pycom13g08540

Peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0001761
Physical Location & Seq
Forward (+)
5685594 .. 5686802
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g08540.2

Sequence Viewer

Length: 1020 bp
ATGGAGATGGGCCCTTGTTTAATTGCCACGGCAGTTTTTGCCGTCACCTTGTGCTCCATGATCATCATTCCTTGTTCGGCGGACGAGGTGAACAACCCGGGGAATGGGTTGCATGTCGGATTTTACGATCGGAAATGTCCCAATTTGGAGCAAATTGTGACTGACGTTGTGGCCAAGGCTGTAGAGACAGACCAAAAGCTTCCTGCTGGCCTCATTCGCCTCTTCTTCCACGACTGCTTTGTGAAGGGATGCGATGCATCAATTCTGCTGGATGCCACGCCCTCTGACGAACCCGTAGAGATGCAATCACCGGCCAGCGGTGGAATCCGAGGTATCGAAGTCATTGAAGAGATTAAGGCTAGGCTAGAGCAGGAATGCCCGGAAACCGTCTCCTGCGCCGACATACTAGCCTTTGCCACTCGGGAAGCTGTGGCTCTCTCCGGTTTACCCCGTCACCAAGTCCCCGCCGGGCGCCGCGACAGCCGCACATCTCGTGCCTCCGATGTCATTCTTCCTTCTCCCGCAACACCAATGGACGAGATCATAGACTTCTTCTCCAGAAGAAACTTGACCCCCGAGGAAATGGTCGTCTTGTTTGGCGCGCACTCCATCGGGGCCGTCCACTGCAACTTCTTCGATTACAGGCTGTACAATTTCGCACCAGGTATGCCACAAGACCCTTCACTAAACCCGGTATTTGCGGCTGAGCTGGCTCAACAGTGCCCTGCACCCAACACATTGCCAGCTGAGGAGGCTGAAAACAGGGTTGTTGACTTTGATGCCACACCGCTCGTCCTGGACAATCACTACTACACGAACCTGATGCAAGGGAAAGCATTGATACAATCGGATCAGGCTCTGGTGACGGATCCTCGCACCGGCTTTGAGGTGGCGAAACTGGCTATTAGGTCTGATTCTTGGGCTCGGCAATTTGTTAGGGCCATAATTAAGATGGGGAGAATCAATGTTCTCACTGGAGATGCAGGAGAGATAAGAAAAAATTGTCGGAACTTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

340

Amino Acids

37.11

Weight (kDa)

