Rw7G032840

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001761
Physical Location & Seq
Reverse (-)
48093993 .. 48095260
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G032840.1

Sequence Viewer

Length: 918 bp
ATGGGTGGTCGTCTAATTGCCGCAACTATCCTCACCTTCACCTTGTTCACCATCATCATCCTTCCCTCCGAGGCTAAGGGAGAAGGCAAAGGGAACGGCTTACATGTTGGGTTTTACGCTTCGAGTTACCCCAAGGTTGAGGACATTGTTGCTGAGGTTCTCCCTCCTGCCCTCATTCGCCTCTTTTTCCATGACTGTTTTGTCAAGGGTTGTGATGCCTCGATCCTGTTGGACGCGACACCATCTGGTGATCCTATAGAGAAAACATCACCAGCCAATAGTGAAACACAAAGAGGTCTTGATGTTATTGATGAGATCAAGGCCCAGGTAGAGCAGGAGTGCCCCCAAACTGTTTCCTGCGCTGACAAATTAGCATTTGCTGCTCGAGAAGCCGTTTACCTAGCCGGCCTACCCCGTCACAATGTCCCAACCGGTCGCCGTGACAGTAGGACTTCACGTGCTTCTGATGTCAATTTCAACGTCCCTACACCTGTAACGCCTCTGAAAGACATTACAGACATGTTCGGCAGGAGAAATCCCACACTAGAAGATATGGTTGTCTCGTCCGACAGACTATACAAATATAGCAAAGCTCAGCCCCGAGACCCTTCCCTGGACCCAACCTATGCTGATGAGCTAGGCAGAAAGTGCTCAGCACTAGACACATTGCCTGCAGAGCAAGCATTACGTATAATGGTGGACTTTGATCCAACAACACCACTTGACCTTGACAATCAGTACTATGTGAACCTGATGAGAGGGAGAGGCTTGCTTCAATCGGATCAAGTACTGACTACTGATCCCCAAACAGGAGCAATTGTTAAAAAATTTCTCAAGGCCATGATCAAGATGGGAAGAATAAATGTTCTCACCAAAGATGAAGGAAAGATAAGGACAAACTACCGGAAGTATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

305

Amino Acids

33.7

Weight (kDa)

