Rw4G027240

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001761
Physical Location & Seq
Reverse (-)
53655231 .. 53657839
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G027240.1

Sequence Viewer

Length: 924 bp
ATGGCTCTTATTGGTGTGAGTCGACTGATTTTCAGATACATATCTTTCTTCCTTCTCATTCTGCACAAGGTCAGGAACGGCTTACATGTCGGGTTTTACGCTTCGAGTTGCCCCAAGGTTGAGGACATTGTTGCTGAGGTTGTGGCCCGTGTTCATGAGCAAGATCCCAAGCTCCCTCCTGCCCTCCTCCGCCTTTTTTTCCATGATTGCTCTGTCAAGGGTTGTGATGCCTCGATCTTGTTGGAGGCGACACCATCTGGTGAGCCTATAGAGAAAACATCACCAGCCAATTGTGAAACACTCAGAGGTCTTGAGGTTGTTGATGAGATCAAAGCCCAGGTAGAGCAGGAGTGCCCCCAAACTGTATCCTGCGCTGACATATTAGCATTTGCTGCTCGGGAAGCCGTTTACCTAGCCGGCCTACCCCGTCACAATGTCCCAGCCGGTCGCCGTGACAGTAGGACTTCACGTGCTTCTGATGTCAATGTCAACCTCCCTACACCTGTAACGCCTCTGGGAGACATTATAGACATGTTCGCCAAAAGAGGCTTGGCAACAGAAGATATGGTTGTCTTGTCCGACAGATTATACAAATATAGCGAAGCTCAGCCCCAAGACCCTTCCCTGGACCCAACCTATGCTGATGAGCTAGCCGGAAAGTGCCCAGCACCAGACACATTACCTGCGGAGCAAGCATTACGTACAATGGTGGACTGTGATCCAACAACACCACTTGACCTCGACAATCAGTACTATTACGTACTGACTACTGATCCCCAAACCGGAGCAATTGTGTACAGAATGGCCGCTAGCTCTGAAACTTGGAGTAAAAAATTTCTCAAGGCCATGATCAAGGTGGGGAGAATAAATGTTCTCACCAAAGATGAAGGAGAGATAAGGACAAACTGCCGGGCGTATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

307

Amino Acids

33.89

Weight (kDa)

