Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8369943.1

Orthogroup ID

OG0001761

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1118

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8369943.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 637 bp

ggttgtgatgcctcgatcttgttggaggcgacaccatctgctgagcctatagagaaaacatcaccagccaattgtgaaacactcagaggtcttgaggttgttgatgagatcaaagcccaggtagagcaggagtgcccccaaactgtatcctgcgctgacatattagcatttgctgctctggaagccgtttacctagccggcctaccccgtcacaatgtcccagccggtcgccgtgacattaggacttcacgtgcttctgatgtcaatgtcaacctccctacacctgtaacgcctctgggagacattatagacatgttcgccaaaagaggcttggcaacagaagatatgccccaagacccttccttggacccaacctatgctgatgagctagccggaaagtgcccagcaccagacacattacatgcggagcaagcattacgtacaatggtggactgtgatccaacaacaccacttgacctcgacaatcagtactatgtgaacctgatgagagggagaggcttgcttcaatcggataaagtactgactactgatccccaaaccggagcaattgtgtacagaatggccgctagctctgaaacttggagtaaaattaaaatttctcaaggccatgatcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

212

Amino Acids

22.92

Weight (kDa)

4.51

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001761)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25120 FvH4_4g25140
malus_domestica	MD13G1097600.v1.1 MD13G1097700.v1.1 MD16G1098700.v1.1 MD16G1098800.v1.1
prunus_persica	Prupe.1G247700_v2.0.a1 Prupe.1G247800_v2.0.a1
pyrus_communis	pycom13g08540
rosa_chinensis	RchiOBHm_Chr4g0432321 RchiOBHm_Chr4g0432331 RchiOBHm_Chr4g0433321 RchiOBHm_Chr4g0433341
rosa_laevigata	RLG00000001640 RLG00000006762 RLG00000006763 RLG00000006853
rosa_multiflora	Rmu_co8257897.1_g000001 Rmu_co8369943.1_g000001 Rmu_sc0000354.1_g000009 Rmu_sc0000354.1_g000012 Rmu_sc0001772.1_g000035
rosa_roxburghii	Rroxscaffold_3G00232110 Rroxscaffold_5G00374880 Rroxscaffold_5G00374910
rosa_rugosa	Rorug04G0257100 Rorug04G0268000
rosa_samantha	Rh4AG313300 Rh4AG322600 Rh4AG322700 Rh4BG320900 Rh4BG330100 Rh4BG330200 Rh4CG336100 Rh4CG345500 Rh4CG345600 Rh4CG345800 Rh4DG316400 Rh4DG316500 Rh4DG326800 Rh4DG326900 Rh7AG394400
rosa_wichuraiana	Rw0G000490 Rw0G023850 Rw4G027240 Rw4G027920 Rw4G027930 Rw7G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	425, 585
AclWI	GGATC	2 cut(s)	452, 545
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	1 cut(s)	615
AcvI	CACGTG	1 cut(s)	251
AfaI	GTAC	4 cut(s)	442, 491, 540, 575
AfiI	CCNNNNNNNGG	2 cut(s)	364, 560
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	1 cut(s)	527
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	2 cut(s)	388, 591
AluI	AGCT	2 cut(s)	388, 591
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	452, 545
AoxI	GGCC	3 cut(s)	199, 582, 625
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	615
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	54
AsuNHI	GCTAGC	2 cut(s)	388, 587
AvaII	GGWCC	1 cut(s)	367
BaeGI	GKGCMC	2 cut(s)	137, 404
BbrPI	CACGTG	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	2 cut(s)	170, 216
BciT130I	CCWGG	1 cut(s)	119
BciVI	GTATCC	1 cut(s)	157
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	3 cut(s)	194, 389, 588
BfmI	CTRYAG	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	157
BisI	GCNGC	2 cut(s)	174, 585
BlpI	GCTNAGC	1 cut(s)	42
BlsI	GCNGC	2 cut(s)	175, 586
BmcAI	AGTACT	2 cut(s)	491, 540
