Rh4DG326800

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001761
Physical Location & Seq
Forward (+)
55081741 .. 55083555
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG326800.1

Sequence Viewer

Length: 1050 bp
ATGAGTCGTCGTCTAATTGCCGCAACTATCCTCACATTCACCTTGTTCACCATCGTCATCCTTCCCTCCGCGGCCCAGGAACCAGGCGAGGGACCGGTGAAAGTAGACGGAGGGCACGGCTTGCATGTCGGGTTTTACGCTAAGAGTTGCCCGAATGTTGAGGACATTGTAGCTGATGTTGTAAAACGTGTTCAGCAGAATGATCCCAAGCTTCCTCCTGCCCTCATCCGCCTCTTTTTCCATGATTGTTTTGTCAAGGGTTGTGATGCCTCAATCCTGTTGGACACCACAGCATCTGGCAGCAACCTTGTAGAGAAAACATCAACAGCCAATGGTGAAACACTCAGAGGTCTTGAGGTCATTGATGAGATCAAGGCCGAGCTCGAGAAGCAATGCCCACTAACTGTATCCTGCGCTGACATATTAGCATATGCTGCTCGGGAAGCCGTTGTACTTGCCGGCCTACCACGTCACAATGTCCCCGCCGGTCGCCGTGACAGTAGGACTTCACGTTCTGACGATGCCGATGAAAACCTCCCTACAGCAAGAACGCCTCTGAATGACCTAATACACATTTTCGCCAGGAGAAATTTCACAGTAGAAGAAATGGTTGTCTTGTCCGGTGCACACTCCATTGGCGAAGCACAATGTAAGCAAGTTACAGACAGACTATACACGTTTAGCCCAGTTGTGCCCAGAGACCCTGCCCTAGACCCAGCCTTTGCTAATGAGCTAGCAGGAAAGTGCCCAGCAGAGCAGCCTCCGGGCCAAGCATTACAATTTAAGGTGGACTTTGATACCACAACACCACTTGTCCTCGACAATAATTACTATTTGAACCTGCAGAAAGGGAGAGGCTTGCTTCAATCGGATCAGGTACTGGCTATTGATCCCGGCACCAGACCATTTGTGGACCAAATGGCTGCTAGCAATGAAGCTTGGACTAAACGATTTTTAAAGGCCATGATCAAGATGGGGAGAGTAAATGTTCTCACCAAAACTGAAGGAGAGATAAGGACAAACTGTCGGGCGGTAAATCCTGCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

349

Amino Acids

38.05

Weight (kDa)

