Rroxscaffold_5G00374880

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001761
Physical Location & Seq
Forward (+)
55814530 .. 55815987
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374880.1

Sequence Viewer

Length: 1062 bp
ATGGGCTTAGAGATGAGTCGTCGTCTAATTGCCGCAACTATCCTCACATTCACCTTGTTCACCATCATCATCCTTCCATCCGAGGCCCAGGAACCAGGCGAGGGACCGGTGAAAGTAGACGGAGGGCACGGCTTGCATGTCGGGTTTTACGCTAAGACTTGCCCGAATGTTGAGGACATTGTAGCTGATGTTGTAAAACGTGTTCAGCAGAATGATCCCAAACTTCCTCCTGCCCTTATCCGCCTCTTTTTCCATGATTGTTTTGTCAAGGGTTGTGATGCCTCAATCCTGTTGGACACCTCAGCATCTGGCAGCAACCTTGTAGAGAAAACATCAACAGCCAATGGTGAAACACTCAGAGGTCTTGAGGTCATTGATGAGATCAAGGCCGAGCTCGAGAAGCAATGCCCACAAACTGTATCATGCGCTGACATATTAGCATATGCTGCTCGGGAAGCCGTTGTACTTGCCGGCCTACCACGTCACAATGTCCCCGCCGGTCGCCGTGACAGTAGGACTTCACGTTCTGACGATGCCGATGAAAACCTCCCTACAGCAAGAACGCCTCTGAATGACCTAATACACATTTTCGCCAGGAGAAATTTCACAGTAGAAGAAATGGTAGTCTTGTCTGGTGCACACTCCATTGGCGAAGCACAATGTACGCAAGTTACAAACAGACTATACACGTTTAGCCCAGTTGTGCCCAGAGACCCTGCCCTAGACCCAGCCTTTGCTAATGAACTAGCAGGAAAGTGCCCAGCAGAGCAGCCTCCGGGGCAAGCATTACAATTTAAGGTGGACTTTGATACCACAACACCACTTCTCCTCGACAATAATTACTATTTGAACCTGCAGAAAGGGAGAGGCTTGCTTCAATCGGATCAGGTACTGGCTATTGATCCCGGCACCAGACCATTTGTGGACCAAATGGCTGCTAGCAATGAAGCTTGGACTAAACGATTTTTAAAGGCCATGATCAAGATGGGGAGAATAAATGTTCTCACCAAAACTGAAGGAGAGATAAGGACAAACTGTCGGGCGGTAAATCCTGCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

353

Amino Acids

38.56

Weight (kDa)