5.26

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 257 1e-55 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 691
AccI GTMKAC 1 cut(s) 22
AciI CCGC 3 cut(s) 190, 686, 807
AclWI GGATC 3 cut(s) 158, 713, 767
AcoI YGGCCR 1 cut(s) 804
AcsI RAATTY 1 cut(s) 833
AcvI CACGTG 1 cut(s) 470
AfaI GTAC 4 cut(s) 703, 752, 762, 797
AfiI CCNNNNNNNGG 2 cut(s) 625, 782
AflIII ACRYGT 2 cut(s) 85, 531
AjnI CCWGG 2 cut(s) 336, 624
AluBI AGCT 4 cut(s) 172, 605, 649, 813
AluI AGCT 4 cut(s) 172, 605, 649, 813
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 3 cut(s) 158, 713, 767
Ama87I CYCGRG 1 cut(s) 396
AoxI GGCC 4 cut(s) 144, 418, 804, 843
ApeKI GCWGC 1 cut(s) 392
ApoI RAATTY 1 cut(s) 833
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 2 cut(s) 145, 628
AsuC2I CCSGG 1 cut(s) 911
AsuHPI GGTGA 3 cut(s) 272, 273, 868
AsuNHI GCTAGC 2 cut(s) 649, 809
AvaI CYCGRG 1 cut(s) 396
AvaII GGWCC 1 cut(s) 628
BaeGI GKGCMC 2 cut(s) 356, 665
BbrPI CACGTG 1 cut(s) 470
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 379
BccI CCATC 1 cut(s) 262
BceAI ACGGC 3 cut(s) 94, 389, 435
BciT130I CCWGG 2 cut(s) 338, 626
BciVI GTATCC 1 cut(s) 376
BclI TGATCA 1 cut(s) 849
BcnI CCSGG 1 cut(s) 911
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 3 cut(s) 413, 650, 810
BfmI CTRYAG 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 691
BfuI GTATCC 1 cut(s) 376
BisI GCNGC 2 cut(s) 393, 807
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 2 cut(s) 394, 808
BmcAI AGTACT 1 cut(s) 752
Bme1390I CCNGG 3 cut(s) 338, 626, 911
Bme18I GGWCC 1 cut(s) 628
BmeT110I CYCGRG 1 cut(s) 396
BmgT120I GGNCC 2 cut(s) 145, 628
BmiI GGNNCC 1 cut(s) 630
BmrFI CCNGG 3 cut(s) 338, 626, 911
BmsI GCATC 1 cut(s) 217
BmtI GCTAGC 2 cut(s) 653, 813
Bpu10I CCTNAGC 1 cut(s) 135
Bpu1102I GCTNAGC 1 cut(s) 606
BpuEI CTTGAG 2 cut(s) 332, 824
BpuMI CCSGG 1 cut(s) 911
BsaAI YACGTR 3 cut(s) 470, 701, 760
BsaBI GATNNNNATC 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 114, 336, 624
BsaWI WCCGGW 1 cut(s) 782
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 2 cut(s) 625, 782
Bse118I RCCGGY 2 cut(s) 416, 443
Bse8I GATNNNNATC 1 cut(s) 40
BseBI CCWGG 2 cut(s) 338, 626
BseDI CCNNGG 3 cut(s) 114, 336, 624
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 2 cut(s) 625, 782
BseMII CTCAG 3 cut(s) 126, 316, 620
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 2 cut(s) 356, 665
BseXI GCAGC 1 cut(s) 379
BseYI CCCAGC 2 cut(s) 439, 664
BsgI GTGCAG 1 cut(s) 47
Bsh1285I CGRYCG 1 cut(s) 448
BshFI GGCC 4 cut(s) 146, 420, 806, 845
BsiEI CGRYCG 1 cut(s) 448
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 5 cut(s) 417, 444, 654, 783, 910
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 2 cut(s) 625, 782
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 4 cut(s) 146, 420, 806, 845
BsoBI CYCGRG 1 cut(s) 396
Bsp1286I GDGCHC 2 cut(s) 356, 665
Bsp1407I TGTACA 1 cut(s) 795
Bsp143I GATC 6 cut(s) 163, 234, 327, 718, 772, 849
Bsp1720I GCTNAGC 1 cut(s) 606
BspACI CCGC 3 cut(s) 190, 686, 807
BspANI GGCC 4 cut(s) 146, 420, 806, 845