5.93

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 57 - 309 5.9e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 849
AccB1I GGYRCC 1 cut(s) 896
AccI GTMKAC 1 cut(s) 105
AccII CGCG 1 cut(s) 71
AciI CCGC 6 cut(s) 21, 69, 71, 229, 483, 1031
AclWI GGATC 3 cut(s) 197, 879, 884
AcsI RAATTY 1 cut(s) 589
AcuI CTGAAG 1 cut(s) 1023
AfaI GTAC 2 cut(s) 453, 879
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 2 cut(s) 187, 675
AgeI ACCGGT 1 cut(s) 94
AgsI TTSAA 2 cut(s) 838, 866
AhdI GACNNNNNGTC 1 cut(s) 1023
AjiI CACGTC 1 cut(s) 470
AjnI CCWGG 3 cut(s) 75, 82, 581
AloI GAACNNNNNNTCC 2 cut(s) 496, 528
AluBI AGCT 5 cut(s) 173, 211, 382, 733, 938
AluI AGCT 5 cut(s) 173, 211, 382, 733, 938
Alw21I GWGCWC 2 cut(s) 384, 628
Alw26I GTCTC 1 cut(s) 693
Alw44I GTGCAC 1 cut(s) 624
AlwI GGATC 3 cut(s) 197, 879, 884
AlwNI CAGNNNCTG 2 cut(s) 296, 880
Ama87I CYCGRG 2 cut(s) 383, 438
AoxI GGCC 5 cut(s) 72, 375, 460, 766, 960
ApaLI GTGCAC 1 cut(s) 624
ApeKI GCWGC 4 cut(s) 300, 434, 757, 923
ApoI RAATTY 1 cut(s) 589
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
AsiGI ACCGGT 1 cut(s) 94
AspLEI GCGC 1 cut(s) 416
AspS9I GGNCC 4 cut(s) 73, 92, 766, 913
AsuC2I CCSGG 2 cut(s) 765, 894
AsuHPI GGTGA 5 cut(s) 31, 40, 109, 347, 985
AsuNHI GCTAGC 2 cut(s) 733, 926
AvaI CYCGRG 2 cut(s) 383, 438
AvaII GGWCC 2 cut(s) 92, 913
BaeGI GKGCMC 4 cut(s) 117, 628, 696, 749
BanI GGYRCC 1 cut(s) 896
BanII GRGCYC 1 cut(s) 384
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
Bbv12I GWGCWC 2 cut(s) 384, 628
BbvI GCAGC 4 cut(s) 312, 421, 769, 910
BccI CCATC 2 cut(s) 59, 967
BceAI ACGGC 3 cut(s) 133, 431, 477
BciT130I CCWGG 3 cut(s) 77, 84, 583
BciVI GTATCC 1 cut(s) 418
BclI TGATCA 1 cut(s) 966
BcnI CCSGG 2 cut(s) 765, 894
BcoDI GTCTC 1 cut(s) 693
BfaI CTAG 3 cut(s) 710, 734, 927
BfmI CTRYAG 2 cut(s) 540, 842
BfuAI ACCTGC 1 cut(s) 849
BfuI GTATCC 1 cut(s) 418
BisI GCNGC 6 cut(s) 21, 72, 301, 435, 758, 924
BlsI GCNGC 6 cut(s) 22, 73, 302, 436, 759, 925
Bme1390I CCNGG 5 cut(s) 77, 84, 583, 765, 894
Bme18I GGWCC 2 cut(s) 92, 913
BmeRI GACNNNNNGTC 1 cut(s) 1023
BmeT110I CYCGRG 2 cut(s) 383, 438
BmgBI CACGTC 1 cut(s) 470
BmgT120I GGNCC 4 cut(s) 73, 92, 766, 913
BmiI GGNNCC 3 cut(s) 81, 93, 898
BmrFI CCNGG 5 cut(s) 77, 84, 583, 765, 894
BmrI ACTGGG 1 cut(s) 680
BmsI GCATC 3 cut(s) 256, 302, 511
BmtI GCTAGC 2 cut(s) 737, 930
BmuI ACTGGG 1 cut(s) 680
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 2 cut(s) 765, 894
BsaI GGTCTC 1 cut(s) 693
BsaJI CCNNGG 2 cut(s) 69, 75
BsaWI WCCGGW 2 cut(s) 94, 620
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 3 cut(s) 94, 458, 485
Bse1I ACTGG 2 cut(s) 686, 885
Bse3DI GCAATG 2 cut(s) 398, 937
BseBI CCWGG 3 cut(s) 77, 84, 583
BseDI CCNNGG 2 cut(s) 69, 75
