MD16G1098800.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0001761
Physical Location & Seq
Forward (+)
6894709 .. 6895929
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1098800.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGGGTAGTCGTTTAATTGCCGCGCCGGTTTTTGCCGTCACCTTGTGCTCCATGATCGTCGTTGCTTATTCGGCAGATGTGAACAACCCGGGGAACGGGTTGCATGTTGGATTTTACAATCGGAAATGTCCCAATTTGGAGAAAATTGTGATTGACGTTGTGGCCAAGGCTGTAGAGAAGGACCGAAAGCTTCCTGCTGCCCTCATTCGCCTCTTCTTCCACGATTGCTTTGTCAAGGGCTGTGATGCGTCACTTCTGCTGGATGTCACACCCTCTGGCGAGCCCGTAGAGATGCTATCACCGGCCAGCTTCGGGGTCCGAGGTTTAGAAGTCATTGATCAGATCAAGGCTAGGGTAGAAAAGGAGTGCCCGGGAACCGTCTCATGTGCCGACATTTTAGCTTTTGCCTCACGGGAAGCTGTGGCTCTGTCCGGTTTGCCTCGTTACGAAGTCCCTGCTGGACGCCGCGACAGCCGCACTTCCCGTGCCTCCGACGTCATACTTCCTTCTCCCACAACACCTCTGAAGGAGCTCATAGACTTCTTCTCCAGAAAAGGCTTGAGCCTTGAGGAAATGGTTGCCTTGTCTGGAGCGCACTCCATCGGCACCGTCCACTGCAGCTTCTTCGATTACAGGATGTACAATTTCGCACCAGGTAAGCCGAAAGACCCTTCACTAAACGAAGTGTTTGCGGCTCAGCTTGCTCAACAGTGCCCTGCACCCAACGCATTGCCCGCGGAGGAGGCTAAAAAGAGGGCTGTTGACTCAGACCCCACCACACCGCTCGTCCTGGACAATCACTACTACAAGAGCCTGATGCAGGGGAGAGGATTGATGGAGTCGGATCAGGTTTTGGTGATCGACCCTCGCACCAGAGGGGTGGTGGAGAAACTGGCTAGGTCTGATTCTTTTGCTCGGGCATTTGCAAACGCCATGATTAAGATGGGGAGAATCAATGTTCTCACTGAAGATCAAGGAGAGATACGGAAAAATTGTCGGAAATTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

337

Amino Acids

36.71

Weight (kDa)

8.32

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 52 - 300 8.4e-82 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 498
AccB1I GGYRCC 1 cut(s) 605
AccBSI CCGCTC 1 cut(s) 784
AccII CGCG 3 cut(s) 23, 468, 737
AciI CCGC 7 cut(s) 21, 466, 475, 692, 735, 737, 782
AclWI GGATC 1 cut(s) 852
AcoI YGGCCR 2 cut(s) 162, 303
AcsI RAATTY 1 cut(s) 1001
AcuI CTGAAG 2 cut(s) 545, 987
AcyI GRCGYC 2 cut(s) 463, 495
AdeI CACNNNGTG 1 cut(s) 45
AfaI GTAC 1 cut(s) 641
AfiI CCNNNNNNNGG 3 cut(s) 95, 312, 820
AjnI CCWGG 2 cut(s) 652, 789
AluBI AGCT 7 cut(s) 190, 309, 401, 419, 532, 621, 700
AluI AGCT 7 cut(s) 190, 309, 401, 419, 532, 621, 700
Alw21I GWGCWC 2 cut(s) 50, 534
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 1 cut(s) 852
Ama87I CYCGRG 3 cut(s) 88, 370, 915
AoxI GGCC 2 cut(s) 162, 303
ApeKI GCWGC 2 cut(s) 197, 618
ApoI RAATTY 1 cut(s) 1001
AspLEI GCGC 2 cut(s) 25, 595
AspS9I GGNCC 2 cut(s) 181, 316
AsuC2I CCSGG 4 cut(s) 89, 90, 371, 372
AsuHPI GGTGA 3 cut(s) 31, 291, 868
AvaI CYCGRG 3 cut(s) 88, 370, 915
AvaII GGWCC 2 cut(s) 181, 316
BaeGI GKGCMC 2 cut(s) 371, 716
