MD13G1097700.v1.1

Peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0001761
Physical Location & Seq
Forward (+)
6935956 .. 6937164
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1097700.v1.1.491

Sequence Viewer

Length: 1020 bp
ATGGAGATGGGCCCTCGTTTAATTGCCACGGCAGTTTTTGTCGTCATCTTGTGTTCCATGATCGTCGTTCCTTGTTCGGCGGATGAGGTGAACAACCCGGGGAATGGGTTGCATGTTGGATTCTACGATCGGAAATGTCCCAATTTGGAGCAAATTGTAACTGACGTTGTGGCCAAGGCTGTAGAGAGGGACCAAAAGCTTCCTGCTGGCCTCATTCGCCTCTTCTTCCACGACTGCTTTGTGAAGGGATGCGATGCATCAATTCTGCTGGATGCCACGCCCTCTGACGAGCCCGTAGAGATGCAATCACCGGCCAGCGGTGGAATTCGAGGTATCGAAGTCATTGAAGAGATCAAGGCTAGGCTAGAGCAGGAATGCCCGGAAACCGTCTCCTGCGCCGACATACTAGCCTTTGCCACTCGGGAAGCTGTGGCTCTCTCCGGTTTACCCCGTCACCAAGTCCCCGCCGGACGCCGCGACAGCCGCACTTCCCGTGCCTCCGATGTCATTCTTCCTTCTCCCGCAACACCAATGGACGAGATCATAGACTTCTTCTCCAGAAGAAACTTGACCCCCGAGGAAATGGTCGTCTTGTTTGGCGCGCACTCCATCGGGGCGGTCCACTGCAACTTCTTCGATTACAGGCTGTACAATTTCGCACCAGGCATGCCACAAGACCCTTCACTAAACCCAGTGTTTGCGGCTGAGCTGGCTCAAAAGTGCCCTGCACCCAACACATTGCCAGCTGAGGAGGCTAAAAACAGGGTTGTCGACTTAGATGCCACACCGCTTGTCCTGGACAATCACTATTACACGAACCTGATGCAAGGGAGAGCATTGATGCAATTGGATCAGGCTCTGGGGACCGATCCTCGCACCGGCGCGGAGGTGGCGAAACTGGCTATTAGGTCTGATTCTTGGGCTCGGCAATTTGTTAGGGCCATAATTAAGATGGGGAGAATCAATGTTCTCACTGGAGATGCAGGAGAGATAAGAAAGAATTGTCGGAACTTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

340

Amino Acids

37.15

Weight (kDa)