5.63

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 61 - 313 5.5e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 861
AccB1I GGYRCC 1 cut(s) 908
AccI GTMKAC 1 cut(s) 117
AciI CCGC 4 cut(s) 33, 241, 495, 1043
AclWI GGATC 3 cut(s) 209, 891, 896
AcsI RAATTY 1 cut(s) 601
AcuI CTGAAG 1 cut(s) 1035
AfaI GTAC 3 cut(s) 465, 664, 891
AfiI CCNNNNNNNGG 1 cut(s) 101
AflIII ACRYGT 2 cut(s) 199, 687
AgeI ACCGGT 1 cut(s) 106
AgsI TTSAA 2 cut(s) 850, 878
AhdI GACNNNNNGTC 1 cut(s) 1035
AjiI CACGTC 1 cut(s) 482
AjnI CCWGG 3 cut(s) 87, 94, 593
AloI GAACNNNNNNTCC 2 cut(s) 508, 540
AluBI AGCT 3 cut(s) 185, 394, 950
AluI AGCT 3 cut(s) 185, 394, 950
Alw21I GWGCWC 2 cut(s) 396, 640
Alw26I GTCTC 1 cut(s) 705
Alw44I GTGCAC 1 cut(s) 636
AlwI GGATC 3 cut(s) 209, 891, 896
AlwNI CAGNNNCTG 2 cut(s) 308, 892
Ama87I CYCGRG 2 cut(s) 395, 450
AoxI GGCC 4 cut(s) 84, 387, 472, 972
ApaLI GTGCAC 1 cut(s) 636
ApeKI GCWGC 4 cut(s) 312, 446, 769, 935
ApoI RAATTY 1 cut(s) 601
ArsI GACNNNNNNTTYG 2 cut(s) 716, 748
AsiGI ACCGGT 1 cut(s) 106
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 3 cut(s) 85, 104, 925
AsuC2I CCSGG 2 cut(s) 777, 906
AsuHPI GGTGA 5 cut(s) 43, 52, 121, 359, 997
AsuNHI GCTAGC 1 cut(s) 938
AvaI CYCGRG 2 cut(s) 395, 450
AvaII GGWCC 2 cut(s) 104, 925
BaeGI GKGCMC 4 cut(s) 129, 640, 708, 761
BanI GGYRCC 1 cut(s) 908
BanII GRGCYC 1 cut(s) 396
BarI GAAGNNNNNNTAC 2 cut(s) 447, 479
Bbv12I GWGCWC 2 cut(s) 396, 640
BbvCI CCTCAGC 1 cut(s) 301
BbvI GCAGC 4 cut(s) 324, 433, 781, 922
BccI CCATC 3 cut(s) 71, 85, 979
BceAI ACGGC 3 cut(s) 145, 443, 489
BciT130I CCWGG 3 cut(s) 89, 96, 595
BclI TGATCA 1 cut(s) 978
BcnI CCSGG 2 cut(s) 777, 906
BcoDI GTCTC 1 cut(s) 705
BfaI CTAG 3 cut(s) 722, 746, 939
BfmI CTRYAG 2 cut(s) 552, 854
BfuAI ACCTGC 1 cut(s) 861
BglI GCCNNNNNGGC 1 cut(s) 778
BisI GCNGC 5 cut(s) 33, 313, 447, 770, 936
BlsI GCNGC 5 cut(s) 34, 314, 448, 771, 937
Bme1390I CCNGG 5 cut(s) 89, 96, 595, 777, 906
Bme18I GGWCC 2 cut(s) 104, 925
BmeRI GACNNNNNGTC 1 cut(s) 1035
BmeT110I CYCGRG 2 cut(s) 395, 450
BmgBI CACGTC 1 cut(s) 482
BmgT120I GGNCC 3 cut(s) 85, 104, 925
BmiI GGNNCC 3 cut(s) 93, 105, 910
BmrFI CCNGG 5 cut(s) 89, 96, 595, 777, 906
BmrI ACTGGG 1 cut(s) 692
BmsI GCATC 3 cut(s) 268, 314, 523
BmtI GCTAGC 1 cut(s) 942
BmuI ACTGGG 1 cut(s) 692
Bpu10I CCTNAGC 1 cut(s) 301
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 2 cut(s) 777, 906
BsaI GGTCTC 1 cut(s) 705
BsaJI CCNNGG 3 cut(s) 81, 87, 776
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 810, 840
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse118I RCCGGY 3 cut(s) 106, 470, 497