BalI TGGCCA 1 cut(s) 164
BanI GGYRCC 1 cut(s) 605
BanII GRGCYC 2 cut(s) 285, 534
Bbv12I GWGCWC 2 cut(s) 50, 534
BbvI GCAGC 2 cut(s) 184, 630
BccI CCATC 3 cut(s) 608, 829, 937
BceAI ACGGC 1 cut(s) 20
BcgI CGANNNNNNTGC 6 cut(s) 437, 471, 607, 641, 671, 705
BciT130I CCWGG 2 cut(s) 654, 791
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 4 cut(s) 89, 90, 371, 372
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 2 cut(s) 351, 897
BfmI CTRYAG 2 cut(s) 171, 616
BisI GCNGC 6 cut(s) 21, 198, 466, 475, 619, 693
BlpI GCTNAGC 1 cut(s) 696
BlsI GCNGC 6 cut(s) 22, 199, 467, 476, 620, 694
Bme1390I CCNGG 6 cut(s) 89, 90, 371, 372, 654, 791
Bme18I GGWCC 2 cut(s) 181, 316
BmeT110I CYCGRG 3 cut(s) 88, 370, 915
BmgT120I GGNCC 2 cut(s) 181, 316
BmiI GGNNCC 3 cut(s) 317, 376, 607
BmrFI CCNGG 6 cut(s) 89, 90, 371, 372, 654, 791
BmsI GCATC 3 cut(s) 235, 282, 807
BpmI CTGGAG 2 cut(s) 532, 609
Bpu1102I GCTNAGC 1 cut(s) 696
BpuEI CTTGAG 2 cut(s) 580, 587
BpuMI CCSGG 4 cut(s) 89, 90, 371, 372
BsaHI GRCGYC 2 cut(s) 463, 495
BsaJI CCNNGG 6 cut(s) 88, 89, 165, 319, 370, 735
BsaWI WCCGGW 1 cut(s) 431
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 312, 820
Bse118I RCCGGY 2 cut(s) 25, 301
Bse1I ACTGG 1 cut(s) 897
Bse3DI GCAATG 1 cut(s) 728
BseBI CCWGG 2 cut(s) 654, 791
BseDI CCNNGG 6 cut(s) 88, 89, 165, 319, 370, 735
BseGI GGATG 2 cut(s) 268, 642
BseLI CCNNNNNNNGG 3 cut(s) 95, 312, 820
BseMI GCAATG 1 cut(s) 728
BseMII CTCAG 2 cut(s) 710, 780
BseNI ACTGG 1 cut(s) 897
BseRI GAGGAG 1 cut(s) 755
BseSI GKGCMC 2 cut(s) 371, 716
BseXI GCAGC 2 cut(s) 184, 630
BsgI GTGCAG 1 cut(s) 702
Bsh1236I CGCG 3 cut(s) 23, 468, 737
BshFI GGCC 2 cut(s) 164, 305
BshNI GGYRCC 1 cut(s) 605
BsiHKAI GWGCWC 2 cut(s) 50, 534
BsiHKCI CYCGRG 3 cut(s) 88, 370, 915
BsiSI CCGG 5 cut(s) 26, 89, 302, 371, 432
BslFI GGGAC 2 cut(s) 114, 437
BslI CCNNNNNNNGG 3 cut(s) 95, 312, 820
BsmAI GTCTC 1 cut(s) 385
BsmBI CGTCTC 1 cut(s) 385
BsmFI GGGAC 2 cut(s) 114, 437
BsnI GGCC 2 cut(s) 164, 305
BsoBI CYCGRG 3 cut(s) 88, 370, 915
Bsp1286I GDGCHC 5 cut(s) 50, 285, 371, 534, 716
Bsp1407I TGTACA 1 cut(s) 639
Bsp143I GATC 6 cut(s) 54, 337, 342, 844, 858, 970
Bsp1720I GCTNAGC 1 cut(s) 696
BspACI CCGC 7 cut(s) 21, 466, 475, 692, 735, 737, 782
BspANI GGCC 2 cut(s) 164, 305
BspCNI CTCAG 2 cut(s) 709, 779
BspFNI CGCG 3 cut(s) 23, 468, 737
BspLI GGNNCC 3 cut(s) 317, 376, 607
BspMAI CTGCAG 1 cut(s) 620
BspPI GGATC 1 cut(s) 852