5.27

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 53 - 301 2.5e-77 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 771
AccII CGCG 3 cut(s) 477, 602, 884
AclWI GGATC 2 cut(s) 858, 863
AcoI YGGCCR 2 cut(s) 171, 312
AcsI RAATTY 1 cut(s) 324
AcyI GRCGYC 1 cut(s) 472
AfaI GTAC 1 cut(s) 650
AfiI CCNNNNNNNGG 3 cut(s) 104, 317, 878
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 2 cut(s) 661, 795
AluBI AGCT 4 cut(s) 199, 428, 709, 746
AluI AGCT 4 cut(s) 199, 428, 709, 746
Alw26I GTCTC 1 cut(s) 394
AlwI GGATC 2 cut(s) 858, 863
AlwNI CAGNNNCTG 1 cut(s) 859
Ama87I CYCGRG 3 cut(s) 97, 420, 575
AoxI GGCC 5 cut(s) 10, 171, 208, 312, 939
ApaI GGGCCC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 324
AspLEI GCGC 4 cut(s) 398, 602, 604, 884
AspS9I GGNCC 6 cut(s) 10, 11, 190, 619, 864, 939
AsuC2I CCSGG 3 cut(s) 98, 99, 380
AsuHPI GGTGA 3 cut(s) 100, 300, 446
AvaI CYCGRG 3 cut(s) 97, 420, 575
AvaII GGWCC 3 cut(s) 190, 619, 864
BaeGI GKGCMC 2 cut(s) 14, 725
BalI TGGCCA 1 cut(s) 173
BanII GRGCYC 3 cut(s) 14, 294, 925
BbvCI CCTCAGC 1 cut(s) 747
BccI CCATC 2 cut(s) 617, 946
BceAI ACGGC 1 cut(s) 45
BcgI CGANNNNNNTGC 6 cut(s) 616, 650, 761, 795, 805, 839
BciT130I CCWGG 2 cut(s) 663, 797
BcnI CCSGG 3 cut(s) 98, 99, 380
BcoDI GTCTC 1 cut(s) 394
BfaI CTAG 3 cut(s) 360, 365, 407
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 3 cut(s) 475, 484, 702
BlpI GCTNAGC 1 cut(s) 705
BlsI GCNGC 3 cut(s) 476, 485, 703
Bme1390I CCNGG 5 cut(s) 98, 99, 380, 663, 797
Bme18I GGWCC 3 cut(s) 190, 619, 864
BmeT110I CYCGRG 3 cut(s) 97, 420, 575
BmgT120I GGNCC 6 cut(s) 10, 11, 190, 619, 864, 939
BmiI GGNNCC 3 cut(s) 12, 191, 865
BmrFI CCNGG 5 cut(s) 98, 99, 380, 663, 797
BmrI ACTGGG 1 cut(s) 686
BmsI GCATC 9 cut(s) 239, 244, 262, 266, 291, 769, 813, 831, 970
BmuI ACTGGG 1 cut(s) 686
BpmI CTGGAG 2 cut(s) 541, 996
Bpu10I CCTNAGC 1 cut(s) 747
Bpu1102I GCTNAGC 1 cut(s) 705
BpuMI CCSGG 3 cut(s) 98, 99, 380
BsaHI GRCGYC 1 cut(s) 472
BsaJI CCNNGG 5 cut(s) 27, 97, 98, 174, 576
BsaWI WCCGGW 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 539, 569
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 317, 878
Bse118I RCCGGY 2 cut(s) 310, 878
Bse1I ACTGG 3 cut(s) 692, 903, 979
Bse3DI GCAATG 1 cut(s) 737
BseBI CCWGG 2 cut(s) 663, 797
BseDI CCNNGG 5 cut(s) 27, 97, 98, 174, 576
BseGI GGATG 3 cut(s) 88, 254, 277
BseLI CCNNNNNNNGG 3 cut(s) 104, 317, 878
BseMI GCAATG 1 cut(s) 737
BseMII CTCAG 2 cut(s) 696, 738
BseNI ACTGG 3 cut(s) 692, 903, 979
BsePI GCGCGC 1 cut(s) 600
BseRI GAGGAG 1 cut(s) 764
BseSI GKGCMC 2 cut(s) 14, 725
BsgI GTGCAG 1 cut(s) 711
Bsh1236I CGCG 3 cut(s) 477, 602, 884
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 5 cut(s) 12, 173, 210, 314, 941
BsiEI CGRYCG 1 cut(s) 130
BsiHKCI CYCGRG 3 cut(s) 97, 420, 575
BsiSI CCGG 6 cut(s) 98, 311, 380, 441, 468, 879
BslFI GGGAC 4 cut(s) 123, 203, 446, 877
BslI CCNNNNNNNGG 3 cut(s) 104, 317, 878
BsmAI GTCTC 1 cut(s) 394
BsmBI CGTCTC 1 cut(s) 394
BsmFI GGGAC 4 cut(s) 123, 203, 446, 877
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 5 cut(s) 12, 173, 210, 314, 941
BsoBI CYCGRG 3 cut(s) 97, 420, 575
Bsp120I GGGCCC 1 cut(s) 10
Bsp1286I GDGCHC 4 cut(s) 14, 294, 725, 925
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 6 cut(s) 60, 127, 351, 540, 850, 868
Bsp1720I GCTNAGC 1 cut(s) 705
BspANI GGCC 5 cut(s) 12, 173, 210, 314, 941
BspCNI CTCAG 2 cut(s) 697, 739
BspFNI CGCG 3 cut(s) 477, 602, 884
BspLI GGNNCC 3 cut(s) 12, 191, 865
BspPI GGATC 2 cut(s) 858, 863