Bse1I ACTGG 2 cut(s) 698, 897
Bse3DI GCAATG 2 cut(s) 410, 949
BseBI CCWGG 3 cut(s) 89, 96, 595
BseDI CCNNGG 3 cut(s) 81, 87, 776
BseGI GGATG 2 cut(s) 69, 77
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMI GCAATG 2 cut(s) 410, 949
BseMII CTCAG 2 cut(s) 315, 370
BseNI ACTGG 2 cut(s) 698, 897
BseRI GAGGAG 1 cut(s) 818
BseSI GKGCMC 4 cut(s) 129, 640, 708, 761
BseXI GCAGC 4 cut(s) 324, 433, 781, 922
BseYI CCCAGC 2 cut(s) 727, 760
Bsh1285I CGRYCG 1 cut(s) 502
BshFI GGCC 4 cut(s) 86, 389, 474, 974
BshNI GGYRCC 1 cut(s) 908
BshTI ACCGGT 1 cut(s) 106
BsiEI CGRYCG 1 cut(s) 502
BsiHKAI GWGCWC 2 cut(s) 396, 640
BsiHKCI CYCGRG 2 cut(s) 395, 450
BsiSI CCGG 5 cut(s) 107, 471, 498, 776, 906
BslFI GGGAC 2 cut(s) 117, 476
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 705
BsmFI GGGAC 2 cut(s) 117, 476
BsnI GGCC 4 cut(s) 86, 389, 474, 974
Bso31I GGTCTC 1 cut(s) 705
BsoBI CYCGRG 2 cut(s) 395, 450
Bsp1286I GDGCHC 5 cut(s) 129, 396, 640, 708, 761
Bsp143I GATC 5 cut(s) 214, 381, 883, 901, 978
BspACI CCGC 4 cut(s) 33, 241, 495, 1043
BspANI GGCC 4 cut(s) 86, 389, 474, 974
BspCNI CTCAG 2 cut(s) 314, 369
BspLI GGNNCC 3 cut(s) 93, 105, 910
BspMAI CTGCAG 1 cut(s) 858
BspMI ACCTGC 1 cut(s) 861
BspOI GCTAGC 1 cut(s) 942
BspPI GGATC 3 cut(s) 209, 891, 896
BspT107I GGYRCC 1 cut(s) 908
BspTNI GGTCTC 1 cut(s) 705
BsrDI GCAATG 2 cut(s) 410, 949
BsrFI RCCGGY 3 cut(s) 106, 470, 497
BsrI ACTGG 2 cut(s) 698, 897
BssAI RCCGGY 3 cut(s) 106, 470, 497
BssECI CCNNGG 3 cut(s) 81, 87, 776
BssMI GATC 5 cut(s) 214, 381, 883, 901, 978
Bst2UI CCWGG 3 cut(s) 89, 96, 595
Bst4CI ACNGT 4 cut(s) 418, 512, 610, 1037
BstAPI GCANNNNNTGC 2 cut(s) 133, 446
BstC8I GCNNGC 5 cut(s) 134, 472, 783, 872, 940
BstDEI CTNAG 4 cut(s) 7, 153, 301, 356
BstF5I GGATG 2 cut(s) 69, 77
BstHHI GCGC 1 cut(s) 428
BstKTI GATC 5 cut(s) 217, 384, 886, 904, 981
BstMAI GTCTC 1 cut(s) 705
BstMBI GATC 5 cut(s) 214, 381, 883, 901, 978
BstMCI CGRYCG 1 cut(s) 502
BstMWI GCNNNNNNNGC 5 cut(s) 133, 400, 446, 455, 778
BstNI CCWGG 3 cut(s) 89, 96, 595
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 5 cut(s) 87, 94, 593, 775, 904
BstSFI CTRYAG 2 cut(s) 552, 854
BstSLI GKGCMC 4 cut(s) 129, 640, 708, 761
BstV1I GCAGC 4 cut(s) 324, 433, 781, 922
BsuRI GGCC 4 cut(s) 86, 389, 474, 974
BtrI CACGTC 1 cut(s) 482
BtsCI GGATG 2 cut(s) 69, 77
BveI ACCTGC 1 cut(s) 861
Cac8I GCNNGC 5 cut(s) 134, 472, 783, 872, 940
CaiI CAGNNNCTG 2 cut(s) 308, 892
CfoI GCGC 1 cut(s) 428
Cfr10I RCCGGY 3 cut(s) 106, 470, 497
Cfr13I GGNCC 3 cut(s) 85, 104, 925
Csp6I GTAC 3 cut(s) 464, 663, 890
CspAI ACCGGT 1 cut(s) 106
CviAII CATG 4 cut(s) 137, 254, 423, 976