4.9

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 471
AccBSI CCGCTC 1 cut(s) 790
AccII CGCG 2 cut(s) 477, 602
AciI CCGC 8 cut(s) 80, 318, 465, 475, 484, 522, 701, 788
AclWI GGATC 3 cut(s) 858, 863, 876
AcoI YGGCCR 2 cut(s) 171, 312
AcyI GRCGYC 1 cut(s) 472
AdeI CACNNNGTG 1 cut(s) 51
AfaI GTAC 1 cut(s) 650
AfiI CCNNNNNNNGG 3 cut(s) 104, 317, 878
AgsI TTSAA 2 cut(s) 347, 1015
AjnI CCWGG 2 cut(s) 661, 795
AluBI AGCT 4 cut(s) 199, 428, 709, 746
AluI AGCT 4 cut(s) 199, 428, 709, 746
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 2 cut(s) 179, 394
AlwI GGATC 3 cut(s) 858, 863, 876
AlwNI CAGNNNCTG 1 cut(s) 859
Ama87I CYCGRG 3 cut(s) 97, 420, 575
AoxI GGCC 6 cut(s) 10, 171, 208, 312, 615, 939
ApaI GGGCCC 1 cut(s) 14
AspLEI GCGC 4 cut(s) 398, 474, 602, 604
AspS9I GGNCC 4 cut(s) 10, 11, 615, 939
AsuC2I CCSGG 5 cut(s) 98, 99, 380, 469, 692
AsuHPI GGTGA 5 cut(s) 37, 100, 300, 446, 874
AvaI CYCGRG 3 cut(s) 97, 420, 575
BaeGI GKGCMC 2 cut(s) 14, 725
BalI TGGCCA 1 cut(s) 173
BamHI GGATCC 1 cut(s) 868
BanI GGYRCC 1 cut(s) 471
BanII GRGCYC 2 cut(s) 14, 925
BauI CACGAG 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 56
BbvCI CCTCAGC 1 cut(s) 747
BccI CCATC 2 cut(s) 617, 946
BceAI ACGGC 3 cut(s) 26, 45, 602
BcgI CGANNNNNNTGC 4 cut(s) 616, 650, 805, 839
BciT130I CCWGG 2 cut(s) 663, 797
BclI TGATCA 1 cut(s) 60
BcnI CCSGG 5 cut(s) 98, 99, 380, 469, 692
BcoDI GTCTC 2 cut(s) 179, 394
BfaI CTAG 3 cut(s) 360, 365, 407
BfmI CTRYAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 475
BisI GCNGC 3 cut(s) 475, 484, 702
BlpI GCTNAGC 1 cut(s) 705
BlsI GCNGC 3 cut(s) 476, 485, 703
Bme1390I CCNGG 7 cut(s) 98, 99, 380, 469, 663, 692, 797
BmeT110I CYCGRG 3 cut(s) 97, 420, 575
BmgT120I GGNCC 4 cut(s) 10, 11, 615, 939
BmiI GGNNCC 4 cut(s) 12, 473, 616, 870
BmrFI CCNGG 7 cut(s) 98, 99, 380, 469, 663, 692, 797
BmsI GCATC 8 cut(s) 239, 244, 262, 266, 291, 769, 813, 970
BpmI CTGGAG 2 cut(s) 541, 996
Bpu10I CCTNAGC 1 cut(s) 747
Bpu1102I GCTNAGC 1 cut(s) 705
BpuMI CCSGG 5 cut(s) 98, 99, 380, 469, 692
BsaHI GRCGYC 1 cut(s) 472
BsaJI CCNNGG 6 cut(s) 27, 97, 98, 174, 328, 576
BsaWI WCCGGW 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 539, 569
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 317, 878
Bse118I RCCGGY 2 cut(s) 310, 878
Bse1I ACTGG 2 cut(s) 903, 979
Bse3DI GCAATG 1 cut(s) 737
BseBI CCWGG 2 cut(s) 663, 797
BseDI CCNNGG 6 cut(s) 27, 97, 98, 174, 328, 576
BseGI GGATG 2 cut(s) 254, 277
BseLI CCNNNNNNNGG 3 cut(s) 104, 317, 878
BseMI GCAATG 1 cut(s) 737
BseMII CTCAG 2 cut(s) 696, 738
BseNI ACTGG 2 cut(s) 903, 979
BsePI GCGCGC 1 cut(s) 600
BseRI GAGGAG 1 cut(s) 764
BseSI GKGCMC 2 cut(s) 14, 725
BsgI GTGCAG 1 cut(s) 711
Bsh1236I CGCG 2 cut(s) 477, 602
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 6 cut(s) 12, 173, 210, 314, 617, 941