BseGI GGATG 2 cut(s) 57, 225
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 2 cut(s) 398, 937
BseMII CTCAG 1 cut(s) 358
BseNI ACTGG 2 cut(s) 686, 885
BseSI GKGCMC 4 cut(s) 117, 628, 696, 749
BseXI GCAGC 4 cut(s) 312, 421, 769, 910
BseYI CCCAGC 2 cut(s) 715, 748
Bsh1236I CGCG 1 cut(s) 71
Bsh1285I CGRYCG 1 cut(s) 490
BshFI GGCC 5 cut(s) 74, 377, 462, 768, 962
BshNI GGYRCC 1 cut(s) 896
BshTI ACCGGT 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 490
BsiHKAI GWGCWC 2 cut(s) 384, 628
BsiHKCI CYCGRG 2 cut(s) 383, 438
BsiSI CCGG 6 cut(s) 95, 459, 486, 621, 764, 894
BslFI GGGAC 2 cut(s) 105, 464
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 693
BsmFI GGGAC 2 cut(s) 105, 464
BsnI GGCC 5 cut(s) 74, 377, 462, 768, 962
Bso31I GGTCTC 1 cut(s) 693
BsoBI CYCGRG 2 cut(s) 383, 438
Bsp1286I GDGCHC 5 cut(s) 117, 384, 628, 696, 749
Bsp143I GATC 5 cut(s) 202, 369, 871, 889, 966
BspACI CCGC 6 cut(s) 21, 69, 71, 229, 483, 1031
BspANI GGCC 5 cut(s) 74, 377, 462, 768, 962
BspCNI CTCAG 1 cut(s) 357
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 3 cut(s) 81, 93, 898
BspMAI CTGCAG 1 cut(s) 846
BspMI ACCTGC 1 cut(s) 849
BspOI GCTAGC 2 cut(s) 737, 930
BspPI GGATC 3 cut(s) 197, 879, 884
BspT107I GGYRCC 1 cut(s) 896
BspTNI GGTCTC 1 cut(s) 693
BsrDI GCAATG 2 cut(s) 398, 937
BsrFI RCCGGY 3 cut(s) 94, 458, 485
BsrI ACTGG 2 cut(s) 686, 885
BssAI RCCGGY 3 cut(s) 94, 458, 485
BssECI CCNNGG 2 cut(s) 69, 75
BssMI GATC 5 cut(s) 202, 369, 871, 889, 966
Bst2UI CCWGG 3 cut(s) 77, 84, 583
Bst4CI ACNGT 4 cut(s) 406, 500, 598, 1025
BstAPI GCANNNNNTGC 2 cut(s) 121, 434
BstC8I GCNNGC 5 cut(s) 122, 460, 735, 860, 928
BstDEI CTNAG 2 cut(s) 141, 344
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 2 cut(s) 57, 225
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 5 cut(s) 205, 372, 874, 892, 969
BstMAI GTCTC 1 cut(s) 693
BstMBI GATC 5 cut(s) 202, 369, 871, 889, 966
BstMCI CGRYCG 1 cut(s) 490
BstMWI GCNNNNNNNGC 4 cut(s) 121, 388, 434, 443
BstNI CCWGG 3 cut(s) 77, 84, 583
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 5 cut(s) 75, 82, 581, 763, 892
BstSFI CTRYAG 2 cut(s) 540, 842
BstSLI GKGCMC 4 cut(s) 117, 628, 696, 749
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 4 cut(s) 312, 421, 769, 910
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 5 cut(s) 74, 377, 462, 768, 962
BtgI CCRYGG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 470
BtsCI GGATG 2 cut(s) 57, 225
BveI ACCTGC 1 cut(s) 849
Cac8I GCNNGC 5 cut(s) 122, 460, 735, 860, 928
CaiI CAGNNNCTG 2 cut(s) 296, 880
CfoI GCGC 1 cut(s) 416
Cfr10I RCCGGY 3 cut(s) 94, 458, 485
Cfr13I GGNCC 4 cut(s) 73, 92, 766, 913
Cfr42I CCGCGG 1 cut(s) 72
Csp6I GTAC 2 cut(s) 452, 878
CspAI ACCGGT 1 cut(s) 94
