cut(s)	21, 330
Sau3AI	GATC	5 cut(s)	171, 264, 646, 721, 739
Sau96I	GGNCC	1 cut(s)	556
ScaI	AGTACT	2 cut(s)	680, 729
ScrFI	CCNGG	2 cut(s)	275, 554
SduI	GDGCHC	3 cut(s)	293, 473, 593
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	1 cut(s)	204
Sfr274I	CTCGAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	556
SlaI	CTCGAG	1 cut(s)	333
SmlI	CTYRAG	2 cut(s)	248, 333
SmoI	CTYRAG	2 cut(s)	248, 333
SnaBI	TACGTA	1 cut(s)	629
Sse9I	AATT	6 cut(s)	15, 226, 317, 421, 501, 756
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	4 cut(s)	350, 444, 578, 599
StyD4I	CCNGG	2 cut(s)	273, 552
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	301, 395
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	3 cut(s)	122, 170, 334
TasI	AATT	6 cut(s)	15, 226, 317, 421, 501, 756
TatI	WGTACW	2 cut(s)	678, 727
TauI	GCSGC	1 cut(s)	23
TseFI	GTSAC	2 cut(s)	365, 389
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	2 cut(s)	365, 389
TspGWI	ACGGA	1 cut(s)	395
VneI	GTGCAC	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	556
XceI	RCATGY	1 cut(s)	107
XhoI	CTCGAG	1 cut(s)	333
XspI	CTAG	4 cut(s)	350, 444, 578, 599
ZrmI	AGTACT	2 cut(s)	680, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.