6.35

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 54 - 278 3.7e-61 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AccII CGCG 1 cut(s) 236
AciI CCGC 1 cut(s) 21
AclWI GGATC 5 cut(s) 217, 245, 701, 789, 794
AcsI RAATTY 1 cut(s) 827
AcvI CACGTG 1 cut(s) 458
AfaI GTAC 2 cut(s) 740, 789
AfiI CCNNNNNNNGG 2 cut(s) 613, 809
AflIII ACRYGT 2 cut(s) 103, 519
AgeI ACCGGT 1 cut(s) 431
AgsI TTSAA 2 cut(s) 478, 776
AjnI CCWGG 2 cut(s) 324, 612
AluBI AGCT 2 cut(s) 593, 637
AluI AGCT 2 cut(s) 593, 637
Alw21I GWGCWC 1 cut(s) 653
Alw26I GTCTC 2 cut(s) 565, 597
AlwI GGATC 5 cut(s) 217, 245, 701, 789, 794
Ama87I CYCGRG 2 cut(s) 384, 600
AoxI GGCC 3 cut(s) 321, 406, 837
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 1 cut(s) 827
AsiGI ACCGGT 1 cut(s) 431
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 322, 616
AsuHPI GGTGA 6 cut(s) 25, 31, 40, 260, 261, 862
AvaI CYCGRG 2 cut(s) 384, 600
AvaII GGWCC 1 cut(s) 616
BaeGI GKGCMC 1 cut(s) 344
BbrPI CACGTG 1 cut(s) 458
Bbv12I GWGCWC 1 cut(s) 653
BbvCI CCTCAGC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 367
BccI CCATC 3 cut(s) 59, 250, 844
BceAI ACGGC 3 cut(s) 112, 377, 423
BciT130I CCWGG 2 cut(s) 326, 614
BclI TGATCA 1 cut(s) 843
BcoDI GTCTC 2 cut(s) 565, 597
BfaI CTAG 4 cut(s) 401, 545, 638, 659
BfmI CTRYAG 2 cut(s) 255, 672
BisI GCNGC 2 cut(s) 21, 381
BlpI GCTNAGC 2 cut(s) 594, 652
BlsI GCNGC 2 cut(s) 22, 382
BmcAI AGTACT 2 cut(s) 740, 789
Bme1390I CCNGG 2 cut(s) 326, 614
Bme18I GGWCC 1 cut(s) 616
BmeT110I CYCGRG 2 cut(s) 384, 600
BmgT120I GGNCC 2 cut(s) 322, 616
BmiI GGNNCC 1 cut(s) 618
BmrFI CCNGG 2 cut(s) 326, 614
BmsI GCATC 1 cut(s) 205
Bpu10I CCTNAGC 2 cut(s) 75, 153
Bpu1102I GCTNAGC 2 cut(s) 594, 652
BpuEI CTTGAG 1 cut(s) 818
BsaAI YACGTR 2 cut(s) 458, 689
BsaI GGTCTC 1 cut(s) 597
BsaJI CCNNGG 4 cut(s) 69, 132, 324, 612
BsaWI WCCGGW 2 cut(s) 431, 903
BsaXI ACNNNNNCTCC 2 cut(s) 804, 834
Bsc4I CCNNNNNNNGG 2 cut(s) 613, 809
Bse118I RCCGGY 2 cut(s) 404, 431
Bse3DI GCAATG 1 cut(s) 665
BseBI CCWGG 2 cut(s) 326, 614
BseDI CCNNGG 4 cut(s) 69, 132, 324, 612
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 613, 809
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 3 cut(s) 144, 608, 666
BseSI GKGCMC 1 cut(s) 344
BseXI GCAGC 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 236
Bsh1285I CGRYCG 1 cut(s) 436
BshFI GGCC 3 cut(s) 323, 408, 839
BshTI ACCGGT 1 cut(s) 431
BsiEI CGRYCG 1 cut(s) 436
BsiHKAI GWGCWC 1 cut(s) 653
BsiHKCI CYCGRG 2 cut(s) 384, 600
BsiSI CCGG 3 cut(s) 405, 432, 904
BslFI GGGAC 2 cut(s) 410, 467
BslI CCNNNNNNNGG 2 cut(s) 613, 809
BsmAI GTCTC 2 cut(s) 565, 597
BsmFI GGGAC 2 cut(s) 410, 467
BsnI GGCC 3 cut(s) 323, 408, 839
Bso31I GGTCTC 1 cut(s) 597
BsoBI CYCGRG 2 cut(s) 384, 600
Bsp1286I GDGCHC 2 cut(s) 344, 653
Bsp143I GATC 7 cut(s) 222, 250, 315, 706, 781, 799, 843
Bsp1720I GCTNAGC 2 cut(s) 594, 652
BspACI CCGC 1 cut(s) 21
BspANI GGCC 3 cut(s) 323, 408, 839
BspCNI CTCAG 3 cut(s) 145, 607, 665