BsrDI GCAATG 1 cut(s) 737
BsrFI RCCGGY 2 cut(s) 310, 878
BsrGI TGTACA 1 cut(s) 648
BsrI ACTGG 3 cut(s) 692, 903, 979
BssAI RCCGGY 2 cut(s) 310, 878
BssECI CCNNGG 5 cut(s) 27, 97, 98, 174, 576
BssHII GCGCGC 1 cut(s) 600
BssMI GATC 6 cut(s) 60, 127, 351, 540, 850, 868
BssNI GRCGYC 1 cut(s) 472
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 663, 797
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 2 cut(s) 227, 342
BstACI GRCGYC 1 cut(s) 472
BstAUI TGTACA 1 cut(s) 648
BstC8I GCNNGC 6 cut(s) 208, 316, 602, 668, 711, 744
BstDEI CTNAG 3 cut(s) 705, 747, 775
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 88, 254, 277
BstFNI CGCG 3 cut(s) 477, 602, 884
BstHHI GCGC 4 cut(s) 398, 602, 604, 884
BstKTI GATC 6 cut(s) 63, 130, 354, 543, 853, 871
BstMAI GTCTC 1 cut(s) 394
BstMBI GATC 6 cut(s) 60, 127, 351, 540, 850, 868
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 7 cut(s) 216, 480, 483, 710, 752, 890, 899
BstNI CCWGG 2 cut(s) 663, 797
BstNSI RCATGY 2 cut(s) 116, 670
BstSCI CCNGG 5 cut(s) 96, 97, 378, 661, 795
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 2 cut(s) 14, 725
BstUI CGCG 3 cut(s) 477, 602, 884
BsuRI GGCC 5 cut(s) 12, 173, 210, 314, 941
BtgI CCRYGG 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 3 cut(s) 88, 254, 277
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 3 cut(s) 622, 699, 972
Cac8I GCNNGC 6 cut(s) 208, 316, 602, 668, 711, 744
CaiI CAGNNNCTG 1 cut(s) 859
CfoI GCGC 4 cut(s) 398, 602, 604, 884
Cfr10I RCCGGY 2 cut(s) 310, 878
Cfr13I GGNCC 6 cut(s) 10, 11, 190, 619, 864, 939
Cfr9I CCCGGG 1 cut(s) 97
CseI GACGC 1 cut(s) 480
Csp6I GTAC 1 cut(s) 649
CspCI CAANNNNNGTGG 2 cut(s) 772, 807
CviAII CATG 3 cut(s) 58, 113, 667
CviQI GTAC 1 cut(s) 649
DdeI CTNAG 3 cut(s) 705, 747, 775
DpnI GATC 6 cut(s) 62, 129, 353, 542, 852, 870
DpnII GATC 6 cut(s) 60, 127, 351, 540, 850, 868
EaeI YGGCCR 2 cut(s) 171, 312
Eam1104I CTCTTC 2 cut(s) 227, 342
EarI CTCTTC 2 cut(s) 227, 342
EciI GGCGGA 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 3 cut(s) 14, 294, 925
Eco47I GGWCC 3 cut(s) 190, 619, 864
Eco88I CYCGRG 3 cut(s) 97, 420, 575
EcoO109I RGGNCCY 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 324
EcoRII CCWGG 2 cut(s) 661, 795
EcoT14I CCWWGG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 259
EcoT38I GRGCYC 3 cut(s) 14, 294, 925
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 394
FaeI CATG 3 cut(s) 61, 116, 670
FaiI YATR 6 cut(s) 59, 114, 404, 545, 668, 944
FaqI GGGAC 4 cut(s) 123, 203, 446, 877
FatI CATG 3 cut(s) 57, 112, 666
FauI CCCGC 2 cut(s) 472, 529
FblI GTMKAC 1 cut(s) 771
Fnu4HI GCNGC 3 cut(s) 475, 484, 702
FokI GGATG 3 cut(s) 95, 261, 284
FriOI GRGCYC 3 cut(s) 14, 294, 925
Fsp4HI GCNGC 3 cut(s) 475, 484, 702
FspBI CTAG 3 cut(s) 360, 365, 407
GlaI GCGC 4 cut(s) 397, 601, 603, 883
GluI GCNGC 3 cut(s) 475, 484, 702
GsuI CTGGAG 2 cut(s) 541, 996
HaeIII GGCC 5 cut(s) 12, 173, 210, 314, 941
HapII CCGG 6 cut(s) 98, 311, 380, 441, 468, 879
HgaI GACGC 1 cut(s) 480
HhaI GCGC 4 cut(s) 398, 602, 604, 884
Hin1I GRCGYC 1 cut(s) 472
Hin1II CATG 3 cut(s) 61, 116, 670
Hin6I GCGC 4 cut(s) 396, 600, 602, 882
HinP1I GCGC 4 cut(s) 396, 600, 602, 882
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 3 cut(s) 120, 914, 960
HpaII CCGG 6 cut(s) 98, 311, 380, 441, 468, 879
HphI GGTGA 3 cut(s) 100, 300, 446
Hpy166II GTNNAC 4 cut(s) 91, 446, 622, 772
Hpy188I TCNGA 5 cut(s) 132, 286, 502, 913, 1008
Hpy188III TCNNGA 2 cut(s) 422, 558
Hpy8I GTNNAC 4 cut(s) 91, 446, 622, 772
