Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001761

Physical Location & Seq

Genomic Coordinates Forward (+)

17696104 .. 17701088

Gene Structure 4985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGTGGTCGTCTAATTGCCGCAACTATCCTCACCTTCACCTTGTTCACCATCATCATCCTTCCCTCCGAGGATAAGGGAGAAGGCAAAGGGAACGGCTTACATGTTGGGTTTTACGCTTCGAGTTGCCCCAAGGTTGAGGACATTGTTGCTGAGGAAATTGAAGCAAATGAGAAACATAGATACCAGCTCCAACTTGAGAAGGTCATTAGTAACAATGGCAACAAAACTATGAAAGTCTTGGCTTACAAGGTATGTGCAATTGTGCAATTGCAGATGGGTTGTGATGCCTCGATCCTGTTGGACGCGACACCATCTGGTGATCCTATAGAGAAAACATCACTAGCCAATAGTGAAACACAAAGAGGTCTTGATGTTATTGATGAGATCAAGGCCCAGGTAGAGCAGGAGTGCCCCCAAACTGTTTCCTGCGCTGACAAATTAGCATTTGCTGCTCGAGAAGCCGTTTACCTAGCCGGCCTACCCCGTCACAATGTCCCAACCGGTCGCCGTGACAGTAGGACTTCACGTGCTTCTGATGTCAATTTCAACGTCCCTACACCTGTAACGCCTCTGAAAGACATTACAGACATACTATACAAATATAGCAAAGCTCAGCCCCGAGACCCTTCCCTGGACCCAACCTATGCTGATGAGCTAGGCGGAAAGTGCTCAGCACTAGACACATTGCCTGCAGAGCAAGCATTACGTATAATGGTGGACTTTGATCCAACAACACCACTTGACATTGACAATCAGTACTATGTGAACCTGATGAGAGGGAGAGGCTTGCTTCAATCGGATCAAGTACTGACTACTGATCCCCAAACTGGAGCAATTATGTTCAGAATGGTTGATTGCTCTGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

290

Amino Acids

31.75

Weight (kDa)