BspT107I GGYRCC 1 cut(s) 605
BsrBI CCGCTC 1 cut(s) 784
BsrDI GCAATG 1 cut(s) 728
BsrFI RCCGGY 2 cut(s) 25, 301
BsrGI TGTACA 1 cut(s) 639
BsrI ACTGG 1 cut(s) 897
BssAI RCCGGY 2 cut(s) 25, 301
BssECI CCNNGG 6 cut(s) 88, 89, 165, 319, 370, 735
BssMI GATC 6 cut(s) 54, 337, 342, 844, 858, 970
BssNI GRCGYC 2 cut(s) 463, 495
BssT1I CCWWGG 1 cut(s) 165
Bst2UI CCWGG 2 cut(s) 654, 791
Bst4CI ACNGT 3 cut(s) 379, 610, 711
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 2 cut(s) 463, 495
BstAUI TGTACA 1 cut(s) 639
BstC8I GCNNGC 4 cut(s) 281, 307, 702, 735
BstDEI CTNAG 2 cut(s) 696, 766
BstDSI CCRYGG 1 cut(s) 735
BstENI CCTNNNNNAGG 1 cut(s) 818
BstF5I GGATG 2 cut(s) 268, 642
BstFNI CGCG 3 cut(s) 23, 468, 737
BstHHI GCGC 2 cut(s) 25, 595
BstKTI GATC 6 cut(s) 57, 340, 345, 847, 861, 973
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 6 cut(s) 54, 337, 342, 844, 858, 970
BstMWI GCNNNNNNNGC 7 cut(s) 71, 471, 474, 701, 725, 734, 743
BstNI CCWGG 2 cut(s) 654, 791
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 6 cut(s) 87, 88, 369, 370, 652, 789
BstSFI CTRYAG 2 cut(s) 171, 616
BstSLI GKGCMC 2 cut(s) 371, 716
BstUI CGCG 3 cut(s) 23, 468, 737
BstV1I GCAGC 2 cut(s) 184, 630
BstXI CCANNNNNNTGG 1 cut(s) 880
BsuRI GGCC 2 cut(s) 164, 305
BtgI CCRYGG 1 cut(s) 735
BtsCI GGATG 2 cut(s) 268, 642
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 3 cut(s) 613, 716, 963
Cac8I GCNNGC 4 cut(s) 281, 307, 702, 735
CfoI GCGC 2 cut(s) 25, 595
Cfr10I RCCGGY 2 cut(s) 25, 301
Cfr13I GGNCC 2 cut(s) 181, 316
Cfr42I CCGCGG 1 cut(s) 738
Cfr9I CCCGGG 2 cut(s) 88, 370
CseI GACGC 2 cut(s) 237, 471
CsiI ACCWGGT 1 cut(s) 652
Csp6I GTAC 1 cut(s) 640
CviAII CATG 4 cut(s) 52, 104, 384, 934
CviQI GTAC 1 cut(s) 640
DdeI CTNAG 2 cut(s) 696, 766
DpnI GATC 6 cut(s) 56, 339, 344, 846, 860, 972
DpnII GATC 6 cut(s) 54, 337, 342, 844, 858, 970
DraIII CACNNNGTG 1 cut(s) 45
EaeI YGGCCR 2 cut(s) 162, 303
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 2 cut(s) 285, 534
Eco47I GGWCC 2 cut(s) 181, 316
Eco53kI GAGCTC 1 cut(s) 532
Eco57I CTGAAG 2 cut(s) 545, 987
Eco88I CYCGRG 3 cut(s) 88, 370, 915
EcoICRI GAGCTC 1 cut(s) 532
EcoNI CCTNNNNNAGG 1 cut(s) 818
EcoRII CCWGG 2 cut(s) 652, 789
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 2 cut(s) 285, 534
ErhI CCWWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 385
FaeI CATG 4 cut(s) 55, 107, 387, 937
FaiI YATR 6 cut(s) 53, 105, 385, 500, 536, 935