BspCNI CTCAG 3 cut(s) 127, 315, 619
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 630
BspMI ACCTGC 1 cut(s) 691
BspOI GCTAGC 2 cut(s) 653, 813
BspPI GGATC 3 cut(s) 158, 713, 767
BsrFI RCCGGY 2 cut(s) 416, 443
BsrGI TGTACA 1 cut(s) 795
BssAI RCCGGY 2 cut(s) 416, 443
BssECI CCNNGG 3 cut(s) 114, 336, 624
BssMI GATC 6 cut(s) 163, 234, 327, 718, 772, 849
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 338, 626
Bst4CI ACNGT 3 cut(s) 364, 458, 716
BstAPI GCANNNNNTGC 1 cut(s) 392
BstAUI TGTACA 1 cut(s) 795
BstBAI YACGTR 3 cut(s) 470, 701, 760
BstC8I GCNNGC 4 cut(s) 418, 651, 693, 811
BstDEI CTNAG 3 cut(s) 135, 302, 606
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 6 cut(s) 166, 237, 330, 721, 775, 852
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 6 cut(s) 163, 234, 327, 718, 772, 849
BstMCI CGRYCG 1 cut(s) 448
BstMWI GCNNNNNNNGC 3 cut(s) 392, 401, 692
BstNI CCWGG 2 cut(s) 338, 626
BstNSI RCATGY 2 cut(s) 89, 535
BstSCI CCNGG 3 cut(s) 336, 624, 909
BstSFI CTRYAG 1 cut(s) 267
BstSLI GKGCMC 2 cut(s) 356, 665
BstSNI TACGTA 2 cut(s) 701, 760
BstV1I GCAGC 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 4 cut(s) 146, 420, 806, 845
BveI ACCTGC 1 cut(s) 691
Cac8I GCNNGC 4 cut(s) 418, 651, 693, 811
CciI TCATGA 1 cut(s) 154
CfoI GCGC 1 cut(s) 374
Cfr10I RCCGGY 2 cut(s) 416, 443
Cfr13I GGNCC 2 cut(s) 145, 628
Csp6I GTAC 4 cut(s) 702, 751, 761, 796
CviAII CATG 5 cut(s) 86, 155, 203, 532, 847
CviQI GTAC 4 cut(s) 702, 751, 761, 796
DdeI CTNAG 3 cut(s) 135, 302, 606
DpnI GATC 6 cut(s) 165, 236, 329, 720, 774, 851
DpnII GATC 6 cut(s) 163, 234, 327, 718, 772, 849
EaeI YGGCCR 1 cut(s) 804
EciI GGCGGA 1 cut(s) 179
Eco105I TACGTA 2 cut(s) 701, 760
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 628
Eco72I CACGTG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 396
EcoRII CCWGG 2 cut(s) 336, 624
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 5 cut(s) 89, 158, 206, 535, 850
FaqI GGGAC 1 cut(s) 422
FatI CATG 5 cut(s) 85, 154, 202, 531, 846
FbaI TGATCA 1 cut(s) 849
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 393, 807
Fsp4HI GCNGC 2 cut(s) 393, 807
FspBI CTAG 3 cut(s) 413, 650, 810
GlaI GCGC 1 cut(s) 373
GluI GCNGC 2 cut(s) 393, 807
GsaI CCCAGC 2 cut(s) 443, 668
HaeIII GGCC 4 cut(s) 146, 420, 806, 845
HapII CCGG 5 cut(s) 417, 444, 654, 783, 910
HhaI GCGC 1 cut(s) 374
Hin1II CATG 5 cut(s) 89, 158, 206, 535, 850
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HincII GTYRAC 2 cut(s) 23, 490
HindII GTYRAC 2 cut(s) 23, 490
HinfI GANTC 1 cut(s) 19
HpaII CCGG 5 cut(s) 417, 444, 654, 783, 910
HphI GGTGA 3 cut(s) 272, 273, 868
Hpy166II GTNNAC 5 cut(s) 23, 409, 490, 712, 796
Hpy188I TCNGA 5 cut(s) 35, 305, 478, 580, 817
Hpy188III TCNNGA 4 cut(s) 73, 155, 311, 398
Hpy8I GTNNAC 5 cut(s) 23, 409, 490, 712, 796
HpyAV CCTTC 3 cut(s) 62, 630, 881
HpyCH4III ACNGT 3 cut(s) 364, 458, 716
HpyCH4IV ACGT 3 cut(s) 469, 700, 759
HpyCH4V TGCA 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 401, 692
HpyF3I CTNAG 3 cut(s) 135, 302, 606