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 618
BspMAI CTGCAG 1 cut(s) 676
BspPI GGATC 5 cut(s) 217, 245, 701, 789, 794
BspTNI GGTCTC 1 cut(s) 597
BsrDI GCAATG 1 cut(s) 665
BsrFI RCCGGY 2 cut(s) 404, 431
BssAI RCCGGY 2 cut(s) 404, 431
BssECI CCNNGG 4 cut(s) 69, 132, 324, 612
BssMI GATC 7 cut(s) 222, 250, 315, 706, 781, 799, 843
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 326, 614
Bst4CI ACNGT 3 cut(s) 197, 352, 446
BstAPI GCANNNNNTGC 2 cut(s) 380, 648
BstBAI YACGTR 2 cut(s) 458, 689
BstC8I GCNNGC 4 cut(s) 406, 672, 681, 770
BstDEI CTNAG 4 cut(s) 75, 153, 594, 652
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 7 cut(s) 225, 253, 318, 709, 784, 802, 846
BstMAI GTCTC 2 cut(s) 565, 597
BstMBI GATC 7 cut(s) 222, 250, 315, 706, 781, 799, 843
BstMCI CGRYCG 1 cut(s) 436
BstMWI GCNNNNNNNGC 5 cut(s) 380, 389, 648, 676, 680
BstNI CCWGG 2 cut(s) 326, 614
BstNSI RCATGY 2 cut(s) 107, 523
BstSCI CCNGG 2 cut(s) 324, 612
BstSFI CTRYAG 2 cut(s) 255, 672
BstSLI GKGCMC 1 cut(s) 344
BstSNI TACGTA 1 cut(s) 689
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 367
BsuRI GGCC 3 cut(s) 323, 408, 839
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 4 cut(s) 406, 672, 681, 770
CfoI GCGC 1 cut(s) 362
Cfr10I RCCGGY 2 cut(s) 404, 431
Cfr13I GGNCC 2 cut(s) 322, 616
CseI GACGC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 739, 788
CspAI ACCGGT 1 cut(s) 431
CviAII CATG 4 cut(s) 104, 191, 520, 841
CviQI GTAC 2 cut(s) 739, 788
DdeI CTNAG 4 cut(s) 75, 153, 594, 652
DpnI GATC 7 cut(s) 224, 252, 317, 708, 783, 801, 845
DpnII GATC 7 cut(s) 222, 250, 315, 706, 781, 799, 843
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
Eco105I TACGTA 1 cut(s) 689
Eco130I CCWWGG 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 597
Eco47I GGWCC 1 cut(s) 616
Eco72I CACGTG 1 cut(s) 458
Eco88I CYCGRG 2 cut(s) 384, 600
EcoRII CCWGG 2 cut(s) 324, 612
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 4 cut(s) 107, 194, 523, 844
FaqI GGGAC 2 cut(s) 410, 467
FatI CATG 4 cut(s) 103, 190, 519, 840
FbaI TGATCA 1 cut(s) 843
Fnu4HI GCNGC 2 cut(s) 21, 381
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 21, 381
FspBI CTAG 4 cut(s) 401, 545, 638, 659
GlaI GCGC 1 cut(s) 361
GluI GCNGC 2 cut(s) 21, 381
HaeIII GGCC 3 cut(s) 323, 408, 839
HapII CCGG 3 cut(s) 405, 432, 904
HgaI GACGC 1 cut(s) 242
HhaI GCGC 1 cut(s) 362
Hin1II CATG 4 cut(s) 107, 194, 523, 844
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HpaII CCGG 3 cut(s) 405, 432, 904
HphI GGTGA 6 cut(s) 25, 31, 40, 260, 261, 862
Hpy166II GTNNAC 4 cut(s) 48, 397, 700, 748
Hpy188I TCNGA 5 cut(s) 70, 466, 504, 568, 781
Hpy188III TCNNGA 3 cut(s) 299, 386, 847
Hpy8I GTNNAC 4 cut(s) 48, 397, 700, 748
HpyAV CCTTC 5 cut(s) 46, 71, 77, 618, 875
HpyCH4III ACNGT 3 cut(s) 197, 352, 446
HpyCH4IV ACGT 3 cut(s) 457, 480, 688
HpyCH4V TGCA 1 cut(s) 674
HpyF10VI GCNNNNNNNGC 5 cut(s) 380, 389, 648, 676, 680
HpyF3I CTNAG 4 cut(s) 75, 153, 594, 652
HpySE526I ACGT 3 cut(s) 457, 480, 688