FaqI GGGAC 2 cut(s) 114, 437
FatI CATG 4 cut(s) 51, 103, 383, 933
FauI CCCGC 1 cut(s) 742
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 6 cut(s) 21, 198, 466, 475, 619, 693
FokI GGATG 2 cut(s) 275, 649
FriOI GRGCYC 2 cut(s) 285, 534
Fsp4HI GCNGC 6 cut(s) 21, 198, 466, 475, 619, 693
FspBI CTAG 2 cut(s) 351, 897
GlaI GCGC 2 cut(s) 24, 594
GluI GCNGC 6 cut(s) 21, 198, 466, 475, 619, 693
GsuI CTGGAG 2 cut(s) 532, 609
HaeIII GGCC 2 cut(s) 164, 305
HapII CCGG 5 cut(s) 26, 89, 302, 371, 432
HgaI GACGC 2 cut(s) 237, 471
HhaI GCGC 2 cut(s) 25, 595
Hin1I GRCGYC 2 cut(s) 463, 495
Hin1II CATG 4 cut(s) 55, 107, 387, 937
Hin6I GCGC 2 cut(s) 23, 593
HinP1I GCGC 2 cut(s) 23, 593
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 4 cut(s) 764, 839, 905, 951
HpaII CCGG 5 cut(s) 26, 89, 302, 371, 432
HphI GGTGA 3 cut(s) 31, 291, 868
Hpy166II GTNNAC 3 cut(s) 82, 613, 763
Hpy188I TCNGA 9 cut(s) 123, 320, 342, 493, 525, 769, 844, 904, 999
Hpy188III TCNNGA 2 cut(s) 549, 588
Hpy8I GTNNAC 3 cut(s) 82, 613, 763
Hpy99I CGWCG 2 cut(s) 62, 497
HpyAV CCTTC 4 cut(s) 172, 516, 520, 681
HpyCH4III ACNGT 3 cut(s) 379, 610, 711
HpyCH4IV ACGT 2 cut(s) 156, 495
HpyCH4V TGCA 5 cut(s) 103, 618, 719, 820, 926
HpyF10VI GCNNNNNNNGC 7 cut(s) 71, 471, 474, 701, 725, 734, 743
HpyF3I CTNAG 2 cut(s) 696, 766
HpySE526I ACGT 2 cut(s) 156, 495
Hsp92I GRCGYC 2 cut(s) 463, 495
Hsp92II CATG 4 cut(s) 55, 107, 387, 937
HspAI GCGC 2 cut(s) 23, 593
Ksp22I TGATCA 1 cut(s) 337
KspI CCGCGG 1 cut(s) 738
Kzo9I GATC 6 cut(s) 54, 337, 342, 844, 858, 970
LmnI GCTCC 3 cut(s) 53, 529, 590
Lsp1109I GCAGC 2 cut(s) 184, 630
LweI GCATC 3 cut(s) 235, 282, 807
MabI ACCWGGT 1 cut(s) 652
MaeI CTAG 2 cut(s) 351, 897
MaeII ACGT 2 cut(s) 156, 495
MaeIII GTNAC 4 cut(s) 37, 249, 265, 443
MalI GATC 6 cut(s) 56, 339, 344, 846, 860, 972
MbiI CCGCTC 1 cut(s) 784
MboI GATC 6 cut(s) 54, 337, 342, 844, 858, 970
MboII GAAGA 5 cut(s) 205, 208, 535, 616, 980
MhlI GDGCHC 5 cut(s) 50, 285, 371, 534, 716
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 6 cut(s) 15, 133, 144, 643, 991, 1001
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 2 cut(s) 758, 848
MmeI TCCRAC 4 cut(s) 88, 516, 822, 977
Mox20I TGGCCA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 164
MseI TTAA 2 cut(s) 14, 939
Msp20I TGGCCA 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 737
MspI CCGG 5 cut(s) 26, 89, 302, 371, 432
MspR9I CCNGG 6 cut(s) 89, 90, 371, 372, 654, 791