BshNI GGYRCC 1 cut(s) 471
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 3 cut(s) 97, 420, 575
BsiSI CCGG 7 cut(s) 98, 311, 380, 441, 468, 692, 879
BslFI GGGAC 2 cut(s) 123, 446
BslI CCNNNNNNNGG 3 cut(s) 104, 317, 878
BsmAI GTCTC 2 cut(s) 179, 394
BsmBI CGTCTC 1 cut(s) 394
BsmFI GGGAC 2 cut(s) 123, 446
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 6 cut(s) 12, 173, 210, 314, 617, 941
BsoBI CYCGRG 3 cut(s) 97, 420, 575
Bsp120I GGGCCC 1 cut(s) 10
Bsp1286I GDGCHC 4 cut(s) 14, 56, 725, 925
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 5 cut(s) 60, 127, 540, 850, 868
Bsp1720I GCTNAGC 1 cut(s) 705
BspACI CCGC 8 cut(s) 80, 318, 465, 475, 484, 522, 701, 788
BspANI GGCC 6 cut(s) 12, 173, 210, 314, 617, 941
BspCNI CTCAG 2 cut(s) 697, 739
BspFNI CGCG 2 cut(s) 477, 602
BspLI GGNNCC 4 cut(s) 12, 473, 616, 870
BspPI GGATC 3 cut(s) 858, 863, 876
BspT107I GGYRCC 1 cut(s) 471
BsrBI CCGCTC 1 cut(s) 790
BsrDI GCAATG 1 cut(s) 737
BsrFI RCCGGY 2 cut(s) 310, 878
BsrGI TGTACA 1 cut(s) 648
BsrI ACTGG 2 cut(s) 903, 979
BssAI RCCGGY 2 cut(s) 310, 878
BssECI CCNNGG 6 cut(s) 27, 97, 98, 174, 328, 576
BssHII GCGCGC 1 cut(s) 600
BssMI GATC 5 cut(s) 60, 127, 540, 850, 868
BssNI GRCGYC 1 cut(s) 472
BssSI CACGAG 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 174
Bst2BI CACGAG 1 cut(s) 492
Bst2UI CCWGG 2 cut(s) 663, 797
Bst4CI ACNGT 2 cut(s) 388, 720
Bst6I CTCTTC 2 cut(s) 227, 342
BstACI GRCGYC 1 cut(s) 472
BstAPI GCANNNNNTGC 1 cut(s) 38
BstAUI TGTACA 1 cut(s) 648
BstC8I GCNNGC 5 cut(s) 208, 316, 602, 711, 744
BstDEI CTNAG 2 cut(s) 705, 747
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 2 cut(s) 254, 277
BstFNI CGCG 2 cut(s) 477, 602
BstH2I RGCGCY 1 cut(s) 475
BstHHI GCGC 4 cut(s) 398, 474, 602, 604
BstKTI GATC 5 cut(s) 63, 130, 543, 853, 871
BstMAI GTCTC 2 cut(s) 179, 394
BstMBI GATC 5 cut(s) 60, 127, 540, 850, 868
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 7 cut(s) 38, 216, 480, 483, 710, 752, 899
BstNI CCWGG 2 cut(s) 663, 797
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 7 cut(s) 96, 97, 378, 467, 661, 690, 795
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 2 cut(s) 14, 725
BstUI CGCG 2 cut(s) 477, 602
BstX2I RGATCY 1 cut(s) 868
BstYI RGATCY 1 cut(s) 868
BsuRI GGCC 6 cut(s) 12, 173, 210, 314, 617, 941
BtgI CCRYGG 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 254, 277
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 3 cut(s) 622, 725, 972
Cac8I GCNNGC 5 cut(s) 208, 316, 602, 711, 744
CaiI CAGNNNCTG 1 cut(s) 859
CfoI GCGC 4 cut(s) 398, 474, 602, 604
Cfr10I RCCGGY 2 cut(s) 310, 878
Cfr13I GGNCC 4 cut(s) 10, 11, 615, 939
Cfr9I CCCGGG 1 cut(s) 97
CsiI ACCWGGT 1 cut(s) 661
Csp6I GTAC 1 cut(s) 649
CviAII CATG 2 cut(s) 58, 113
CviQI GTAC 1 cut(s) 649
DdeI CTNAG 2 cut(s) 705, 747