Hsp92II CATG 4 cut(s) 107, 194, 523, 844
HspAI GCGC 1 cut(s) 360
KroI GCCGGC 1 cut(s) 404
KroNI GCCGGC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 843
Kzo9I GATC 7 cut(s) 222, 250, 315, 706, 781, 799, 843
LmnI GCTCC 1 cut(s) 812
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 1 cut(s) 205
MaeI CTAG 4 cut(s) 401, 545, 638, 659
MaeII ACGT 3 cut(s) 457, 480, 688
MaeIII GTNAC 4 cut(s) 125, 416, 440, 493
MalI GATC 7 cut(s) 224, 252, 317, 708, 783, 801, 845
MboI GATC 7 cut(s) 222, 250, 315, 706, 781, 799, 843
MboII GAAGA 2 cut(s) 560, 867
MfeI CAATTG 1 cut(s) 816
MhlI GDGCHC 2 cut(s) 344, 653
MluCI AATT 5 cut(s) 15, 368, 472, 816, 827
MmeI TCCRAC 3 cut(s) 210, 591, 734
MroNI GCCGGC 1 cut(s) 404
MseI TTAA 1 cut(s) 822
MspI CCGG 3 cut(s) 405, 432, 904
MspR9I CCNGG 2 cut(s) 326, 614
MunI CAATTG 1 cut(s) 816
MvaI CCWGG 2 cut(s) 326, 614
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 5 cut(s) 380, 389, 648, 676, 680
NaeI GCCGGC 1 cut(s) 406
NdeII GATC 7 cut(s) 222, 250, 315, 706, 781, 799, 843
NgoMIV GCCGGC 1 cut(s) 404
NlaIII CATG 4 cut(s) 107, 194, 523, 844
NlaIV GGNNCC 1 cut(s) 618
NmuCI GTSAC 2 cut(s) 416, 440
NspI RCATGY 2 cut(s) 107, 523
PaeR7I CTCGAG 1 cut(s) 384
PciI ACATGT 2 cut(s) 103, 519
PdiI GCCGGC 1 cut(s) 406
PinAI ACCGGT 1 cut(s) 431
PkrI GCNGC 2 cut(s) 22, 382
PmaCI CACGTG 1 cut(s) 458
PmlI CACGTG 1 cut(s) 458
Ppu21I YACGTR 2 cut(s) 458, 689
PscI ACATGT 2 cut(s) 103, 519
Psp6I CCWGG 2 cut(s) 324, 612
PspCI CACGTG 1 cut(s) 458
PspGI CCWGG 2 cut(s) 324, 612
PspN4I GGNNCC 1 cut(s) 618
PspPI GGNCC 2 cut(s) 322, 616
PstI CTGCAG 1 cut(s) 676
RsaI GTAC 2 cut(s) 740, 789
RsaNI GTAC 2 cut(s) 739, 788
SaqAI TTAA 1 cut(s) 822
SatI GCNGC 2 cut(s) 21, 381
Sau3AI GATC 7 cut(s) 222, 250, 315, 706, 781, 799, 843
Sau96I GGNCC 2 cut(s) 322, 616
ScaI AGTACT 2 cut(s) 740, 789
ScrFI CCNGG 2 cut(s) 326, 614
SduI GDGCHC 2 cut(s) 344, 653
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 2 cut(s) 255, 672
Sfr274I CTCGAG 1 cut(s) 384
SinI GGWCC 1 cut(s) 616
SlaI CTCGAG 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 384, 833
SmoI CTYRAG 2 cut(s) 384, 833
SnaBI TACGTA 1 cut(s) 689
Sse9I AATT 5 cut(s) 15, 368, 472, 816, 827
SsiI CCGC 1 cut(s) 21
SspMI CTAG 4 cut(s) 401, 545, 638, 659
StyD4I CCNGG 2 cut(s) 324, 612
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 3 cut(s) 197, 352, 446
TaiI ACGT 3 cut(s) 460, 483, 691
TaqI TCGA 3 cut(s) 122, 221, 385
TasI AATT 5 cut(s) 15, 368, 472, 816, 827
TatI WGTACW 2 cut(s) 738, 787
TauI GCSGC 1 cut(s) 23
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TseFI GTSAC 2 cut(s) 416, 440
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 2 cut(s) 416, 440
TspDTI ATGAA 1 cut(s) 894
VpaK11BI GGWCC 1 cut(s) 616
XapI RAATTY 1 cut(s) 827
XceI RCATGY 2 cut(s) 107, 523
XcmI CCANNNNNNNNNTGG 1 cut(s) 847
XhoI CTCGAG 1 cut(s) 384
XspI CTAG 4 cut(s) 401, 545, 638, 659
ZrmI AGTACT 2 cut(s) 740, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.