Rh4CG345800

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001761
Physical Location & Seq
Forward (+)
60479543 .. 60480398
856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG345800.1

Sequence Viewer

Length: 288 bp
ATGGTTCGTCCTCTAATTGCTGCAACTATCCTCACCTTCACCTTGTTCACCATTGTCATCCTTCCGTCCGAGGCCAAGGGACAAGGCAAAGGGTACGACTTACATGTCGGGTTTTACGCTTCACGTTGCCCCAAGGTTGAGGACATTGTTGCTGAGGTTGTGGCCCGTGTTCATGAGCAAGATCCCAAGCTCCCTCCTGACCTTCTCGGCCTCTTTTTCCATGATTGCTTTGTCAAGGGTTGTATACCTCGATCCTGTTGGACGCGACATCATCTGGTGAGCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

95

Amino Acids

10.63

Weight (kDa)

7.74

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AccI GTMKAC 1 cut(s) 244
AccII CGCG 1 cut(s) 265
AclWI GGATC 2 cut(s) 176, 246
AfaI GTAC 1 cut(s) 95
AflIII ACRYGT 1 cut(s) 103
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
AlwI GGATC 2 cut(s) 176, 246
AoxI GGCC 3 cut(s) 72, 162, 208
ApeKI GCWGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 3 cut(s) 25, 31, 40
BbvCI CCTCAGC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 7
BfmI CTRYAG 1 cut(s) 284
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 69, 75, 132
BseDI CCNNGG 3 cut(s) 69, 75, 132
BseGI GGATG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 265
BshFI GGCC 3 cut(s) 74, 164, 210
BslFI GGGAC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 93
BsnI GGCC 3 cut(s) 74, 164, 210
Bsp143I GATC 2 cut(s) 181, 251
BspANI GGCC 3 cut(s) 74, 164, 210
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 265
BspHI TCATGA 1 cut(s) 172
BspPI GGATC 2 cut(s) 176, 246
BssECI CCNNGG 3 cut(s) 69, 75, 132
BssMI GATC 2 cut(s) 181, 251
BssNAI GTATAC 1 cut(s) 245
BssT1I CCWWGG 2 cut(s) 75, 132
Bst1107I GTATAC 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 265
BstKTI GATC 2 cut(s) 184, 254
BstMBI GATC 2 cut(s) 181, 251
BstNSI RCATGY 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 284
BstUI CGCG 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BstZ17I GTATAC 1 cut(s) 245
BsuRI GGCC 3 cut(s) 74, 164, 210
BtsCI GGATG 1 cut(s) 57
CciI TCATGA 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 94
CviAII CATG 3 cut(s) 104, 173, 221
CviJI RGCY 5 cut(s) 74, 164, 190, 210, 282
CviKI_1 RGCY 5 cut(s) 74, 164, 190, 210, 282
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 153
DpnI GATC 2 cut(s) 183, 253
DpnII GATC 2 cut(s) 181, 251
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eco130I CCWWGG 2 cut(s) 75, 132
EcoT14I CCWWGG 2 cut(s) 75, 132
ErhI CCWWGG 2 cut(s) 75, 132
FaeI CATG 3 cut(s) 107, 176, 224
FaiI YATR 5 cut(s) 105, 174, 222, 245, 286
FaqI GGGAC 1 cut(s) 93
FatI CATG 3 cut(s) 103, 172, 220
FblI GTMKAC 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 3 cut(s) 74, 164, 210
HgaI GACGC 1 cut(s) 271
Hin1II CATG 3 cut(s) 107, 176, 224
HphI GGTGA 3 cut(s) 25, 31, 40
Hpy166II GTNNAC 2 cut(s) 48, 245
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 173, 197
Hpy8I GTNNAC 2 cut(s) 48, 245
HpyAV CCTTC 3 cut(s) 46, 71, 212
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 3 cut(s) 107, 176, 224
Kzo9I GATC 2 cut(s) 181, 251
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 3 cut(s) 210, 260, 268
Lsp1109I GCAGC 1 cut(s) 7
MaeII ACGT 1 cut(s) 124
MalI GATC 2 cut(s) 183, 253
MboI GATC 2 cut(s) 181, 251
MflI RGATCY 1 cut(s) 181
MluCI AATT 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 8 cut(s) 21, 41, 64, 133, 148, 204, 221, 258
MvnI CGCG 1 cut(s) 265
NdeII GATC 2 cut(s) 181, 251
NlaIII CATG 3 cut(s) 107, 176, 224
NmeAIII GCCGAG 1 cut(s) 186
NspI RCATGY 1 cut(s) 107
PagI TCATGA 1 cut(s) 172
PciI ACATGT 1 cut(s) 103
PkrI GCNGC 1 cut(s) 22
PscI ACATGT 1 cut(s) 103
PspPI GGNCC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 181, 251
Sau96I GGNCC 1 cut(s) 163
SetI ASST 8 cut(s) 38, 44, 127, 138, 159, 192, 204, 250
SfcI CTRYAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 15
StyI CCWWGG 2 cut(s) 75, 132
TaiI ACGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 250
TasI AATT 1 cut(s) 15
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 161
TspGWI ACGGA 1 cut(s) 54
XceI RCATGY 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.