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	1 cut(s)	119
BmtI	GCTAGC	2 cut(s)	392, 591
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	113, 606
BsaAI	YACGTR	2 cut(s)	251, 440
BsaJI	CCNNGG	2 cut(s)	117, 363
BsaWI	WCCGGW	1 cut(s)	560
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 560
Bse118I	RCCGGY	2 cut(s)	197, 224
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	117, 363
BseLI	CCNNNNNNNGG	2 cut(s)	364, 560
BseMII	CTCAG	2 cut(s)	33, 97
BseSI	GKGCMC	2 cut(s)	137, 404
BseXI	GCAGC	1 cut(s)	160
BseYI	CCCAGC	2 cut(s)	220, 403
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	3 cut(s)	201, 584, 627
BsiEI	CGRYCG	1 cut(s)	229
BsiSI	CCGG	4 cut(s)	198, 225, 393, 561
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	364, 560
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	3 cut(s)	201, 584, 627
Bsp1286I	GDGCHC	2 cut(s)	137, 404
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	5 cut(s)	15, 108, 457, 550, 631
Bsp1720I	GCTNAGC	1 cut(s)	42
BspACI	CCGC	2 cut(s)	425, 585
BspANI	GGCC	3 cut(s)	201, 584, 627
BspCNI	CTCAG	2 cut(s)	34, 96
BspLI	GGNNCC	1 cut(s)	369
BspOI	GCTAGC	2 cut(s)	392, 591
BspPI	GGATC	2 cut(s)	452, 545
BsrFI	RCCGGY	2 cut(s)	197, 224
BsrGI	TGTACA	1 cut(s)	573
BssAI	RCCGGY	2 cut(s)	197, 224
BssECI	CCNNGG	2 cut(s)	117, 363
BssMI	GATC	5 cut(s)	15, 108, 457, 550, 631
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	145, 455
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	573
BstBAI	YACGTR	2 cut(s)	251, 440
BstC8I	GCNNGC	5 cut(s)	199, 390, 432, 521, 589
BstDEI	CTNAG	2 cut(s)	42, 83
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	5 cut(s)	18, 111, 460, 553, 634
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	5 cut(s)	15, 108, 457, 550, 631
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 182, 431
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	2 cut(s)	316, 425
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	48
BstSLI	GKGCMC	2 cut(s)	137, 404
BstSNI	TACGTA	1 cut(s)	440
BstV1I	GCAGC	1 cut(s)	160
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	201, 584, 627
Cac8I	GCNNGC	5 cut(s)	199, 390, 432, 521, 589
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	2 cut(s)	197, 224
Cfr13I	GGNCC	1 cut(s)	367
Csp6I	GTAC	4 cut(s)	441, 490, 539, 574
CviAII	CATG	3 cut(s)	313, 422, 629
CviQI	GTAC	4 cut(s)	441, 490, 539, 574
DdeI	CTNAG	2 cut(s)	42, 83
DpnI	GATC	5 cut(s)	17, 110, 459, 552, 633
DpnII	GATC	5 cut(s)	15, 108, 457, 550, 631
EaeI	YGGCCR	1 cut(s)	582
Eco105I	TACGTA	1 cut(s)	440
Eco130I	CCWWGG	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	367
Eco72I	CACGTG	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	3 cut(s)	316, 425, 632
FaiI	YATR	9 cut(s)	50, 161, 308, 314, 347, 378, 423, 495, 630
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	3 cut(s)	312, 421, 628
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	2 cut(s)	174, 585
Fsp4HI	GCNGC	2 cut(s)	174, 585
FspBI	CTAG	3 cut(s)	194, 389, 588
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	2 cut(s)	174, 585
GsaI	CCCAGC	2 cut(s)	224, 407
HaeIII	GGCC	3 cut(s)	201, 584, 627
HapII	CCGG	4 cut(s)	198, 225, 393, 561