4.84

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	80 - 198	7.7e-29	Peroxidase
peroxidase	PF00141	207 - 283	5.3e-14	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001761)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25120 FvH4_4g25140
malus_domestica	MD13G1097600.v1.1 MD13G1097700.v1.1 MD16G1098700.v1.1 MD16G1098800.v1.1
prunus_persica	Prupe.1G247700_v2.0.a1 Prupe.1G247800_v2.0.a1
pyrus_communis	pycom13g08540
rosa_chinensis	RchiOBHm_Chr4g0432321 RchiOBHm_Chr4g0432331 RchiOBHm_Chr4g0433321 RchiOBHm_Chr4g0433341
rosa_laevigata	RLG00000001640 RLG00000006762 RLG00000006763 RLG00000006853
rosa_multiflora	Rmu_co8257897.1_g000001 Rmu_co8369943.1_g000001 Rmu_sc0000354.1_g000009 Rmu_sc0000354.1_g000012 Rmu_sc0001772.1_g000035
rosa_roxburghii	Rroxscaffold_3G00232110 Rroxscaffold_5G00374880 Rroxscaffold_5G00374910
rosa_rugosa	Rorug04G0257100 Rorug04G0268000
rosa_samantha	Rh4AG313300 Rh4AG322600 Rh4AG322700 Rh4BG320900 Rh4BG330100 Rh4BG330200 Rh4CG336100 Rh4CG345500 Rh4CG345600 Rh4CG345800 Rh4DG316400 Rh4DG316500 Rh4DG326800 Rh4DG326900 Rh7AG394400
rosa_wichuraiana	Rw0G000490 Rw0G023850 Rw4G027240 Rw4G027920 Rw4G027930 Rw7G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	308
AciI	CCGC	2 cut(s)	21, 663
AclWI	GGATC	5 cut(s)	289, 317, 722, 810, 815
AcvI	CACGTG	1 cut(s)	530
AfaI	GTAC	2 cut(s)	761, 810
AfiI	CCNNNNNNNGG	2 cut(s)	634, 830
AflIII	ACRYGT	1 cut(s)	103
AgeI	ACCGGT	1 cut(s)	503
AgsI	TTSAA	3 cut(s)	164, 550, 797
AjnI	CCWGG	2 cut(s)	396, 633
AluBI	AGCT	3 cut(s)	190, 614, 658
AluI	AGCT	3 cut(s)	190, 614, 658
Alw21I	GWGCWC	1 cut(s)	674
Alw26I	GTCTC	1 cut(s)	618
AlwI	GGATC	5 cut(s)	289, 317, 722, 810, 815
Ama87I	CYCGRG	2 cut(s)	456, 621
AoxI	GGCC	2 cut(s)	393, 478
ApeKI	GCWGC	1 cut(s)	452
AsiGI	ACCGGT	1 cut(s)	503
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	2 cut(s)	394, 637
AsuHPI	GGTGA	4 cut(s)	25, 31, 40, 332
AvaI	CYCGRG	2 cut(s)	456, 621
AvaII	GGWCC	1 cut(s)	637
BaeGI	GKGCMC	1 cut(s)	416
BbrPI	CACGTG	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	674
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	3 cut(s)	59, 271, 322
BceAI	ACGGC	3 cut(s)	112, 449, 495
BciT130I	CCWGG	2 cut(s)	398, 635
BcoDI	GTCTC	1 cut(s)	618
BfaI	CTAG	4 cut(s)	344, 473, 659, 680
BfmI	CTRYAG	2 cut(s)	327, 693
BisI	GCNGC	2 cut(s)	21, 453
BlpI	GCTNAGC	2 cut(s)	615, 673
BlsI	GCNGC	2 cut(s)	22, 454
BmcAI	AGTACT	2 cut(s)	761, 810
Bme1390I	CCNGG	2 cut(s)	398, 635
Bme18I	GGWCC	1 cut(s)	637
BmeT110I	CYCGRG	2 cut(s)	456, 621
BmgT120I	GGNCC	2 cut(s)	394, 637
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	2 cut(s)	398, 635
BmsI	GCATC	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	852
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu1102I	GCTNAGC	2 cut(s)	615, 673
BpuEI	CTTGAG	1 cut(s)	218
BsaAI	YACGTR	2 cut(s)	530, 710
BsaI	GGTCTC	1 cut(s)	618
BsaJI	CCNNGG	4 cut(s)	69, 132, 396, 633
BsaWI	WCCGGW	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	2 cut(s)	634, 830
Bse118I	RCCGGY	2 cut(s)	476, 503
Bse1I	ACTGG	1 cut(s)	835
Bse3DI	GCAATG	1 cut(s)	686
BseBI	CCWGG	2 cut(s)	398, 635
BseDI	CCNNGG	4 cut(s)	69, 132, 396, 633
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	634, 830
BseMI	GCAATG	1 cut(s)	686