CviAII CATG 3 cut(s) 125, 242, 964
CviQI GTAC 2 cut(s) 452, 878
DdeI CTNAG 2 cut(s) 141, 344
DpnI GATC 5 cut(s) 204, 371, 873, 891, 968
DpnII GATC 5 cut(s) 202, 369, 871, 889, 966
DraI TTTAAA 1 cut(s) 957
DriI GACNNNNNGTC 1 cut(s) 1023
Eam1105I GACNNNNNGTC 1 cut(s) 1023
EciI GGCGGA 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 382
Eco24I GRGCYC 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 693
Eco47I GGWCC 2 cut(s) 92, 913
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 1023
Eco88I CYCGRG 2 cut(s) 383, 438
EcoICRI GAGCTC 1 cut(s) 382
EcoRII CCWGG 3 cut(s) 75, 82, 581
EcoT38I GRGCYC 1 cut(s) 384
FaeI CATG 3 cut(s) 128, 245, 967
FaiI YATR 7 cut(s) 126, 243, 422, 430, 432, 673, 965
FalI AAGNNNNNCTT 2 cut(s) 776, 808
FaqI GGGAC 2 cut(s) 105, 464
FatI CATG 3 cut(s) 124, 241, 963
FauI CCCGC 1 cut(s) 490
FauNDI CATATG 1 cut(s) 430
FbaI TGATCA 1 cut(s) 966
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 6 cut(s) 21, 72, 301, 435, 758, 924
FokI GGATG 2 cut(s) 44, 212
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 6 cut(s) 21, 72, 301, 435, 758, 924
FspBI CTAG 3 cut(s) 710, 734, 927
GlaI GCGC 1 cut(s) 415
GluI GCNGC 6 cut(s) 21, 72, 301, 435, 758, 924
GsaI CCCAGC 2 cut(s) 719, 752
HaeIII GGCC 5 cut(s) 74, 377, 462, 768, 962
HapII CCGG 6 cut(s) 95, 459, 486, 621, 764, 894
HhaI GCGC 1 cut(s) 416
Hin1II CATG 3 cut(s) 128, 245, 967
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HindIII AAGCTT 2 cut(s) 209, 936
HinfI GANTC 1 cut(s) 4
HpaII CCGG 6 cut(s) 95, 459, 486, 621, 764, 894
HphI GGTGA 5 cut(s) 31, 40, 109, 347, 985
Hpy166II GTNNAC 5 cut(s) 48, 106, 626, 790, 913
Hpy188I TCNGA 4 cut(s) 347, 517, 558, 871
Hpy188III TCNNGA 4 cut(s) 353, 385, 440, 970
Hpy8I GTNNAC 5 cut(s) 48, 106, 626, 790, 913
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 71, 998
HpyCH4III ACNGT 4 cut(s) 406, 500, 598, 1025
HpyCH4IV ACGT 4 cut(s) 187, 469, 511, 677
HpyCH4V TGCA 3 cut(s) 124, 626, 844
HpyF10VI GCNNNNNNNGC 4 cut(s) 121, 388, 434, 443
HpyF3I CTNAG 2 cut(s) 141, 344
HpySE526I ACGT 4 cut(s) 187, 469, 511, 677
Hsp92II CATG 3 cut(s) 128, 245, 967
HspAI GCGC 1 cut(s) 414
KroI GCCGGC 1 cut(s) 458
KroNI GCCGGC 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 966
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 5 cut(s) 202, 369, 871, 889, 966
Lsp1109I GCAGC 4 cut(s) 312, 421, 769, 910
LweI GCATC 3 cut(s) 256, 302, 511
MaeI CTAG 3 cut(s) 710, 734, 927
MaeII ACGT 4 cut(s) 187, 469, 511, 677
MaeIII GTNAC 3 cut(s) 470, 494, 658
MalI GATC 5 cut(s) 204, 371, 873, 891, 968
MboI GATC 5 cut(s) 202, 369, 871, 889, 966
MboII GAAGA 1 cut(s) 614
MhlI GDGCHC 5 cut(s) 117, 384, 628, 696, 749
MluCI AATT 4 cut(s) 15, 589, 779, 826