MvaI CCWGG 2 cut(s) 654, 791
MvnI CGCG 3 cut(s) 23, 468, 737
MwoI GCNNNNNNNGC 7 cut(s) 71, 471, 474, 701, 725, 734, 743
NciI CCSGG 4 cut(s) 89, 90, 371, 372
NdeII GATC 6 cut(s) 54, 337, 342, 844, 858, 970
NlaIII CATG 4 cut(s) 55, 107, 387, 937
NlaIV GGNNCC 3 cut(s) 317, 376, 607
NmuCI GTSAC 3 cut(s) 37, 249, 265
NspI RCATGY 1 cut(s) 107
PfeI GAWTC 2 cut(s) 905, 951
PfoI TCCNGGA 1 cut(s) 789
PkrI GCNGC 6 cut(s) 22, 199, 467, 476, 620, 694
PleI GAGTC 2 cut(s) 758, 847
PpsI GAGTC 2 cut(s) 758, 847
Psp124BI GAGCTC 1 cut(s) 534
Psp6I CCWGG 2 cut(s) 652, 789
PspGI CCWGG 2 cut(s) 652, 789
PspN4I GGNNCC 3 cut(s) 317, 376, 607
PspPI GGNCC 2 cut(s) 181, 316
PstI CTGCAG 1 cut(s) 620
RsaI GTAC 1 cut(s) 641
RsaNI GTAC 1 cut(s) 640
SacI GAGCTC 1 cut(s) 534
SacII CCGCGG 1 cut(s) 738
SaqAI TTAA 2 cut(s) 14, 939
SatI GCNGC 6 cut(s) 21, 198, 466, 475, 619, 693
Sau3AI GATC 6 cut(s) 54, 337, 342, 844, 858, 970
Sau96I GGNCC 2 cut(s) 181, 316
SchI GAGTC 2 cut(s) 758, 848
ScrFI CCNGG 6 cut(s) 89, 90, 371, 372, 654, 791
SduI GDGCHC 5 cut(s) 50, 285, 371, 534, 716
SexAI ACCWGGT 1 cut(s) 652
SfaNI GCATC 3 cut(s) 235, 282, 807
SfcI CTRYAG 2 cut(s) 171, 616
Sfr303I CCGCGG 1 cut(s) 738
SgrBI CCGCGG 1 cut(s) 738
SinI GGWCC 2 cut(s) 181, 316
SmaI CCCGGG 2 cut(s) 90, 372
SmlI CTYRAG 2 cut(s) 559, 566
SmoI CTYRAG 2 cut(s) 559, 566
Sse9I AATT 6 cut(s) 15, 133, 144, 643, 991, 1001
SsiI CCGC 7 cut(s) 21, 466, 475, 692, 735, 737, 782
SspMI CTAG 2 cut(s) 351, 897
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 6 cut(s) 87, 88, 369, 370, 652, 789
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 3 cut(s) 379, 610, 711
TaiI ACGT 2 cut(s) 159, 498
TaqI TCGA 2 cut(s) 627, 861
TaqII GACCGA 1 cut(s) 198
TasI AATT 6 cut(s) 15, 133, 144, 643, 991, 1001
TatI WGTACW 1 cut(s) 639
TauI GCSGC 4 cut(s) 23, 468, 477, 695
TfiI GAWTC 2 cut(s) 905, 951
Tru1I TTAA 2 cut(s) 14, 939
Tru9I TTAA 2 cut(s) 14, 939
TscAI CASTG 3 cut(s) 620, 716, 970
TseFI GTSAC 3 cut(s) 37, 249, 265
TseI GCWGC 2 cut(s) 197, 618
Tsp45I GTSAC 3 cut(s) 37, 249, 265
TspGWI ACGGA 1 cut(s) 1000
TspMI CCCGGG 2 cut(s) 88, 370
TspRI CASTG 3 cut(s) 620, 716, 970
VpaK11BI GGWCC 2 cut(s) 181, 316
XagI CCTNNNNNAGG 1 cut(s) 818
XapI RAATTY 1 cut(s) 1001
XceI RCATGY 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 2 cut(s) 880, 940
XmaI CCCGGG 2 cut(s) 88, 370
XspI CTAG 2 cut(s) 351, 897
ZraI GACGTC 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.