BseMII	CTCAG	3 cut(s)	144, 629, 687
BseNI	ACTGG	1 cut(s)	835
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	439
Bsh1236I	CGCG	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	508
BshFI	GGCC	2 cut(s)	395, 480
BshTI	ACCGGT	1 cut(s)	503
BsiEI	CGRYCG	1 cut(s)	508
BsiHKAI	GWGCWC	1 cut(s)	674
BsiHKCI	CYCGRG	2 cut(s)	456, 621
BsiSI	CCGG	2 cut(s)	477, 504
BslFI	GGGAC	2 cut(s)	482, 539
BslI	CCNNNNNNNGG	2 cut(s)	634, 830
BsmAI	GTCTC	1 cut(s)	618
BsmFI	GGGAC	2 cut(s)	482, 539
BsnI	GGCC	2 cut(s)	395, 480
Bso31I	GGTCTC	1 cut(s)	618
BsoBI	CYCGRG	2 cut(s)	456, 621
Bsp1286I	GDGCHC	2 cut(s)	416, 674
Bsp143I	GATC	6 cut(s)	294, 322, 387, 727, 802, 820
Bsp1720I	GCTNAGC	2 cut(s)	615, 673
BspACI	CCGC	2 cut(s)	21, 663
BspANI	GGCC	2 cut(s)	395, 480
BspCNI	CTCAG	3 cut(s)	145, 628, 686
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	1 cut(s)	639
BspMAI	CTGCAG	1 cut(s)	697
BspPI	GGATC	5 cut(s)	289, 317, 722, 810, 815
BspTNI	GGTCTC	1 cut(s)	618
BsrDI	GCAATG	1 cut(s)	686
BsrFI	RCCGGY	2 cut(s)	476, 503
BsrI	ACTGG	1 cut(s)	835
BssAI	RCCGGY	2 cut(s)	476, 503
BssECI	CCNNGG	4 cut(s)	69, 132, 396, 633
BssMI	GATC	6 cut(s)	294, 322, 387, 727, 802, 820
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	398, 635
Bst4CI	ACNGT	2 cut(s)	424, 518
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstBAI	YACGTR	2 cut(s)	530, 710
BstC8I	GCNNGC	4 cut(s)	478, 693, 702, 791
BstDEI	CTNAG	3 cut(s)	153, 615, 673
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	6 cut(s)	297, 325, 390, 730, 805, 823
BstMAI	GTCTC	1 cut(s)	618
BstMBI	GATC	6 cut(s)	294, 322, 387, 727, 802, 820
BstMCI	CGRYCG	1 cut(s)	508
BstMWI	GCNNNNNNNGC	5 cut(s)	452, 461, 669, 697, 701
BstNI	CCWGG	2 cut(s)	398, 635
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	396, 633
BstSFI	CTRYAG	2 cut(s)	327, 693
BstSLI	GKGCMC	1 cut(s)	416
BstSNI	TACGTA	1 cut(s)	710
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	439
BsuRI	GGCC	2 cut(s)	395, 480
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	4 cut(s)	478, 693, 702, 791
CfoI	GCGC	1 cut(s)	434
Cfr10I	RCCGGY	2 cut(s)	476, 503
Cfr13I	GGNCC	2 cut(s)	394, 637
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	760, 809
CspAI	ACCGGT	1 cut(s)	503
CviAII	CATG	1 cut(s)	104
CviQI	GTAC	2 cut(s)	760, 809
DdeI	CTNAG	3 cut(s)	153, 615, 673
DpnI	GATC	6 cut(s)	296, 324, 389, 729, 804, 822
DpnII	GATC	6 cut(s)	294, 322, 387, 727, 802, 820
EciI	GGCGGA	1 cut(s)	678
Eco105I	TACGTA	1 cut(s)	710
Eco130I	CCWWGG	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	618
Eco47I	GGWCC	1 cut(s)	637
Eco72I	CACGTG	1 cut(s)	530
Eco88I	CYCGRG	2 cut(s)	456, 621
EcoRII	CCWGG	2 cut(s)	396, 633
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	1 cut(s)	107
FaqI	GGGAC	2 cut(s)	482, 539
FatI	CATG	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	21, 453
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	21, 453
FspBI	CTAG	4 cut(s)	344, 473, 659, 680
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	2 cut(s)	21, 453
GsuI	CTGGAG	1 cut(s)	852
HaeIII	GGCC	2 cut(s)	395, 480
HapII	CCGG	2 cut(s)	477, 504
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HpaII	CCGG	2 cut(s)	477, 504
HphI	GGTGA	4 cut(s)	25, 31, 40, 332
