RchiOBHm_Chr4g0432321

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001761
Physical Location & Seq
Reverse (-)
56480113 .. 56481894
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40094

Sequence Viewer

Length: 399 bp
ATGTTCGCCAAAAGAGGCTTGACAACAGAAGATATGGTTGTCTTGTCCGGTGTACACTCCATTGGCGAAACACAATGCACCCAAATTGAAGACAGATTATACAAATATAGCAAAGCTCAGCCCCGAGACCCTTCCCTGGACCCAACCTATGCTGATGAGCTAGCCGGAAAGTGCCTAGCACCAGACACATTACCTGCGGAGCAAGCATTATTTACAATGGTGGACTTTGATCCAACAACACCACTTGACCTCAACAATCAGTACTATGTGAACCTGATGAGAGGGAGAGGCTTGCTTCAATCGGATCAAGTACTGATTACTGATCCCCAAACCGGAGCAATTGTGTACAGAATGGCCGCTAGCTCTGAAACTTGGAGTAAAAATTTTTTCAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

132

Amino Acids

14.75

Weight (kDa)

4.73

Isoelectric Point (pI)

28.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 1 - 120 2.4e-32 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
AciI CCGC 2 cut(s) 197, 357
AclWI GGATC 3 cut(s) 224, 312, 317
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 1 cut(s) 382
AfaI GTAC 4 cut(s) 54, 263, 312, 347
AfiI CCNNNNNNNGG 2 cut(s) 136, 332
AgsI TTSAA 3 cut(s) 89, 299, 391
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 3 cut(s) 116, 160, 363
AluI AGCT 3 cut(s) 116, 160, 363
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 3 cut(s) 224, 312, 317
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 1 cut(s) 354
ApoI RAATTY 1 cut(s) 382
AspS9I GGNCC 1 cut(s) 139
AsuNHI GCTAGC 2 cut(s) 160, 359
AvaI CYCGRG 1 cut(s) 123
AvaII GGWCC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 3 cut(s) 161, 176, 360
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 1 cut(s) 357
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 358
BmcAI AGTACT 2 cut(s) 263, 312
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 137
BmtI GCTAGC 2 cut(s) 164, 363
BpiI GAAGAC 1 cut(s) 96
Bpu1102I GCTNAGC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 2 cut(s) 47, 332
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 332
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 136, 332
BseMII CTCAG 1 cut(s) 131
BshFI GGCC 1 cut(s) 356
BsiHKCI CYCGRG 1 cut(s) 123
BsiSI CCGG 3 cut(s) 48, 165, 333
BslI CCNNNNNNNGG 2 cut(s) 136, 332
BsmAI GTCTC 1 cut(s) 120
BsnI GGCC 1 cut(s) 356
Bso31I GGTCTC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 123
Bsp1407I TGTACA 2 cut(s) 52, 345
Bsp143I GATC 3 cut(s) 229, 304, 322
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 2 cut(s) 197, 357
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 202
BspOI GCTAGC 2 cut(s) 164, 363
BspPI GGATC 3 cut(s) 224, 312, 317
BspTNI GGTCTC 1 cut(s) 120
BsrGI TGTACA 2 cut(s) 52, 345
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 3 cut(s) 229, 304, 322
Bst2UI CCWGG 1 cut(s) 137
BstAUI TGTACA 2 cut(s) 52, 345
BstC8I GCNNGC 4 cut(s) 162, 204, 293, 361
BstDEI CTNAG 1 cut(s) 117
BstKTI GATC 3 cut(s) 232, 307, 325
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 3 cut(s) 229, 304, 322
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 356
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 4 cut(s) 162, 204, 293, 361
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 4 cut(s) 53, 262, 311, 346
CviAII CATG 1 cut(s) 396
CviJI RGCY 8 cut(s) 18, 116, 121, 160, 164, 291, 356, 363
CviKI_1 RGCY 8 cut(s) 18, 116, 121, 160, 164, 291, 356, 363
CviQI GTAC 4 cut(s) 53, 262, 311, 346
DdeI CTNAG 1 cut(s) 117
DpnI GATC 3 cut(s) 231, 306, 324
DpnII GATC 3 cut(s) 229, 304, 322
EaeI YGGCCR 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 399
FaiI YATR 6 cut(s) 35, 100, 108, 150, 267, 397
FatI CATG 1 cut(s) 395
Fnu4HI GCNGC 1 cut(s) 357
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 3 cut(s) 161, 176, 360
GluI GCNGC 1 cut(s) 357
HaeIII GGCC 1 cut(s) 356
HapII CCGG 3 cut(s) 48, 165, 333
Hin1II CATG 1 cut(s) 399
HpaII CCGG 3 cut(s) 48, 165, 333
Hpy166II GTNNAC 5 cut(s) 53, 55, 223, 271, 346
Hpy188I TCNGA 2 cut(s) 304, 367
Hpy8I GTNNAC 5 cut(s) 53, 55, 223, 271, 346
HpyAV CCTTC 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 1 cut(s) 399
Kzo9I GATC 3 cut(s) 229, 304, 322
LmnI GCTCC 2 cut(s) 199, 335
LpnPI CCDG 8 cut(s) 61, 122, 149, 178, 195, 207, 287, 346
MaeI CTAG 3 cut(s) 161, 176, 360
MalI GATC 3 cut(s) 231, 306, 324
MboI GATC 3 cut(s) 229, 304, 322
MboII GAAGA 2 cut(s) 41, 101
MfeI CAATTG 1 cut(s) 339
MluCI AATT 3 cut(s) 84, 339, 382
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 4 cut(s) 8, 260, 275, 281
MspI CCGG 3 cut(s) 48, 165, 333
MspR9I CCNGG 1 cut(s) 137
MunI CAATTG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 3 cut(s) 229, 304, 322
NheI GCTAGC 2 cut(s) 160, 359
NlaIII CATG 1 cut(s) 399
NlaIV GGNNCC 1 cut(s) 141
PkrI GCNGC 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 139
RsaI GTAC 4 cut(s) 54, 263, 312, 347
RsaNI GTAC 4 cut(s) 53, 262, 311, 346
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 3 cut(s) 229, 304, 322
Sau96I GGNCC 1 cut(s) 139
ScaI AGTACT 2 cut(s) 263, 312
ScrFI CCNGG 1 cut(s) 137
SetI ASST 7 cut(s) 118, 149, 162, 196, 252, 276, 365
SinI GGWCC 1 cut(s) 139
Sse9I AATT 3 cut(s) 84, 339, 382
SsiI CCGC 2 cut(s) 197, 357
SspMI CTAG 3 cut(s) 161, 176, 360
StyD4I CCNGG 1 cut(s) 135
TasI AATT 3 cut(s) 84, 339, 382
TatI WGTACW 4 cut(s) 52, 261, 310, 345
TauI GCSGC 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 382
XspI CTAG 3 cut(s) 161, 176, 360
ZrmI AGTACT 2 cut(s) 263, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.