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	3 cut(s)	316, 425, 632
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HpaII	CCGG	4 cut(s)	198, 225, 393, 561
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	5 cut(s)	190, 271, 451, 499, 574
Hpy188I	TCNGA	4 cut(s)	86, 259, 532, 595
Hpy188III	TCNNGA	2 cut(s)	92, 179
Hpy8I	GTNNAC	5 cut(s)	190, 271, 451, 499, 574
HpyAV	CCTTC	1 cut(s)	369
HpyCH4III	ACNGT	2 cut(s)	145, 455
HpyCH4IV	ACGT	2 cut(s)	250, 439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 182, 431
HpyF3I	CTNAG	2 cut(s)	42, 83
HpySE526I	ACGT	2 cut(s)	250, 439
Hsp92II	CATG	3 cut(s)	316, 425, 632
HspAI	GCGC	1 cut(s)	153
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	5 cut(s)	15, 108, 457, 550, 631
LmnI	GCTCC	2 cut(s)	427, 563
Lsp1109I	GCAGC	1 cut(s)	160
MaeI	CTAG	3 cut(s)	194, 389, 588
MaeII	ACGT	2 cut(s)	250, 439
MaeIII	GTNAC	3 cut(s)	209, 233, 286
MalI	GATC	5 cut(s)	17, 110, 459, 552, 633
MboI	GATC	5 cut(s)	15, 108, 457, 550, 631
MboII	GAAGA	1 cut(s)	353
MfeI	CAATTG	2 cut(s)	70, 567
MhlI	GDGCHC	2 cut(s)	137, 404
MluCI	AATT	4 cut(s)	70, 567, 609, 615
MmeI	TCCRAC	1 cut(s)	485
MroNI	GCCGGC	1 cut(s)	197
MseI	TTAA	1 cut(s)	612
MspI	CCGG	4 cut(s)	198, 225, 393, 561
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	2 cut(s)	70, 567
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	173, 182, 431
NaeI	GCCGGC	1 cut(s)	199
NdeII	GATC	5 cut(s)	15, 108, 457, 550, 631
NgoMIV	GCCGGC	1 cut(s)	197
NheI	GCTAGC	2 cut(s)	388, 587
NlaIII	CATG	3 cut(s)	316, 425, 632
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	2 cut(s)	209, 233
NspI	RCATGY	2 cut(s)	316, 425
PciI	ACATGT	1 cut(s)	312
PdiI	GCCGGC	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	175, 586
PmaCI	CACGTG	1 cut(s)	251
PmlI	CACGTG	1 cut(s)	251
Ppu21I	YACGTR	2 cut(s)	251, 440
PscI	ACATGT	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	117
PspCI	CACGTG	1 cut(s)	251
PspFI	CCCAGC	2 cut(s)	220, 403
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	367
RsaI	GTAC	4 cut(s)	442, 491, 540, 575
RsaNI	GTAC	4 cut(s)	441, 490, 539, 574
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	2 cut(s)	174, 585
Sau3AI	GATC	5 cut(s)	15, 108, 457, 550, 631
Sau96I	GGNCC	1 cut(s)	367
ScaI	AGTACT	2 cut(s)	491, 540
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	137, 404
SfcI	CTRYAG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	367
SmlI	CTYRAG	2 cut(s)	92, 621
SmoI	CTYRAG	2 cut(s)	92, 621
SnaBI	TACGTA	1 cut(s)	440
Sse9I	AATT	4 cut(s)	70, 567, 609, 615
SsiI	CCGC	2 cut(s)	425, 585
SspMI	CTAG	3 cut(s)	194, 389, 588
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	145, 455
TaiI	ACGT	2 cut(s)	253, 442
TaqI	TCGA	2 cut(s)	14, 480
TasI	AATT	4 cut(s)	70, 567, 609, 615
TatI	WGTACW	3 cut(s)	489, 538, 573
TauI	GCSGC	1 cut(s)	587
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TseFI	GTSAC	2 cut(s)	209, 233
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	2 cut(s)	209, 233
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	1 cut(s)	615
XceI	RCATGY	2 cut(s)	316, 425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XspI	CTAG	3 cut(s)	194, 389, 588
ZrmI	AGTACT	2 cut(s)	491, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.