Hpy166II	GTNNAC	4 cut(s)	48, 469, 721, 769
Hpy188I	TCNGA	6 cut(s)	70, 538, 576, 802, 848, 865
Hpy188III	TCNNGA	2 cut(s)	371, 458
Hpy8I	GTNNAC	4 cut(s)	48, 469, 721, 769
HpyAV	CCTTC	5 cut(s)	46, 71, 77, 196, 639
HpyCH4III	ACNGT	2 cut(s)	424, 518
HpyCH4IV	ACGT	3 cut(s)	529, 552, 709
HpyCH4V	TGCA	4 cut(s)	260, 268, 274, 695
HpyF10VI	GCNNNNNNNGC	5 cut(s)	452, 461, 669, 697, 701
HpyF3I	CTNAG	3 cut(s)	153, 615, 673
HpySE526I	ACGT	3 cut(s)	529, 552, 709
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	432
KroI	GCCGGC	1 cut(s)	476
KroNI	GCCGGC	1 cut(s)	478
Kzo9I	GATC	6 cut(s)	294, 322, 387, 727, 802, 820
LmnI	GCTCC	2 cut(s)	195, 833
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	4 cut(s)	344, 473, 659, 680
MaeII	ACGT	3 cut(s)	529, 552, 709
MaeIII	GTNAC	4 cut(s)	212, 488, 512, 565
MalI	GATC	6 cut(s)	296, 324, 389, 729, 804, 822
MboI	GATC	6 cut(s)	294, 322, 387, 727, 802, 820
MfeI	CAATTG	2 cut(s)	261, 269
MhlI	GDGCHC	2 cut(s)	416, 674
MluCI	AATT	7 cut(s)	15, 159, 261, 269, 440, 544, 837
MmeI	TCCRAC	3 cut(s)	217, 282, 755
MroNI	GCCGGC	1 cut(s)	476
MspI	CCGG	2 cut(s)	477, 504
MspR9I	CCNGG	2 cut(s)	398, 635
MunI	CAATTG	2 cut(s)	261, 269
MvaI	CCWGG	2 cut(s)	398, 635
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	5 cut(s)	452, 461, 669, 697, 701
NaeI	GCCGGC	1 cut(s)	478
NdeII	GATC	6 cut(s)	294, 322, 387, 727, 802, 820
NgoMIV	GCCGGC	1 cut(s)	476
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	1 cut(s)	639
NmuCI	GTSAC	2 cut(s)	488, 512
NspI	RCATGY	1 cut(s)	107
PaeR7I	CTCGAG	1 cut(s)	456
PciI	ACATGT	1 cut(s)	103
PdiI	GCCGGC	1 cut(s)	478
PinAI	ACCGGT	1 cut(s)	503
PkrI	GCNGC	2 cut(s)	22, 454
PmaCI	CACGTG	1 cut(s)	530
PmlI	CACGTG	1 cut(s)	530
Ppu21I	YACGTR	2 cut(s)	530, 710
PscI	ACATGT	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	396, 633
PspCI	CACGTG	1 cut(s)	530
PspGI	CCWGG	2 cut(s)	396, 633
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	2 cut(s)	394, 637
PstI	CTGCAG	1 cut(s)	697
RsaI	GTAC	2 cut(s)	761, 810
RsaNI	GTAC	2 cut(s)	760, 809
SatI	GCNGC	2 cut(s)	21, 453
Sau3AI	GATC	6 cut(s)	294, 322, 387, 727, 802, 820
Sau96I	GGNCC	2 cut(s)	394, 637
ScaI	AGTACT	2 cut(s)	761, 810
ScrFI	CCNGG	2 cut(s)	398, 635
SduI	GDGCHC	2 cut(s)	416, 674
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	2 cut(s)	327, 693
Sfr274I	CTCGAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	637
SlaI	CTCGAG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	197, 456
SmoI	CTYRAG	2 cut(s)	197, 456
SnaBI	TACGTA	1 cut(s)	710
Sse9I	AATT	7 cut(s)	15, 159, 261, 269, 440, 544, 837
SsiI	CCGC	2 cut(s)	21, 663
SspMI	CTAG	4 cut(s)	344, 473, 659, 680
StyD4I	CCNGG	2 cut(s)	396, 633
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	424, 518
TaiI	ACGT	3 cut(s)	532, 555, 712
TaqI	TCGA	3 cut(s)	122, 293, 457
TasI	AATT	7 cut(s)	15, 159, 261, 269, 440, 544, 837
TatI	WGTACW	2 cut(s)	759, 808
TauI	GCSGC	1 cut(s)	23
TseFI	GTSAC	2 cut(s)	488, 512
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	2 cut(s)	488, 512
TspDTI	ATGAA	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	637
XceI	RCATGY	1 cut(s)	107
XhoI	CTCGAG	1 cut(s)	456
XspI	CTAG	4 cut(s)	344, 473, 659, 680
ZrmI	AGTACT	2 cut(s)	761, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.