CviQI GTAC 3 cut(s) 464, 663, 890
DdeI CTNAG 4 cut(s) 7, 153, 301, 356
DpnI GATC 5 cut(s) 216, 383, 885, 903, 980
DpnII GATC 5 cut(s) 214, 381, 883, 901, 978
DraI TTTAAA 1 cut(s) 969
DriI GACNNNNNGTC 1 cut(s) 1035
Eam1105I GACNNNNNGTC 1 cut(s) 1035
EciI GGCGGA 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 705
Eco47I GGWCC 2 cut(s) 104, 925
Eco53kI GAGCTC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 1035
Eco88I CYCGRG 2 cut(s) 395, 450
EcoICRI GAGCTC 1 cut(s) 394
EcoRII CCWGG 3 cut(s) 87, 94, 593
EcoT38I GRGCYC 1 cut(s) 396
FaeI CATG 4 cut(s) 140, 257, 426, 979
FaiI YATR 8 cut(s) 138, 255, 424, 434, 442, 444, 685, 977
FalI AAGNNNNNCTT 2 cut(s) 788, 820
FaqI GGGAC 2 cut(s) 117, 476
FatI CATG 4 cut(s) 136, 253, 422, 975
FauI CCCGC 1 cut(s) 502
FauNDI CATATG 1 cut(s) 442
FbaI TGATCA 1 cut(s) 978
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 5 cut(s) 33, 313, 447, 770, 936
FokI GGATG 2 cut(s) 56, 64
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 5 cut(s) 33, 313, 447, 770, 936
FspBI CTAG 3 cut(s) 722, 746, 939
GlaI GCGC 1 cut(s) 427
GluI GCNGC 5 cut(s) 33, 313, 447, 770, 936
GsaI CCCAGC 2 cut(s) 731, 764
HaeIII GGCC 4 cut(s) 86, 389, 474, 974
HapII CCGG 5 cut(s) 107, 471, 498, 776, 906
HhaI GCGC 1 cut(s) 428
Hin1II CATG 4 cut(s) 140, 257, 426, 979
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HindIII AAGCTT 1 cut(s) 948
HinfI GANTC 1 cut(s) 16
HpaII CCGG 5 cut(s) 107, 471, 498, 776, 906
HphI GGTGA 5 cut(s) 43, 52, 121, 359, 997
Hpy166II GTNNAC 5 cut(s) 60, 118, 638, 802, 925
Hpy188I TCNGA 5 cut(s) 82, 359, 529, 570, 883
Hpy188III TCNNGA 4 cut(s) 365, 397, 452, 982
Hpy8I GTNNAC 5 cut(s) 60, 118, 638, 802, 925
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 83, 1010
HpyCH4III ACNGT 4 cut(s) 418, 512, 610, 1037
HpyCH4IV ACGT 4 cut(s) 199, 481, 523, 689
HpyCH4V TGCA 3 cut(s) 136, 638, 856
HpyF10VI GCNNNNNNNGC 5 cut(s) 133, 400, 446, 455, 778
HpyF3I CTNAG 4 cut(s) 7, 153, 301, 356
HpySE526I ACGT 4 cut(s) 199, 481, 523, 689
Hsp92II CATG 4 cut(s) 140, 257, 426, 979
HspAI GCGC 1 cut(s) 426
KroI GCCGGC 1 cut(s) 470
KroNI GCCGGC 1 cut(s) 472
Ksp22I TGATCA 1 cut(s) 978
Kzo9I GATC 5 cut(s) 214, 381, 883, 901, 978
Lsp1109I GCAGC 4 cut(s) 324, 433, 781, 922
LweI GCATC 3 cut(s) 268, 314, 523
MaeI CTAG 3 cut(s) 722, 746, 939
MaeII ACGT 4 cut(s) 199, 481, 523, 689
MaeIII GTNAC 3 cut(s) 482, 506, 670
MalI GATC 5 cut(s) 216, 383, 885, 903, 980
MboI GATC 5 cut(s) 214, 381, 883, 901, 978
MboII GAAGA 1 cut(s) 626
MhlI GDGCHC 5 cut(s) 129, 396, 640, 708, 761
MluCI AATT 4 cut(s) 27, 601, 791, 838