DinI GGCGCC 1 cut(s) 473
DpnI GATC 5 cut(s) 62, 129, 542, 852, 870
DpnII GATC 5 cut(s) 60, 127, 540, 850, 868
DraIII CACNNNGTG 1 cut(s) 51
EaeI YGGCCR 2 cut(s) 171, 312
Eam1104I CTCTTC 2 cut(s) 227, 342
EarI CTCTTC 2 cut(s) 227, 342
EciI GGCGGA 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 2 cut(s) 14, 925
Eco88I CYCGRG 3 cut(s) 97, 420, 575
EcoO109I RGGNCCY 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 661, 795
EcoT14I CCWWGG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 259
EcoT38I GRGCYC 2 cut(s) 14, 925
EgeI GGCGCC 1 cut(s) 473
EheI GGCGCC 1 cut(s) 473
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 394
FaeI CATG 2 cut(s) 61, 116
FaiI YATR 6 cut(s) 59, 114, 404, 545, 668, 944
FaqI GGGAC 2 cut(s) 123, 446
FatI CATG 2 cut(s) 57, 112
FauI CCCGC 2 cut(s) 472, 529
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 475, 484, 702
FokI GGATG 2 cut(s) 261, 284
FriOI GRGCYC 2 cut(s) 14, 925
Fsp4HI GCNGC 3 cut(s) 475, 484, 702
FspBI CTAG 3 cut(s) 360, 365, 407
GlaI GCGC 4 cut(s) 397, 473, 601, 603
GluI GCNGC 3 cut(s) 475, 484, 702
GsuI CTGGAG 2 cut(s) 541, 996
HaeII RGCGCY 1 cut(s) 475
HaeIII GGCC 6 cut(s) 12, 173, 210, 314, 617, 941
HapII CCGG 7 cut(s) 98, 311, 380, 441, 468, 692, 879
HhaI GCGC 4 cut(s) 398, 474, 602, 604
Hin1I GRCGYC 1 cut(s) 472
Hin1II CATG 2 cut(s) 61, 116
Hin6I GCGC 4 cut(s) 396, 472, 600, 602
HinP1I GCGC 4 cut(s) 396, 472, 600, 602
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 3 cut(s) 324, 914, 960
HpaII CCGG 7 cut(s) 98, 311, 380, 441, 468, 692, 879
HphI GGTGA 5 cut(s) 37, 100, 300, 446, 874
Hpy166II GTNNAC 4 cut(s) 91, 446, 622, 772
Hpy188I TCNGA 8 cut(s) 119, 132, 286, 329, 502, 850, 913, 1008
Hpy188III TCNNGA 2 cut(s) 422, 558
Hpy8I GTNNAC 4 cut(s) 91, 446, 622, 772
HpyAV CCTTC 3 cut(s) 238, 525, 690
HpyCH4III ACNGT 2 cut(s) 388, 720
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 7 cut(s) 112, 257, 304, 627, 728, 826, 983
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 216, 480, 483, 710, 752, 899
HpyF3I CTNAG 2 cut(s) 705, 747
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 472
Hsp92II CATG 2 cut(s) 61, 116
HspAI GCGC 4 cut(s) 396, 472, 600, 602
KasI GGCGCC 1 cut(s) 471
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 5 cut(s) 60, 127, 540, 850, 868
LmnI GCTCC 2 cut(s) 59, 148
LweI GCATC 8 cut(s) 239, 244, 262, 266, 291, 769, 813, 970
MabI ACCWGGT 1 cut(s) 661
MaeI CTAG 3 cut(s) 360, 365, 407
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 4 cut(s) 43, 157, 452, 862
MalI GATC 5 cut(s) 62, 129, 542, 852, 870
MbiI CCGCTC 1 cut(s) 790
MboI GATC 5 cut(s) 60, 127, 540, 850, 868
MboII GAAGA 7 cut(s) 214, 217, 359, 503, 544, 573, 625
MflI RGATCY 1 cut(s) 868
MhlI GDGCHC 4 cut(s) 14, 56, 725, 925