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 3 cut(s) 238, 525, 690
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 8 cut(s) 112, 257, 304, 627, 728, 826, 844, 983
HpyF10VI GCNNNNNNNGC 7 cut(s) 216, 480, 483, 710, 752, 890, 899
HpyF3I CTNAG 3 cut(s) 705, 747, 775
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 472
Hsp92II CATG 3 cut(s) 61, 116, 670
HspAI GCGC 4 cut(s) 396, 600, 602, 882
Kzo9I GATC 6 cut(s) 60, 127, 351, 540, 850, 868
LmnI GCTCC 1 cut(s) 148
LweI GCATC 9 cut(s) 239, 244, 262, 266, 291, 769, 813, 831, 970
MaeI CTAG 3 cut(s) 360, 365, 407
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 157, 452
MalI GATC 6 cut(s) 62, 129, 353, 542, 852, 870
MboI GATC 6 cut(s) 60, 127, 351, 540, 850, 868
MboII GAAGA 7 cut(s) 214, 217, 359, 503, 544, 573, 625
MfeI CAATTG 1 cut(s) 845
MhlI GDGCHC 4 cut(s) 14, 294, 725, 925
MlsI TGGCCA 1 cut(s) 173
MluNI TGGCCA 1 cut(s) 173
MmeI TCCRAC 2 cut(s) 97, 986
Mox20I TGGCCA 1 cut(s) 173
Mph1103I ATGCAT 1 cut(s) 259
MscI TGGCCA 1 cut(s) 173
MseI TTAA 3 cut(s) 20, 948, 1014
Msp20I TGGCCA 1 cut(s) 173
MspA1I CMGCKG 2 cut(s) 318, 746
MspI CCGG 6 cut(s) 98, 311, 380, 441, 468, 879
MspR9I CCNGG 5 cut(s) 98, 99, 380, 663, 797
MunI CAATTG 1 cut(s) 845
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 2 cut(s) 663, 797
MvnI CGCG 3 cut(s) 477, 602, 884
MwoI GCNNNNNNNGC 7 cut(s) 216, 480, 483, 710, 752, 890, 899
NciI CCSGG 3 cut(s) 98, 99, 380
NdeII GATC 6 cut(s) 60, 127, 351, 540, 850, 868
NlaIII CATG 3 cut(s) 61, 116, 670
NlaIV GGNNCC 3 cut(s) 12, 191, 865
NmeAIII GCCGAG 1 cut(s) 904
NmuCI GTSAC 1 cut(s) 452
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 2 cut(s) 116, 670
PaeI GCATGC 1 cut(s) 670
PauI GCGCGC 1 cut(s) 600
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 3 cut(s) 120, 914, 960
PfoI TCCNGGA 1 cut(s) 795
PkrI GCNGC 3 cut(s) 476, 485, 703
Ple19I CGATCG 1 cut(s) 130
Psp6I CCWGG 2 cut(s) 661, 795
PspGI CCWGG 2 cut(s) 661, 795
PspN4I GGNNCC 3 cut(s) 12, 191, 865
PspOMI GGGCCC 1 cut(s) 10
PspPI GGNCC 6 cut(s) 10, 11, 190, 619, 864, 939
PstNI CAGNNNCTG 1 cut(s) 859
PteI GCGCGC 1 cut(s) 600
PvuI CGATCG 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
SalI GTCGAC 1 cut(s) 770
SaqAI TTAA 3 cut(s) 20, 948, 1014
SatI GCNGC 3 cut(s) 475, 484, 702
Sau3AI GATC 6 cut(s) 60, 127, 351, 540, 850, 868
Sau96I GGNCC 6 cut(s) 10, 11, 190, 619, 864, 939
ScrFI CCNGG 5 cut(s) 98, 99, 380, 663, 797
SduI GDGCHC 4 cut(s) 14, 294, 725, 925
SfaNI GCATC 9 cut(s) 239, 244, 262, 266, 291, 769, 813, 831, 970
SfcI CTRYAG 1 cut(s) 180
SgrAI CRCCGGYG 1 cut(s) 878
SinI GGWCC 3 cut(s) 190, 619, 864
SmaI CCCGGG 1 cut(s) 99
SphI GCATGC 1 cut(s) 670
SspMI CTAG 3 cut(s) 360, 365, 407
StyD4I CCNGG 5 cut(s) 96, 97, 378, 661, 795
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 1 cut(s) 168
TaqI TCGA 4 cut(s) 328, 336, 636, 771
TaqII GACCGA 1 cut(s) 881
TatI WGTACW 1 cut(s) 648
TauI GCSGC 3 cut(s) 477, 486, 704
TfiI GAWTC 3 cut(s) 120, 914, 960
Tru1I TTAA 3 cut(s) 20, 948, 1014
Tru9I TTAA 3 cut(s) 20, 948, 1014
TscAI CASTG 3 cut(s) 629, 699, 979
TseFI GTSAC 1 cut(s) 452
Tsp45I GTSAC 1 cut(s) 452
TspMI CCCGGG 1 cut(s) 97
TspRI CASTG 3 cut(s) 629, 699, 979
VpaK11BI GGWCC 3 cut(s) 190, 619, 864
XapI RAATTY 1 cut(s) 324
XceI RCATGY 2 cut(s) 116, 670
XcmI CCANNNNNNNNNTGG 1 cut(s) 949
XmaI CCCGGG 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 771
XspI CTAG 3 cut(s) 360, 365, 407
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.