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 261
MroNI GCCGGC 1 cut(s) 458
MseI TTAA 2 cut(s) 783, 956
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 6 cut(s) 95, 459, 486, 621, 764, 894
MspR9I CCNGG 5 cut(s) 77, 84, 583, 765, 894
MvaI CCWGG 3 cut(s) 77, 84, 583
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 4 cut(s) 121, 388, 434, 443
NaeI GCCGGC 1 cut(s) 460
NciI CCSGG 2 cut(s) 765, 894
NdeI CATATG 1 cut(s) 430
NdeII GATC 5 cut(s) 202, 369, 871, 889, 966
NgoMIV GCCGGC 1 cut(s) 458
NheI GCTAGC 2 cut(s) 733, 926
NlaIII CATG 3 cut(s) 128, 245, 967
NlaIV GGNNCC 3 cut(s) 81, 93, 898
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 2 cut(s) 470, 494
NspI RCATGY 1 cut(s) 128
PaeR7I CTCGAG 1 cut(s) 383
PdiI GCCGGC 1 cut(s) 460
PinAI ACCGGT 1 cut(s) 94
PkrI GCNGC 6 cut(s) 22, 73, 302, 436, 759, 925
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 384
Psp6I CCWGG 3 cut(s) 75, 82, 581
PspFI CCCAGC 2 cut(s) 715, 748
PspGI CCWGG 3 cut(s) 75, 82, 581
PspN4I GGNNCC 3 cut(s) 81, 93, 898
PspPI GGNCC 4 cut(s) 73, 92, 766, 913
PsrI GAACNNNNNNTAC 2 cut(s) 174, 206
PstI CTGCAG 1 cut(s) 846
PstNI CAGNNNCTG 2 cut(s) 296, 880
RsaI GTAC 2 cut(s) 453, 879
RsaNI GTAC 2 cut(s) 452, 878
SacI GAGCTC 1 cut(s) 384
SacII CCGCGG 1 cut(s) 72
SaqAI TTAA 2 cut(s) 783, 956
SatI GCNGC 6 cut(s) 21, 72, 301, 435, 758, 924
Sau3AI GATC 5 cut(s) 202, 369, 871, 889, 966
Sau96I GGNCC 4 cut(s) 73, 92, 766, 913
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 5 cut(s) 77, 84, 583, 765, 894
SduI GDGCHC 5 cut(s) 117, 384, 628, 696, 749
SfaNI GCATC 3 cut(s) 256, 302, 511
SfcI CTRYAG 2 cut(s) 540, 842
Sfr274I CTCGAG 1 cut(s) 383
Sfr303I CCGCGG 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 72
SinI GGWCC 2 cut(s) 92, 913
SlaI CTCGAG 1 cut(s) 383
SmlI CTYRAG 2 cut(s) 353, 383
SmoI CTYRAG 2 cut(s) 353, 383
Sse9I AATT 4 cut(s) 15, 589, 779, 826
SsiI CCGC 6 cut(s) 21, 69, 71, 229, 483, 1031
SspMI CTAG 3 cut(s) 710, 734, 927
SstI GAGCTC 1 cut(s) 384
StyD4I CCNGG 5 cut(s) 75, 82, 581, 763, 892
TaaI ACNGT 4 cut(s) 406, 500, 598, 1025
TaiI ACGT 4 cut(s) 190, 472, 514, 680
TaqI TCGA 2 cut(s) 384, 819
TasI AATT 4 cut(s) 15, 589, 779, 826
TatI WGTACW 1 cut(s) 451
TauI GCSGC 2 cut(s) 23, 74
Tru1I TTAA 2 cut(s) 783, 956
Tru9I TTAA 2 cut(s) 783, 956
TseFI GTSAC 2 cut(s) 470, 494
TseI GCWGC 4 cut(s) 300, 434, 757, 923
Tsp45I GTSAC 2 cut(s) 470, 494
TspDTI ATGAA 2 cut(s) 543, 948
TspGWI ACGGA 1 cut(s) 123
VneI GTGCAC 1 cut(s) 624
VpaK11BI GGWCC 2 cut(s) 92, 913
XapI RAATTY 1 cut(s) 589
XceI RCATGY 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 2 cut(s) 907, 970
XhoI CTCGAG 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 3 cut(s) 710, 734, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.