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 8 cut(s) 21, 142, 153, 261, 652, 929, 945, 1000
MluNI TGGCCA 1 cut(s) 173
Mly113I GGCGCC 1 cut(s) 472
MmeI TCCRAC 2 cut(s) 97, 986
Mox20I TGGCCA 1 cut(s) 173
Mph1103I ATGCAT 1 cut(s) 259
MscI TGGCCA 1 cut(s) 173
MseI TTAA 3 cut(s) 20, 354, 948
Msp20I TGGCCA 1 cut(s) 173
MspA1I CMGCKG 2 cut(s) 318, 746
MspI CCGG 7 cut(s) 98, 311, 380, 441, 468, 692, 879
MspR9I CCNGG 7 cut(s) 98, 99, 380, 469, 663, 692, 797
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 2 cut(s) 663, 797
MvnI CGCG 2 cut(s) 477, 602
MwoI GCNNNNNNNGC 7 cut(s) 38, 216, 480, 483, 710, 752, 899
NarI GGCGCC 1 cut(s) 472
NciI CCSGG 5 cut(s) 98, 99, 380, 469, 692
NdeII GATC 5 cut(s) 60, 127, 540, 850, 868
NlaIII CATG 2 cut(s) 61, 116
NlaIV GGNNCC 4 cut(s) 12, 473, 616, 870
NmeAIII GCCGAG 1 cut(s) 904
NmuCI GTSAC 4 cut(s) 43, 157, 452, 862
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 1 cut(s) 116
PauI GCGCGC 1 cut(s) 600
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 3 cut(s) 324, 914, 960
PfoI TCCNGGA 1 cut(s) 795
PkrI GCNGC 3 cut(s) 476, 485, 703
Ple19I CGATCG 1 cut(s) 130
PluTI GGCGCC 1 cut(s) 475
Psp6I CCWGG 2 cut(s) 661, 795
PspGI CCWGG 2 cut(s) 661, 795
PspN4I GGNNCC 4 cut(s) 12, 473, 616, 870
PspOMI GGGCCC 1 cut(s) 10
PspPI GGNCC 4 cut(s) 10, 11, 615, 939
PstNI CAGNNNCTG 1 cut(s) 859
PsuI RGATCY 1 cut(s) 868
PteI GCGCGC 1 cut(s) 600
PvuI CGATCG 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
SaqAI TTAA 3 cut(s) 20, 354, 948
SatI GCNGC 3 cut(s) 475, 484, 702
Sau3AI GATC 5 cut(s) 60, 127, 540, 850, 868
Sau96I GGNCC 4 cut(s) 10, 11, 615, 939
ScrFI CCNGG 7 cut(s) 98, 99, 380, 469, 663, 692, 797
SduI GDGCHC 4 cut(s) 14, 56, 725, 925
SexAI ACCWGGT 1 cut(s) 661
SfaNI GCATC 8 cut(s) 239, 244, 262, 266, 291, 769, 813, 970
SfcI CTRYAG 1 cut(s) 180
SfoI GGCGCC 1 cut(s) 473
SmaI CCCGGG 1 cut(s) 99
Sse9I AATT 8 cut(s) 21, 142, 153, 261, 652, 929, 945, 1000
SsiI CCGC 8 cut(s) 80, 318, 465, 475, 484, 522, 701, 788
SspDI GGCGCC 1 cut(s) 471
SspMI CTAG 3 cut(s) 360, 365, 407
StyD4I CCNGG 7 cut(s) 96, 97, 378, 467, 661, 690, 795
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 388, 720
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 336, 636
TasI AATT 8 cut(s) 21, 142, 153, 261, 652, 929, 945, 1000
TatI WGTACW 1 cut(s) 648
TauI GCSGC 3 cut(s) 477, 486, 704
TfiI GAWTC 3 cut(s) 324, 914, 960
Tru1I TTAA 3 cut(s) 20, 354, 948
Tru9I TTAA 3 cut(s) 20, 354, 948
TscAI CASTG 3 cut(s) 629, 725, 979
TseFI GTSAC 4 cut(s) 43, 157, 452, 862
Tsp45I GTSAC 4 cut(s) 43, 157, 452, 862
TspGWI ACGGA 1 cut(s) 881
TspMI CCCGGG 1 cut(s) 97
TspRI CASTG 3 cut(s) 629, 725, 979
XceI RCATGY 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 949
XmaI CCCGGG 1 cut(s) 97
XspI CTAG 3 cut(s) 360, 365, 407
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.