HpySE526I ACGT 3 cut(s) 469, 700, 759
Hsp92II CATG 5 cut(s) 89, 158, 206, 535, 850
HspAI GCGC 1 cut(s) 372
KroI GCCGGC 1 cut(s) 416
KroNI GCCGGC 1 cut(s) 418
Ksp22I TGATCA 1 cut(s) 849
Kzo9I GATC 6 cut(s) 163, 234, 327, 718, 772, 849
LmnI GCTCC 3 cut(s) 177, 688, 785
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 1 cut(s) 217
MaeI CTAG 3 cut(s) 413, 650, 810
MaeII ACGT 3 cut(s) 469, 700, 759
MaeIII GTNAC 3 cut(s) 428, 452, 505
MalI GATC 6 cut(s) 165, 236, 329, 720, 774, 851
MboI GATC 6 cut(s) 163, 234, 327, 718, 772, 849
MboII GAAGA 2 cut(s) 40, 572
MfeI CAATTG 2 cut(s) 289, 789
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 2 cut(s) 356, 665
MluCI AATT 3 cut(s) 289, 789, 833
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 3 cut(s) 222, 603, 746
MroNI GCCGGC 1 cut(s) 416
MspI CCGG 5 cut(s) 417, 444, 654, 783, 910
MspR9I CCNGG 3 cut(s) 338, 626, 911
MunI CAATTG 2 cut(s) 289, 789
MvaI CCWGG 2 cut(s) 338, 626
MwoI GCNNNNNNNGC 3 cut(s) 392, 401, 692
NaeI GCCGGC 1 cut(s) 418
NciI CCSGG 1 cut(s) 911
NdeII GATC 6 cut(s) 163, 234, 327, 718, 772, 849
NgoMIV GCCGGC 1 cut(s) 416
NheI GCTAGC 2 cut(s) 649, 809
NlaIII CATG 5 cut(s) 89, 158, 206, 535, 850
NlaIV GGNNCC 1 cut(s) 630
NmuCI GTSAC 2 cut(s) 428, 452
NspI RCATGY 2 cut(s) 89, 535
PagI TCATGA 1 cut(s) 154
PciI ACATGT 2 cut(s) 85, 531
PdiI GCCGGC 1 cut(s) 418
PkrI GCNGC 2 cut(s) 394, 808
PleI GAGTC 1 cut(s) 27
PmaCI CACGTG 1 cut(s) 470
PmlI CACGTG 1 cut(s) 470
PpsI GAGTC 1 cut(s) 27
Ppu21I YACGTR 3 cut(s) 470, 701, 760
PscI ACATGT 2 cut(s) 85, 531
Psp6I CCWGG 2 cut(s) 336, 624
PspCI CACGTG 1 cut(s) 470
PspFI CCCAGC 2 cut(s) 439, 664
PspGI CCWGG 2 cut(s) 336, 624
PspN4I GGNNCC 1 cut(s) 630
PspPI GGNCC 2 cut(s) 145, 628
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 4 cut(s) 703, 752, 762, 797
RsaNI GTAC 4 cut(s) 702, 751, 761, 796
SalI GTCGAC 1 cut(s) 21
SatI GCNGC 2 cut(s) 393, 807
Sau3AI GATC 6 cut(s) 163, 234, 327, 718, 772, 849
Sau96I GGNCC 2 cut(s) 145, 628
ScaI AGTACT 1 cut(s) 752
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 3 cut(s) 338, 626, 911
SduI GDGCHC 2 cut(s) 356, 665
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 628
SmlI CTYRAG 2 cut(s) 311, 839
SmoI CTYRAG 2 cut(s) 311, 839
SnaBI TACGTA 2 cut(s) 701, 760
Sse9I AATT 3 cut(s) 289, 789, 833
SsiI CCGC 3 cut(s) 190, 686, 807
SspMI CTAG 3 cut(s) 413, 650, 810
StyD4I CCNGG 3 cut(s) 336, 624, 909
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 3 cut(s) 364, 458, 716
TaiI ACGT 3 cut(s) 472, 703, 762
TaqI TCGA 4 cut(s) 22, 104, 233, 741
TasI AATT 3 cut(s) 289, 789, 833
TatI WGTACW 2 cut(s) 750, 795
TauI GCSGC 1 cut(s) 809
TseFI GTSAC 2 cut(s) 428, 452
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 2 cut(s) 428, 452
TspDTI ATGAA 2 cut(s) 143, 900
VpaK11BI GGWCC 1 cut(s) 628
XapI RAATTY 1 cut(s) 833
XceI RCATGY 2 cut(s) 89, 535
XcmI CCANNNNNNNNNTGG 2 cut(s) 547, 853
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 3 cut(s) 413, 650, 810
ZrmI AGTACT 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.