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 273
MroNI GCCGGC 1 cut(s) 470
MseI TTAA 2 cut(s) 795, 968
MspI CCGG 5 cut(s) 107, 471, 498, 776, 906
MspR9I CCNGG 5 cut(s) 89, 96, 595, 777, 906
MvaI CCWGG 3 cut(s) 89, 96, 595
MwoI GCNNNNNNNGC 5 cut(s) 133, 400, 446, 455, 778
NaeI GCCGGC 1 cut(s) 472
NciI CCSGG 2 cut(s) 777, 906
NdeI CATATG 1 cut(s) 442
NdeII GATC 5 cut(s) 214, 381, 883, 901, 978
NgoMIV GCCGGC 1 cut(s) 470
NheI GCTAGC 1 cut(s) 938
NlaIII CATG 4 cut(s) 140, 257, 426, 979
NlaIV GGNNCC 3 cut(s) 93, 105, 910
NmeAIII GCCGAG 1 cut(s) 415
NmuCI GTSAC 2 cut(s) 482, 506
NspI RCATGY 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 395
PdiI GCCGGC 1 cut(s) 472
PinAI ACCGGT 1 cut(s) 106
PkrI GCNGC 5 cut(s) 34, 314, 448, 771, 937
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp124BI GAGCTC 1 cut(s) 396
Psp6I CCWGG 3 cut(s) 87, 94, 593
PspFI CCCAGC 2 cut(s) 727, 760
PspGI CCWGG 3 cut(s) 87, 94, 593
PspN4I GGNNCC 3 cut(s) 93, 105, 910
PspPI GGNCC 3 cut(s) 85, 104, 925
PsrI GAACNNNNNNTAC 2 cut(s) 186, 218
PstI CTGCAG 1 cut(s) 858
PstNI CAGNNNCTG 2 cut(s) 308, 892
RsaI GTAC 3 cut(s) 465, 664, 891
RsaNI GTAC 3 cut(s) 464, 663, 890
SacI GAGCTC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 795, 968
SatI GCNGC 5 cut(s) 33, 313, 447, 770, 936
Sau3AI GATC 5 cut(s) 214, 381, 883, 901, 978
Sau96I GGNCC 3 cut(s) 85, 104, 925
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 5 cut(s) 89, 96, 595, 777, 906
SduI GDGCHC 5 cut(s) 129, 396, 640, 708, 761
SfaNI GCATC 3 cut(s) 268, 314, 523
SfcI CTRYAG 2 cut(s) 552, 854
Sfr274I CTCGAG 1 cut(s) 395
SinI GGWCC 2 cut(s) 104, 925
SlaI CTCGAG 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 365, 395
SmoI CTYRAG 2 cut(s) 365, 395
Sse9I AATT 4 cut(s) 27, 601, 791, 838
SsiI CCGC 4 cut(s) 33, 241, 495, 1043
SspMI CTAG 3 cut(s) 722, 746, 939
SstI GAGCTC 1 cut(s) 396
StyD4I CCNGG 5 cut(s) 87, 94, 593, 775, 904
TaaI ACNGT 4 cut(s) 418, 512, 610, 1037
TaiI ACGT 4 cut(s) 202, 484, 526, 692
TaqI TCGA 2 cut(s) 396, 831
TasI AATT 4 cut(s) 27, 601, 791, 838
TatI WGTACW 1 cut(s) 463
TauI GCSGC 1 cut(s) 35
Tru1I TTAA 2 cut(s) 795, 968
Tru9I TTAA 2 cut(s) 795, 968
TseFI GTSAC 2 cut(s) 482, 506
TseI GCWGC 4 cut(s) 312, 446, 769, 935
Tsp45I GTSAC 2 cut(s) 482, 506
TspDTI ATGAA 3 cut(s) 555, 756, 960
TspGWI ACGGA 1 cut(s) 135
VneI GTGCAC 1 cut(s) 636
VpaK11BI GGWCC 2 cut(s) 104, 925
XapI RAATTY 1 cut(s) 601
XceI RCATGY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 2 cut(s) 919, 982
XhoI CTCGAG 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 3 cut(s) 722, 746, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.